ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X63052.1|HVCP29 Hordeum vulgare gene for CP29 precursor for ... 521 e-145
2gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome... 135 8e-29
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 135 8e-29
4dbj|AK104824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 8e-29
5dbj|AK098872.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 8e-29
6dbj|AK061295.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 8e-29
7gb|AY105650.1| Zea mays PCO135935 mRNA sequence 135 8e-29
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 135 8e-29
9gb|U23188.1|ZMU23188 Zea mays chlorophyll a/b-binding apoprotein... 135 8e-29
10dbj|D85512.1| Oryza sativa (japonica cultivar-group) CP26 mRNA, ... 135 8e-29
11gb|U23189.1|ZMU23189 Zea mays chlorophyll a/b-binding apoprotein... 121 1e-24
12gb|AY855171.1| Eleusine coracana subsp. coracana clone 1 light h... 113 3e-22
13gb|BT014450.1| Lycopersicon esculentum clone 133776F, mRNA sequence 50 0.004
14emb|X61287.1|LECAB9 L.esculentum Cab9 gene for type I (26 kD) CP... 50 0.004
15dbj|AB050007.2| Chlamydomonas reinhardtii lhcb5 mRNA for CP26, c... 46 0.055
16gb|AC145591.5| Mus musculus BAC clone RP24-176N2 from chromosome... 42 0.86
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.86
18dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.86
19gb|U25812.1|PSU25812 Pseudomonas syringae pv. syringae hrp gene ... 42 0.86
20gb|AC139637.17| Mus musculus chromosome 15, clone RP24-253M12, c... 40 3.4
21ref|NM_001039970.1| Homo sapiens protein tyrosine phosphatase, n... 40 3.4
22ref|NM_032781.3| Homo sapiens protein tyrosine phosphatase, non-... 40 3.4
23ref|NM_006906.1| Homo sapiens protein tyrosine phosphatase, non-... 40 3.4
24gb|AC142474.4| Mus musculus BAC clone RP24-362N7 from chromosome... 40 3.4
25ref|XM_883654.1| Candida albicans SC5314 hypothetical protein (C... 40 3.4
26ref|XM_707383.1| Candida albicans SC5314 potential guanine nucle... 40 3.4
27gb|BC046435.1| Homo sapiens protein tyrosine phosphatase, non-re... 40 3.4
28gb|BC064807.1| Homo sapiens protein tyrosine phosphatase, non-re... 40 3.4
29gb|BC039897.1| Homo sapiens protein tyrosine phosphatase, non-re... 40 3.4
30emb|AL832541.1|HSM803850 Homo sapiens mRNA; cDNA DKFZp547A0817 (... 40 3.4
31emb|AL806524.10| Mouse DNA sequence from clone RP23-158E10 on ch... 40 3.4
32gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 3.4
33dbj|AK127312.1| Homo sapiens cDNA FLJ45381 fis, clone BRHIP30210... 40 3.4
34dbj|AK090923.1| Homo sapiens cDNA FLJ33604 fis, clone BRAMY20152... 40 3.4
35dbj|AK027333.1| Homo sapiens cDNA FLJ14427 fis, clone HEMBA1006173 40 3.4
36dbj|AK055450.1| Homo sapiens cDNA FLJ30888 fis, clone FEBRA20050... 40 3.4
37gb|AC103974.6| Homo sapiens chromosome 11, clone RP11-1081L13, c... 40 3.4
38emb|BX530075.7| Zebrafish DNA sequence from clone CH211-1O14 in ... 40 3.4
39dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
40emb|AL731618.3|OSJN00269 Oryza sativa genomic DNA, chromosome 4,... 40 3.4
41gb|BC047349.1| Mus musculus, clone IMAGE:3595895, mRNA 40 3.4
42dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 3.4
43dbj|AB060245.1| Macaca fascicularis brain cDNA clone:QflA-15249,... 40 3.4
44gb|U68715.1|BFU68715 Botryotinia fuckeliana endopolygalacturonas... 40 3.4
45dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, comp... 40 3.4
46emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-9... 40 3.4 
>emb|X63052.1|HVCP29 Hordeum vulgare gene for CP29 precursor for core chlorophyll a/b
            binding (CAB) protein of photosystem II (PSII)
          Length = 2689

 Score =  521 bits (263), Expect = e-145
 Identities = 263/263 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    atgtttcttctgcccttgataatttacacgtacggcacattcgtactctcatacttttcc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2403 atgtttcttctgcccttgataatttacacgtacggcacattcgtactctcatacttttcc 2344

                                                                        
Query: 61   ccggtaaaattcacacagcacatcatgctgcatcgcacgcacgcatgcagctgagcatca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2343 ccggtaaaattcacacagcacatcatgctgcatcgcacgcacgcatgcagctgagcatca 2284

                                                                        
Query: 121  acagccgacggcggcggacgggcaatcaacggccagctcacaggctgggcaccctctcgg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2283 acagccgacggcggcggacgggcaatcaacggccagctcacaggctgggcaccctctcgg 2224

                                                                        
Query: 181  cggcgccggagatgacggtgagcaggttgttgccgaaggggtcgctgaggtgggcgcaca 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2223 cggcgccggagatgacggtgagcaggttgttgccgaaggggtcgctgaggtgggcgcaca 2164

                                   
Query: 241  ggttctcgaagggcccctcgccg 263
            |||||||||||||||||||||||
Sbjct: 2163 ggttctcgaagggcccctcgccg 2141
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>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0091I11, complete sequence
          Length = 135993

 Score =  135 bits (68), Expect = 8e-29
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                         
Query: 160   acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219
             |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40261 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 40202

                                                         
Query: 220   ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccg 263
             |||||||||||||   | | |||||||||| ||| |||||||||
Sbjct: 40201 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccg 40158
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  135 bits (68), Expect = 8e-29
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                           
Query: 160     acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219
               |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7581175 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 7581116

                                                           
Query: 220     ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccg 263
               |||||||||||||   | | |||||||||| ||| |||||||||
Sbjct: 7581115 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccg 7581072
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>dbj|AK104824.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F05, full
           insert sequence
          Length = 1157

 Score =  135 bits (68), Expect = 8e-29
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                       
Query: 160 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 881

                                                       
Query: 220 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccg 263
           |||||||||||||   | | |||||||||| ||| |||||||||
Sbjct: 880 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccg 837
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>dbj|AK098872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B10, full
           insert sequence
          Length = 1101

 Score =  135 bits (68), Expect = 8e-29
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                       
Query: 160 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 871

                                                       
Query: 220 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccg 263
           |||||||||||||   | | |||||||||| ||| |||||||||
Sbjct: 870 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccg 827
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>dbj|AK061295.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D05, full
           insert sequence
          Length = 1186

 Score =  135 bits (68), Expect = 8e-29
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                       
Query: 160 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 882

                                                       
Query: 220 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccg 263
           |||||||||||||   | | |||||||||| ||| |||||||||
Sbjct: 881 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccg 838
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>gb|AY105650.1| Zea mays PCO135935 mRNA sequence
          Length = 1366

 Score =  135 bits (68), Expect = 8e-29
 Identities = 74/76 (97%)
 Strand = Plus / Minus

                                                                        
Query: 157  ctcacaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccga 216
            ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 ctcacaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccga 969

                            
Query: 217  aggggtcgctgaggtg 232
            ||||||||||||||||
Sbjct: 968  aggggtcgctgaggtg 953
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  135 bits (68), Expect = 8e-29
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                           
Query: 160     acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219
               |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7651262 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 7651203

                                                           
Query: 220     ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccg 263
               |||||||||||||   | | |||||||||| ||| |||||||||
Sbjct: 7651202 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccg 7651159
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>gb|U23188.1|ZMU23188 Zea mays chlorophyll a/b-binding apoprotein CP26 (Lhcb5-1) mRNA,
           complete cds
          Length = 957

 Score =  135 bits (68), Expect = 8e-29
 Identities = 74/76 (97%)
 Strand = Plus / Minus

                                                                       
Query: 157 ctcacaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccga 216
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ctcacaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccga 827

                           
Query: 217 aggggtcgctgaggtg 232
           ||||||||||||||||
Sbjct: 826 aggggtcgctgaggtg 811
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>dbj|D85512.1| Oryza sativa (japonica cultivar-group) CP26 mRNA, partial sequence
          Length = 556

 Score =  135 bits (68), Expect = 8e-29
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                       
Query: 160 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 acaggctgggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 336

                                                       
Query: 220 ggtcgctgaggtgggcgcacaggttctcgaagggcccctcgccg 263
           |||||||||||||   | | |||||||||| ||| |||||||||
Sbjct: 335 ggtcgctgaggtgcttggagaggttctcgacggggccctcgccg 292
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>gb|U23189.1|ZMU23189 Zea mays chlorophyll a/b-binding apoprotein CP26 (Lhcb5-2) mRNA,
           complete cds
          Length = 1073

 Score =  121 bits (61), Expect = 1e-24
 Identities = 70/73 (95%)
 Strand = Plus / Minus

                                                                       
Query: 160 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219
           ||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 acaggctaggcgtcctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 822

                        
Query: 220 ggtcgctgaggtg 232
           |||||||||||||
Sbjct: 821 ggtcgctgaggtg 809
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>gb|AY855171.1| Eleusine coracana subsp. coracana clone 1 light harvesting protein
           mRNA, partial cds
          Length = 364

 Score =  113 bits (57), Expect = 3e-22
 Identities = 69/73 (94%)
 Strand = Plus / Minus

                                                                       
Query: 160 acaggctgggcaccctctcggcggcgccggagatgacggtgagcaggttgttgccgaagg 219
           ||||||||||  ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 193 acaggctgggtgccctctcggcggcaccagagatgacggtgagcaggttgttgccgaagg 134

                        
Query: 220 ggtcgctgaggtg 232
           |||||||||||||
Sbjct: 133 ggtcgctgaggtg 121



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 15  cttgataatttacacgtacggcacattcgtactctcat 52
           |||||||||||||||| |||| ||||||  ||||||||
Sbjct: 319 cttgataatttacacgcacggtacattcagactctcat 282
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>gb|BT014450.1| Lycopersicon esculentum clone 133776F, mRNA sequence
          Length = 1196

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 191 gatgacggtgagcaggttgttgccgaaggggtc 223
           |||||||||||||| ||||||||| ||||||||
Sbjct: 907 gatgacggtgagcaagttgttgccaaaggggtc 875
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>emb|X61287.1|LECAB9 L.esculentum Cab9 gene for type I (26 kD) CP29 polypeptide
          Length = 2327

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 191  gatgacggtgagcaggttgttgccgaaggggtc 223
            |||||||||||||| ||||||||| ||||||||
Sbjct: 1939 gatgacggtgagcaagttgttgccaaaggggtc 1907
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>dbj|AB050007.2| Chlamydomonas reinhardtii lhcb5 mRNA for CP26, complete cds
          Length = 952

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 194 gacggtgagcaggttgttgccgaaggggtcg 224
           |||||| |||||||||| |||||||||||||
Sbjct: 883 gacggtcagcaggttgtagccgaaggggtcg 853
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>gb|AC145591.5| Mus musculus BAC clone RP24-176N2 from chromosome 18, complete sequence
          Length = 167532

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 67    aaattcacacagcacatcatg 87
             |||||||||||||||||||||
Sbjct: 74556 aaattcacacagcacatcatg 74536
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 178      cggcggcgccggagatgacgg 198
                |||||||||||||||||||||
Sbjct: 23574580 cggcggcgccggagatgacgg 23574600
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>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0481H08
          Length = 146841

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 178   cggcggcgccggagatgacgg 198
             |||||||||||||||||||||
Sbjct: 55544 cggcggcgccggagatgacgg 55564
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>gb|U25812.1|PSU25812 Pseudomonas syringae pv. syringae hrp gene cluster, hrpU, hrpW,
           hrpO, hrpX, and hrpY genes, complete cds, and hrpU2,
           partial cds
          Length = 3672

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 195 acggtgagcaggttgttgccgaagg 219
           ||||||||||||| |||||||||||
Sbjct: 488 acggtgagcaggtggttgccgaagg 512
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>gb|AC139637.17| Mus musculus chromosome 15, clone RP24-253M12, complete sequence
          Length = 136076

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   caggctgggcaccctctcgg 180
             ||||||||||||||||||||
Sbjct: 97871 caggctgggcaccctctcgg 97852
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>ref|NM_001039970.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched) (PTPN5), transcript variant 3, mRNA
          Length = 3105

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  ctcacaggctgggcaccctc 176
            ||||||||||||||||||||
Sbjct: 2657 ctcacaggctgggcaccctc 2638
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>ref|NM_032781.3| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched) (PTPN5), transcript variant 2, mRNA
          Length = 3156

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  ctcacaggctgggcaccctc 176
            ||||||||||||||||||||
Sbjct: 2708 ctcacaggctgggcaccctc 2689
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>ref|NM_006906.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched) (PTPN5), transcript variant 1, mRNA
          Length = 3201

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  ctcacaggctgggcaccctc 176
            ||||||||||||||||||||
Sbjct: 2753 ctcacaggctgggcaccctc 2734
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>gb|AC142474.4| Mus musculus BAC clone RP24-362N7 from chromosome 15, complete sequence
          Length = 172879

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    caggctgggcaccctctcgg 180
              ||||||||||||||||||||
Sbjct: 152256 caggctgggcaccctctcgg 152275
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>ref|XM_883654.1| Candida albicans SC5314 hypothetical protein (CaJ7.0138) partial
           mRNA
          Length = 936

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 205 ggttgttgccgaaggggtcgctga 228
           ||||| ||||||||||||||||||
Sbjct: 588 ggttggtgccgaaggggtcgctga 611
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>ref|XM_707383.1| Candida albicans SC5314 potential guanine nucleotide exchange
           factor eIF-2B alpha subunit (GCN3) partial mRNA
          Length = 936

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 205 ggttgttgccgaaggggtcgctga 228
           ||||| ||||||||||||||||||
Sbjct: 588 ggttggtgccgaaggggtcgctga 611
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>gb|BC046435.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched), mRNA (cDNA clone IMAGE:5198635),
            partial cds
          Length = 1680

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  ctcacaggctgggcaccctc 176
            ||||||||||||||||||||
Sbjct: 1232 ctcacaggctgggcaccctc 1213
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>gb|BC064807.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched), transcript variant 1, mRNA (cDNA
            clone MGC:65158 IMAGE:5726473), complete cds
          Length = 2947

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  ctcacaggctgggcaccctc 176
            ||||||||||||||||||||
Sbjct: 2517 ctcacaggctgggcaccctc 2498
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>gb|BC039897.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 5
            (striatum-enriched), mRNA (cDNA clone IMAGE:5196107),
            partial cds
          Length = 2860

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  ctcacaggctgggcaccctc 176
            ||||||||||||||||||||
Sbjct: 2416 ctcacaggctgggcaccctc 2397
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>emb|AL832541.1|HSM803850 Homo sapiens mRNA; cDNA DKFZp547A0817 (from clone DKFZp547A0817)
          Length = 3149

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  ctcacaggctgggcaccctc 176
            ||||||||||||||||||||
Sbjct: 2751 ctcacaggctgggcaccctc 2732
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>emb|AL806524.10| Mouse DNA sequence from clone RP23-158E10 on chromosome 4, complete
             sequence
          Length = 211513

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    tcacacagcacatcatgctg 90
             ||||||||||||||||||||
Sbjct: 62126 tcacacagcacatcatgctg 62107
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 185    gccggagatgacggtgagcaggttgttg 212
              |||||||||||||||||| | |||||||
Sbjct: 391992 gccggagatgacggtgaggatgttgttg 391965
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>dbj|AK127312.1| Homo sapiens cDNA FLJ45381 fis, clone BRHIP3021019, highly  similar
            to Protein-tyrosine phosphatase, non-receptor type 5 (EC
            3.1.3.48)
          Length = 3871

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  ctcacaggctgggcaccctc 176
            ||||||||||||||||||||
Sbjct: 3491 ctcacaggctgggcaccctc 3472
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>dbj|AK090923.1| Homo sapiens cDNA FLJ33604 fis, clone BRAMY2015251, highly similar to
            PROTEIN-TYROSINE PHOSPHATASE STRIATUM-ENRICHED (EC
            3.1.3.48)
          Length = 2965

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  ctcacaggctgggcaccctc 176
            ||||||||||||||||||||
Sbjct: 2617 ctcacaggctgggcaccctc 2598
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>dbj|AK027333.1| Homo sapiens cDNA FLJ14427 fis, clone HEMBA1006173
          Length = 1074

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 157 ctcacaggctgggcaccctc 176
           ||||||||||||||||||||
Sbjct: 694 ctcacaggctgggcaccctc 675
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>dbj|AK055450.1| Homo sapiens cDNA FLJ30888 fis, clone FEBRA2005079, highly similar to
            PROTEIN-TYROSINE PHOSPHATASE STRIATUM-ENRICHED (EC
            3.1.3.48)
          Length = 2299

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  ctcacaggctgggcaccctc 176
            ||||||||||||||||||||
Sbjct: 1919 ctcacaggctgggcaccctc 1900
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>gb|AC103974.6| Homo sapiens chromosome 11, clone RP11-1081L13, complete sequence
          Length = 189230

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    ctcacaggctgggcaccctc 176
              ||||||||||||||||||||
Sbjct: 153760 ctcacaggctgggcaccctc 153741
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>emb|BX530075.7| Zebrafish DNA sequence from clone CH211-1O14 in linkage group 5, complete
              sequence
          Length = 176078

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     cgcacgcacgcatgcagctg 113
              ||||||||||||||||||||
Sbjct: 134568 cgcacgcacgcatgcagctg 134587
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 174      ctctcggcggcgccggagatgacg 197
                |||||| |||||||||||||||||
Sbjct: 10937451 ctctcgccggcgccggagatgacg 10937428
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>emb|AL731618.3|OSJN00269 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012A12,
             complete sequence
          Length = 122766

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 174   ctctcggcggcgccggagatgacg 197
             |||||| |||||||||||||||||
Sbjct: 40516 ctctcgccggcgccggagatgacg 40493
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>gb|BC047349.1| Mus musculus, clone IMAGE:3595895, mRNA
          Length = 1680

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  ctcacaggctgggcaccctc 176
            ||||||||||||||||||||
Sbjct: 1232 ctcacaggctgggcaccctc 1213
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 185     gccggagatgacggtgagcaggttgttg 212
               ||||| |||||||||||||| |||||||
Sbjct: 6048197 gccggtgatgacggtgagcacgttgttg 6048224
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>dbj|AB060245.1| Macaca fascicularis brain cDNA clone:QflA-15249, full insert sequence
          Length = 2837

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  ctcacaggctgggcaccctc 176
            ||||||||||||||||||||
Sbjct: 2441 ctcacaggctgggcaccctc 2422
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>gb|U68715.1|BFU68715 Botryotinia fuckeliana endopolygalacturonase 1 (BcPGA1) gene,
           complete cds
          Length = 2291

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 gcatcaacagccgacggcgg 134
           ||||||||||||||||||||
Sbjct: 669 gcatcaacagccgacggcgg 688
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>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence
          Length = 949626

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 205    ggttgttgccgaaggggtcgctga 228
              ||||| ||||||||||||||||||
Sbjct: 254994 ggttggtgccgaaggggtcgctga 255017
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>emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-991C1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 177792

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 99     gcacgcatgcagctgagcat 118
              ||||||||||||||||||||
Sbjct: 109052 gcacgcatgcagctgagcat 109033


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,156,549
Number of Sequences: 3902068
Number of extensions: 2156549
Number of successful extensions: 38353
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38083
Number of HSP's gapped (non-prelim): 270
length of query: 263
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 241
effective length of database: 17,147,199,772
effective search space: 4132475145052
effective search space used: 4132475145052
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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