Clone Name | rbah61f11 |
---|---|
Clone Library Name | barley_pub |
>emb|X63052.1|HVCP29 Hordeum vulgare gene for CP29 precursor for core chlorophyll a/b binding (CAB) protein of photosystem II (PSII) Length = 2689 Score = 521 bits (263), Expect = e-145 Identities = 263/263 (100%) Strand = Plus / Minus Query: 1 atgtttcttctgcccttgataatttacacgtacggcacattcgtactctcatacttttcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2403 atgtttcttctgcccttgataatttacacgtacggcacattcgtactctcatacttttcc 2344 Query: 61 ccggtaaaattcacacagcacatcatgctgcatcgcacgcacgcatgcagctgagcatca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2343 ccggtaaaattcacacagcacatcatgctgcatcgcacgcacgcatgcagctgagcatca 2284 Query: 121 acagccgacggcggcggacgggcaatcaacggccagctcacaggctgggcaccctctcgg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2283 acagccgacggcggcggacgggcaatcaacggccagctcacaggctgggcaccctctcgg 2224 Query: 181 cggcgccggagatgacggtgagcaggttgttgccgaaggggtcgctgaggtgggcgcaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2223 cggcgccggagatgacggtgagcaggttgttgccgaaggggtcgctgaggtgggcgcaca 2164 Query: 241 ggttctcgaagggcccctcgccg 263 ||||||||||||||||||||||| Sbjct: 2163 ggttctcgaagggcccctcgccg 2141
>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091I11, complete sequence Length = 135993 Score = 135 bits (68), Expect = 8e-29 Identities = 95/104 (91%) Strand = Plus / Minus Query: 160 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 40261 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 40202 Query: 220 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccg 263 ||||||||||||| | | |||||||||| ||| ||||||||| Sbjct: 40201 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccg 40158
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 135 bits (68), Expect = 8e-29 Identities = 95/104 (91%) Strand = Plus / Minus Query: 160 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7581175 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 7581116 Query: 220 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccg 263 ||||||||||||| | | |||||||||| ||| ||||||||| Sbjct: 7581115 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccg 7581072
>dbj|AK104824.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F05, full insert sequence Length = 1157 Score = 135 bits (68), Expect = 8e-29 Identities = 95/104 (91%) Strand = Plus / Minus Query: 160 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 940 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 881 Query: 220 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccg 263 ||||||||||||| | | |||||||||| ||| ||||||||| Sbjct: 880 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccg 837
>dbj|AK098872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B10, full insert sequence Length = 1101 Score = 135 bits (68), Expect = 8e-29 Identities = 95/104 (91%) Strand = Plus / Minus Query: 160 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 930 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 871 Query: 220 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccg 263 ||||||||||||| | | |||||||||| ||| ||||||||| Sbjct: 870 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccg 827
>dbj|AK061295.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D05, full insert sequence Length = 1186 Score = 135 bits (68), Expect = 8e-29 Identities = 95/104 (91%) Strand = Plus / Minus Query: 160 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 941 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 882 Query: 220 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccg 263 ||||||||||||| | | |||||||||| ||| ||||||||| Sbjct: 881 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccg 838
>gb|AY105650.1| Zea mays PCO135935 mRNA sequence Length = 1366 Score = 135 bits (68), Expect = 8e-29 Identities = 74/76 (97%) Strand = Plus / Minus Query: 157 ctcacaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccga 216 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1028 ctcacaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccga 969 Query: 217 aggggtcgctgaggtg 232 |||||||||||||||| Sbjct: 968 aggggtcgctgaggtg 953
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 135 bits (68), Expect = 8e-29 Identities = 95/104 (91%) Strand = Plus / Minus Query: 160 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7651262 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 7651203 Query: 220 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccg 263 ||||||||||||| | | |||||||||| ||| ||||||||| Sbjct: 7651202 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccg 7651159
>gb|U23188.1|ZMU23188 Zea mays chlorophyll a/b-binding apoprotein CP26 (Lhcb5-1) mRNA, complete cds Length = 957 Score = 135 bits (68), Expect = 8e-29 Identities = 74/76 (97%) Strand = Plus / Minus Query: 157 ctcacaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccga 216 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 886 ctcacaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccga 827 Query: 217 aggggtcgctgaggtg 232 |||||||||||||||| Sbjct: 826 aggggtcgctgaggtg 811
>dbj|D85512.1| Oryza sativa (japonica cultivar-group) CP26 mRNA, partial sequence Length = 556 Score = 135 bits (68), Expect = 8e-29 Identities = 95/104 (91%) Strand = Plus / Minus Query: 160 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 395 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 336 Query: 220 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccg 263 ||||||||||||| | | |||||||||| ||| ||||||||| Sbjct: 335 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccg 292
>gb|U23189.1|ZMU23189 Zea mays chlorophyll a/b-binding apoprotein CP26 (Lhcb5-2) mRNA, complete cds Length = 1073 Score = 121 bits (61), Expect = 1e-24 Identities = 70/73 (95%) Strand = Plus / Minus Query: 160 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219 ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 881 acaggctaggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 822 Query: 220 ggtcgctgaggtg 232 ||||||||||||| Sbjct: 821 ggtcgctgaggtg 809
>gb|AY855171.1| Eleusine coracana subsp. coracana clone 1 light harvesting protein mRNA, partial cds Length = 364 Score = 113 bits (57), Expect = 3e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 160 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219 |||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 193 acaggctgggtgccctctcggcggcaccagagatgacggtgagcaggttgttgccgaagg 134 Query: 220 ggtcgctgaggtg 232 ||||||||||||| Sbjct: 133 ggtcgctgaggtg 121 Score = 44.1 bits (22), Expect = 0.22 Identities = 34/38 (89%) Strand = Plus / Minus Query: 15 cttgataatttacacgtacggcacattcgtactctcat 52 |||||||||||||||| |||| |||||| |||||||| Sbjct: 319 cttgataatttacacgcacggtacattcagactctcat 282
>gb|BT014450.1| Lycopersicon esculentum clone 133776F, mRNA sequence Length = 1196 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 191 gatgacggtgagcaggttgttgccgaaggggtc 223 |||||||||||||| ||||||||| |||||||| Sbjct: 907 gatgacggtgagcaagttgttgccaaaggggtc 875
>emb|X61287.1|LECAB9 L.esculentum Cab9 gene for type I (26 kD) CP29 polypeptide Length = 2327 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Minus Query: 191 gatgacggtgagcaggttgttgccgaaggggtc 223 |||||||||||||| ||||||||| |||||||| Sbjct: 1939 gatgacggtgagcaagttgttgccaaaggggtc 1907
>dbj|AB050007.2| Chlamydomonas reinhardtii lhcb5 mRNA for CP26, complete cds Length = 952 Score = 46.1 bits (23), Expect = 0.055 Identities = 29/31 (93%) Strand = Plus / Minus Query: 194 gacggtgagcaggttgttgccgaaggggtcg 224 |||||| |||||||||| ||||||||||||| Sbjct: 883 gacggtcagcaggttgtagccgaaggggtcg 853
>gb|AC145591.5| Mus musculus BAC clone RP24-176N2 from chromosome 18, complete sequence Length = 167532 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 aaattcacacagcacatcatg 87 ||||||||||||||||||||| Sbjct: 74556 aaattcacacagcacatcatg 74536
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 cggcggcgccggagatgacgg 198 ||||||||||||||||||||| Sbjct: 23574580 cggcggcgccggagatgacgg 23574600
>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0481H08 Length = 146841 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 cggcggcgccggagatgacgg 198 ||||||||||||||||||||| Sbjct: 55544 cggcggcgccggagatgacgg 55564
>gb|U25812.1|PSU25812 Pseudomonas syringae pv. syringae hrp gene cluster, hrpU, hrpW, hrpO, hrpX, and hrpY genes, complete cds, and hrpU2, partial cds Length = 3672 Score = 42.1 bits (21), Expect = 0.86 Identities = 24/25 (96%) Strand = Plus / Plus Query: 195 acggtgagcaggttgttgccgaagg 219 ||||||||||||| ||||||||||| Sbjct: 488 acggtgagcaggtggttgccgaagg 512
>gb|AC139637.17| Mus musculus chromosome 15, clone RP24-253M12, complete sequence Length = 136076 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 caggctgggcaccctctcgg 180 |||||||||||||||||||| Sbjct: 97871 caggctgggcaccctctcgg 97852
>ref|NM_001039970.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) (PTPN5), transcript variant 3, mRNA Length = 3105 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctcacaggctgggcaccctc 176 |||||||||||||||||||| Sbjct: 2657 ctcacaggctgggcaccctc 2638
>ref|NM_032781.3| Homo sapiens protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) (PTPN5), transcript variant 2, mRNA Length = 3156 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctcacaggctgggcaccctc 176 |||||||||||||||||||| Sbjct: 2708 ctcacaggctgggcaccctc 2689
>ref|NM_006906.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) (PTPN5), transcript variant 1, mRNA Length = 3201 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctcacaggctgggcaccctc 176 |||||||||||||||||||| Sbjct: 2753 ctcacaggctgggcaccctc 2734
>gb|AC142474.4| Mus musculus BAC clone RP24-362N7 from chromosome 15, complete sequence Length = 172879 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caggctgggcaccctctcgg 180 |||||||||||||||||||| Sbjct: 152256 caggctgggcaccctctcgg 152275
>ref|XM_883654.1| Candida albicans SC5314 hypothetical protein (CaJ7.0138) partial mRNA Length = 936 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 ggttgttgccgaaggggtcgctga 228 ||||| |||||||||||||||||| Sbjct: 588 ggttggtgccgaaggggtcgctga 611
>ref|XM_707383.1| Candida albicans SC5314 potential guanine nucleotide exchange factor eIF-2B alpha subunit (GCN3) partial mRNA Length = 936 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 ggttgttgccgaaggggtcgctga 228 ||||| |||||||||||||||||| Sbjct: 588 ggttggtgccgaaggggtcgctga 611
>gb|BC046435.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched), mRNA (cDNA clone IMAGE:5198635), partial cds Length = 1680 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctcacaggctgggcaccctc 176 |||||||||||||||||||| Sbjct: 1232 ctcacaggctgggcaccctc 1213
>gb|BC064807.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched), transcript variant 1, mRNA (cDNA clone MGC:65158 IMAGE:5726473), complete cds Length = 2947 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctcacaggctgggcaccctc 176 |||||||||||||||||||| Sbjct: 2517 ctcacaggctgggcaccctc 2498
>gb|BC039897.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched), mRNA (cDNA clone IMAGE:5196107), partial cds Length = 2860 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctcacaggctgggcaccctc 176 |||||||||||||||||||| Sbjct: 2416 ctcacaggctgggcaccctc 2397
>emb|AL832541.1|HSM803850 Homo sapiens mRNA; cDNA DKFZp547A0817 (from clone DKFZp547A0817) Length = 3149 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctcacaggctgggcaccctc 176 |||||||||||||||||||| Sbjct: 2751 ctcacaggctgggcaccctc 2732
>emb|AL806524.10| Mouse DNA sequence from clone RP23-158E10 on chromosome 4, complete sequence Length = 211513 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 tcacacagcacatcatgctg 90 |||||||||||||||||||| Sbjct: 62126 tcacacagcacatcatgctg 62107
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 185 gccggagatgacggtgagcaggttgttg 212 |||||||||||||||||| | ||||||| Sbjct: 391992 gccggagatgacggtgaggatgttgttg 391965
>dbj|AK127312.1| Homo sapiens cDNA FLJ45381 fis, clone BRHIP3021019, highly similar to Protein-tyrosine phosphatase, non-receptor type 5 (EC 3.1.3.48) Length = 3871 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctcacaggctgggcaccctc 176 |||||||||||||||||||| Sbjct: 3491 ctcacaggctgggcaccctc 3472
>dbj|AK090923.1| Homo sapiens cDNA FLJ33604 fis, clone BRAMY2015251, highly similar to PROTEIN-TYROSINE PHOSPHATASE STRIATUM-ENRICHED (EC 3.1.3.48) Length = 2965 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctcacaggctgggcaccctc 176 |||||||||||||||||||| Sbjct: 2617 ctcacaggctgggcaccctc 2598
>dbj|AK027333.1| Homo sapiens cDNA FLJ14427 fis, clone HEMBA1006173 Length = 1074 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctcacaggctgggcaccctc 176 |||||||||||||||||||| Sbjct: 694 ctcacaggctgggcaccctc 675
>dbj|AK055450.1| Homo sapiens cDNA FLJ30888 fis, clone FEBRA2005079, highly similar to PROTEIN-TYROSINE PHOSPHATASE STRIATUM-ENRICHED (EC 3.1.3.48) Length = 2299 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctcacaggctgggcaccctc 176 |||||||||||||||||||| Sbjct: 1919 ctcacaggctgggcaccctc 1900
>gb|AC103974.6| Homo sapiens chromosome 11, clone RP11-1081L13, complete sequence Length = 189230 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctcacaggctgggcaccctc 176 |||||||||||||||||||| Sbjct: 153760 ctcacaggctgggcaccctc 153741
>emb|BX530075.7| Zebrafish DNA sequence from clone CH211-1O14 in linkage group 5, complete sequence Length = 176078 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cgcacgcacgcatgcagctg 113 |||||||||||||||||||| Sbjct: 134568 cgcacgcacgcatgcagctg 134587
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 ctctcggcggcgccggagatgacg 197 |||||| ||||||||||||||||| Sbjct: 10937451 ctctcgccggcgccggagatgacg 10937428
>emb|AL731618.3|OSJN00269 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012A12, complete sequence Length = 122766 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 ctctcggcggcgccggagatgacg 197 |||||| ||||||||||||||||| Sbjct: 40516 ctctcgccggcgccggagatgacg 40493
>gb|BC047349.1| Mus musculus, clone IMAGE:3595895, mRNA Length = 1680 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctcacaggctgggcaccctc 176 |||||||||||||||||||| Sbjct: 1232 ctcacaggctgggcaccctc 1213
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 185 gccggagatgacggtgagcaggttgttg 212 ||||| |||||||||||||| ||||||| Sbjct: 6048197 gccggtgatgacggtgagcacgttgttg 6048224
>dbj|AB060245.1| Macaca fascicularis brain cDNA clone:QflA-15249, full insert sequence Length = 2837 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 ctcacaggctgggcaccctc 176 |||||||||||||||||||| Sbjct: 2441 ctcacaggctgggcaccctc 2422
>gb|U68715.1|BFU68715 Botryotinia fuckeliana endopolygalacturonase 1 (BcPGA1) gene, complete cds Length = 2291 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 gcatcaacagccgacggcgg 134 |||||||||||||||||||| Sbjct: 669 gcatcaacagccgacggcgg 688
>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence Length = 949626 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 205 ggttgttgccgaaggggtcgctga 228 ||||| |||||||||||||||||| Sbjct: 254994 ggttggtgccgaaggggtcgctga 255017
>emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-991C1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 177792 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gcacgcatgcagctgagcat 118 |||||||||||||||||||| Sbjct: 109052 gcacgcatgcagctgagcat 109033 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,156,549 Number of Sequences: 3902068 Number of extensions: 2156549 Number of successful extensions: 38353 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38083 Number of HSP's gapped (non-prelim): 270 length of query: 263 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 241 effective length of database: 17,147,199,772 effective search space: 4132475145052 effective search space used: 4132475145052 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)