No.
Definition
Score (bits)
E Value
1 dbj|AK104878.1| Oryza sativa (japonica cultivar-group) cDNA clon...
440
e-120
2 dbj|AK066022.1| Oryza sativa (japonica cultivar-group) cDNA clon...
440
e-120
3 ref|XM_464736.1| Oryza sativa (japonica cultivar-group), mRNA
212
1e-51
4 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
115
2e-22
5 dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic D...
115
2e-22
6 dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic D...
115
2e-22
7 gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome ...
107
4e-20
8 gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome...
107
4e-20
9 dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...
107
4e-20
10 gb|AY088311.1| Arabidopsis thaliana clone 5504 mRNA, complete se...
52
0.002
11 gb|AF002109.3| Arabidopsis thaliana chromosome 2 clone T28M21 ma...
48
0.034
12 ref|NM_187455.1| Oryza sativa (japonica cultivar-group), predic...
46
0.13
13 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
46
0.13
14 gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome...
46
0.13
15 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
46
0.13
16 dbj|AK101498.1| Oryza sativa (japonica cultivar-group) cDNA clon...
46
0.13
17 ref|NM_129555.2| Arabidopsis thaliana binding AT2G39970 mRNA, co...
44
0.53
18 gb|AY039858.1| Arabidopsis thaliana At2g39970/T28M21.13 mRNA, co...
44
0.53
19 emb|BX820432.1|CNS0A9K1 Arabidopsis thaliana Full-length cDNA Co...
44
0.53
20 emb|BX821427.1|CNS0A9AS Arabidopsis thaliana Full-length cDNA Co...
44
0.53
21 gb|BT003020.1| Arabidopsis thaliana At2g39970/T28M21.13 gene, co...
44
0.53
22 dbj|AB047148.1| Arabidopsis thaliana mRNA for 36kDa-peroxisomal ...
44
0.53
23 emb|CR352226.16| Zebrafish DNA sequence from clone CH211-209L18 ...
42
2.1
24 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
42
2.1
25 dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic D...
42
2.1
26 ref|NM_105681.1| Arabidopsis thaliana kinase AT1G70130 mRNA, com...
40
8.3
27 gb|AC111110.21| Mus musculus chromosome 1, clone RP23-201B13, co...
40
8.3
28 ref|XM_751431.1| Ustilago maydis 521 hypothetical protein (UM003...
40
8.3
29 gb|AC092032.5| Homo sapiens BAC clone RP11-730B22 from 7, comple...
40
8.3
30 emb|AL713914.10| Mouse DNA sequence from clone RP24-293E17 on ch...
40
8.3
31 emb|AL646095.27| Mouse DNA sequence from clone RP23-17P18 on chr...
40
8.3
32 gb|AC106865.4| Homo sapiens BAC clone RP11-153M7 from 4, complet...
40
8.3
33 gb|AC079349.6| Homo sapiens BAC clone RP11-436A7 from 4, complet...
40
8.3
34 gb|AC011337.5| Homo sapiens chromosome 5 clone CTC-251D13, compl...
40
8.3
35 dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co...
40
8.3
36 emb|BX088718.7| Zebrafish DNA sequence from clone DKEY-185E18, c...
40
8.3
37 dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic D...
40
8.3
38 dbj|AP005421.3| Oryza sativa (japonica cultivar-group) genomic D...
40
8.3
39 gb|AC002062.1|F20P5 Sequence of BAC F20P5 from Arabidopsis thali...
40
8.3
>dbj|AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 115 bits (58), Expect = 2e-22
Identities = 67/70 (95%)
Strand = Plus / Minus
Query: 515 accataattagtgtcggaataagtcctttccagaatccacttatgcctgattcacgatag 574
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 7021308 accataattagtgtcggaataagtcctttccagaatcctcttatgcctgattcacggtag 7021249
Query: 575 acttcccgga 584
|| |||||||
Sbjct: 7021248 acctcccgga 7021239
Score = 101 bits (51), Expect = 3e-18
Identities = 84/95 (88%)
Strand = Plus / Minus
Query: 170 accataaaaaggaccgaggcggcaaaaacactctgtacaatctttgtgcccattcctttg 229
||||||||||| || ||||||||||| || |||||||||||||| || ||||||||||||
Sbjct: 7023145 accataaaaagaactgaggcggcaaagacgctctgtacaatcttcgtacccattcctttg 7023086
Query: 230 taaaatccgtgcaatccctcgtagcgaatcatctt 264
||||| ||||||||||| || || || ||||||||
Sbjct: 7023085 taaaacccgtgcaatccttcataccggatcatctt 7023051
Score = 93.7 bits (47), Expect = 6e-16
Identities = 62/67 (92%)
Strand = Plus / Minus
Query: 344 accactaacaacgggtaggtcacaacagtagctcccagctttgctattgcacctaataaa 403
||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 7022192 accactagcaatgggtatgtcacaacagtagctccgagctttgctattgcacctaataag 7022133
Query: 404 aatacct 410
|||||||
Sbjct: 7022132 aatacct 7022126
Score = 81.8 bits (41), Expect = 2e-12
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 405 atacctccatagcagtgatgttcttcttggggaatcgctttccagaccgcttcgactgga 464
|||||||||||||||| | |||||| || |||| | ||||||||| | ||| ||| |||
Sbjct: 7021503 atacctccatagcagtaaggttcttttttgggagttcctttccagatctctttgaccgga 7021444
Query: 465 gacgctttgacagcgtttcatatatcataaactgaattgatggattgcatacc 517
||||||||| || |||||||| |||||||| || ||||||||||| ||||||
Sbjct: 7021443 gacgctttgccaatgtttcatagatcataaattgtattgatggattacatacc 7021391
Score = 60.0 bits (30), Expect = 9e-06
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 308 ctgccaatttcttgttttgcctgcaacctagact 341
|||||||||||||||||||| |||||||||||||
Sbjct: 7022774 ctgccaatttcttgttttgcttgcaacctagact 7022741
>dbj|AP005003.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0495C02
Length = 151467
Score = 115 bits (58), Expect = 2e-22
Identities = 67/70 (95%)
Strand = Plus / Minus
Query: 515 accataattagtgtcggaataagtcctttccagaatccacttatgcctgattcacgatag 574
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 24727 accataattagtgtcggaataagtcctttccagaatcctcttatgcctgattcacggtag 24668
Query: 575 acttcccgga 584
|| |||||||
Sbjct: 24667 acctcccgga 24658
Score = 101 bits (51), Expect = 3e-18
Identities = 84/95 (88%)
Strand = Plus / Minus
Query: 170 accataaaaaggaccgaggcggcaaaaacactctgtacaatctttgtgcccattcctttg 229
||||||||||| || ||||||||||| || |||||||||||||| || ||||||||||||
Sbjct: 26564 accataaaaagaactgaggcggcaaagacgctctgtacaatcttcgtacccattcctttg 26505
Query: 230 taaaatccgtgcaatccctcgtagcgaatcatctt 264
||||| ||||||||||| || || || ||||||||
Sbjct: 26504 taaaacccgtgcaatccttcataccggatcatctt 26470
Score = 93.7 bits (47), Expect = 6e-16
Identities = 62/67 (92%)
Strand = Plus / Minus
Query: 344 accactaacaacgggtaggtcacaacagtagctcccagctttgctattgcacctaataaa 403
||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 25611 accactagcaatgggtatgtcacaacagtagctccgagctttgctattgcacctaataag 25552
Query: 404 aatacct 410
|||||||
Sbjct: 25551 aatacct 25545
Score = 81.8 bits (41), Expect = 2e-12
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 405 atacctccatagcagtgatgttcttcttggggaatcgctttccagaccgcttcgactgga 464
|||||||||||||||| | |||||| || |||| | ||||||||| | ||| ||| |||
Sbjct: 24922 atacctccatagcagtaaggttcttttttgggagttcctttccagatctctttgaccgga 24863
Query: 465 gacgctttgacagcgtttcatatatcataaactgaattgatggattgcatacc 517
||||||||| || |||||||| |||||||| || ||||||||||| ||||||
Sbjct: 24862 gacgctttgccaatgtttcatagatcataaattgtattgatggattacatacc 24810
Score = 60.0 bits (30), Expect = 9e-06
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 308 ctgccaatttcttgttttgcctgcaacctagact 341
|||||||||||||||||||| |||||||||||||
Sbjct: 26193 ctgccaatttcttgttttgcttgcaacctagact 26160
>dbj|AP004779.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0470A03
Length = 133167
Score = 115 bits (58), Expect = 2e-22
Identities = 67/70 (95%)
Strand = Plus / Minus
Query: 515 accataattagtgtcggaataagtcctttccagaatccacttatgcctgattcacgatag 574
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 114930 accataattagtgtcggaataagtcctttccagaatcctcttatgcctgattcacggtag 114871
Query: 575 acttcccgga 584
|| |||||||
Sbjct: 114870 acctcccgga 114861
Score = 101 bits (51), Expect = 3e-18
Identities = 84/95 (88%)
Strand = Plus / Minus
Query: 170 accataaaaaggaccgaggcggcaaaaacactctgtacaatctttgtgcccattcctttg 229
||||||||||| || ||||||||||| || |||||||||||||| || ||||||||||||
Sbjct: 116767 accataaaaagaactgaggcggcaaagacgctctgtacaatcttcgtacccattcctttg 116708
Query: 230 taaaatccgtgcaatccctcgtagcgaatcatctt 264
||||| ||||||||||| || || || ||||||||
Sbjct: 116707 taaaacccgtgcaatccttcataccggatcatctt 116673
Score = 93.7 bits (47), Expect = 6e-16
Identities = 62/67 (92%)
Strand = Plus / Minus
Query: 344 accactaacaacgggtaggtcacaacagtagctcccagctttgctattgcacctaataaa 403
||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 115814 accactagcaatgggtatgtcacaacagtagctccgagctttgctattgcacctaataag 115755
Query: 404 aatacct 410
|||||||
Sbjct: 115754 aatacct 115748
Score = 81.8 bits (41), Expect = 2e-12
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 405 atacctccatagcagtgatgttcttcttggggaatcgctttccagaccgcttcgactgga 464
|||||||||||||||| | |||||| || |||| | ||||||||| | ||| ||| |||
Sbjct: 115125 atacctccatagcagtaaggttcttttttgggagttcctttccagatctctttgaccgga 115066
Query: 465 gacgctttgacagcgtttcatatatcataaactgaattgatggattgcatacc 517
||||||||| || |||||||| |||||||| || ||||||||||| ||||||
Sbjct: 115065 gacgctttgccaatgtttcatagatcataaattgtattgatggattacatacc 115013
Score = 60.0 bits (30), Expect = 9e-06
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 308 ctgccaatttcttgttttgcctgcaacctagact 341
|||||||||||||||||||| |||||||||||||
Sbjct: 116396 ctgccaatttcttgttttgcttgcaacctagact 116363
>gb|AC108759.2 | Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
OSJNBa0072P02, complete sequence
Length = 157488
Score = 107 bits (54), Expect = 4e-20
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 515 accataattagtgtcggaataagtcctttccagaatccacttatgcctgattcacgatag 574
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 154618 accataattagtgttggaataagtcctttccagaatcctcttatgcctgattcacggtag 154677
Query: 575 acttcccgga 584
|| |||||||
Sbjct: 154678 acctcccgga 154687
Score = 101 bits (51), Expect = 3e-18
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 170 accataaaaaggaccgaggcggcaaaaacactctgtacaatctttgtgcccattcctttg 229
||||||||||| || ||||||||||| || |||||||||||||| || ||||||||||||
Sbjct: 152798 accataaaaagaactgaggcggcaaagacgctctgtacaatcttcgtacccattcctttg 152857
Query: 230 taaaatccgtgcaatccctcgtagcgaatcatctt 264
||||| ||||||||||| || || || ||||||||
Sbjct: 152858 taaaacccgtgcaatccttcataccggatcatctt 152892
Score = 93.7 bits (47), Expect = 6e-16
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 344 accactaacaacgggtaggtcacaacagtagctcccagctttgctattgcacctaataaa 403
||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 153739 accactagcaatgggtatgtcacaacagtagctccgagctttgctattgcacctaataag 153798
Query: 404 aatacct 410
|||||||
Sbjct: 153799 aatacct 153805
Score = 89.7 bits (45), Expect = 1e-14
Identities = 96/113 (84%)
Strand = Plus / Plus
Query: 405 atacctccatagcagtgatgttcttcttggggaatcgctttccagaccgcttcgactgga 464
|||||||||||||||| | |||||| || |||| | ||||||||| | ||| ||| |||
Sbjct: 154422 atacctccatagcagtaaggttcttttttgggagttcctttccagatctctttgaccgga 154481
Query: 465 gacgctttgacagcgtttcatatatcataaactgaattgatggattgcatacc 517
||||||||| || |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 154482 gacgctttgccaatgtttcatagatcataaattgaattgatggattacatacc 154534
Score = 63.9 bits (32), Expect = 6e-07
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 282 tacctgtatatctggacgccgcgtttctgccaatttcttgttttgcctgcaacctagact 341
||||||| ||||||||| | | || |||||||||||||||||||| |||||||||||||
Sbjct: 153147 tacctgtgtatctggacatcacattcctgccaatttcttgttttgcttgcaacctagact 153206
>gb|AC137595.2 | Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
OSJNBa0094K23, complete sequence
Length = 167482
Score = 107 bits (54), Expect = 4e-20
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 515 accataattagtgtcggaataagtcctttccagaatccacttatgcctgattcacgatag 574
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 30799 accataattagtgttggaataagtcctttccagaatcctcttatgcctgattcacggtag 30858
Query: 575 acttcccgga 584
|| |||||||
Sbjct: 30859 acctcccgga 30868
Score = 101 bits (51), Expect = 3e-18
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 170 accataaaaaggaccgaggcggcaaaaacactctgtacaatctttgtgcccattcctttg 229
||||||||||| || ||||||||||| || |||||||||||||| || ||||||||||||
Sbjct: 28979 accataaaaagaactgaggcggcaaagacgctctgtacaatcttcgtacccattcctttg 29038
Query: 230 taaaatccgtgcaatccctcgtagcgaatcatctt 264
||||| ||||||||||| || || || ||||||||
Sbjct: 29039 taaaacccgtgcaatccttcataccggatcatctt 29073
Score = 93.7 bits (47), Expect = 6e-16
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 344 accactaacaacgggtaggtcacaacagtagctcccagctttgctattgcacctaataaa 403
||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 29920 accactagcaatgggtatgtcacaacagtagctccgagctttgctattgcacctaataag 29979
Query: 404 aatacct 410
|||||||
Sbjct: 29980 aatacct 29986
Score = 89.7 bits (45), Expect = 1e-14
Identities = 96/113 (84%)
Strand = Plus / Plus
Query: 405 atacctccatagcagtgatgttcttcttggggaatcgctttccagaccgcttcgactgga 464
|||||||||||||||| | |||||| || |||| | ||||||||| | ||| ||| |||
Sbjct: 30603 atacctccatagcagtaaggttcttttttgggagttcctttccagatctctttgaccgga 30662
Query: 465 gacgctttgacagcgtttcatatatcataaactgaattgatggattgcatacc 517
||||||||| || |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 30663 gacgctttgccaatgtttcatagatcataaattgaattgatggattacatacc 30715
Score = 63.9 bits (32), Expect = 6e-07
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 282 tacctgtatatctggacgccgcgtttctgccaatttcttgttttgcctgcaacctagact 341
||||||| ||||||||| | | || |||||||||||||||||||| |||||||||||||
Sbjct: 29328 tacctgtgtatctggacatcacattcctgccaatttcttgttttgcttgcaacctagact 29387
>dbj|AP008215.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 107 bits (54), Expect = 4e-20
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 515 accataattagtgtcggaataagtcctttccagaatccacttatgcctgattcacgatag 574
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 19435392 accataattagtgttggaataagtcctttccagaatcctcttatgcctgattcacggtag 19435451
Query: 575 acttcccgga 584
|| |||||||
Sbjct: 19435452 acctcccgga 19435461
Score = 101 bits (51), Expect = 3e-18
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 170 accataaaaaggaccgaggcggcaaaaacactctgtacaatctttgtgcccattcctttg 229
||||||||||| || ||||||||||| || |||||||||||||| || ||||||||||||
Sbjct: 19433572 accataaaaagaactgaggcggcaaagacgctctgtacaatcttcgtacccattcctttg 19433631
Query: 230 taaaatccgtgcaatccctcgtagcgaatcatctt 264
||||| ||||||||||| || || || ||||||||
Sbjct: 19433632 taaaacccgtgcaatccttcataccggatcatctt 19433666
Score = 93.7 bits (47), Expect = 6e-16
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 344 accactaacaacgggtaggtcacaacagtagctcccagctttgctattgcacctaataaa 403
||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 19434513 accactagcaatgggtatgtcacaacagtagctccgagctttgctattgcacctaataag 19434572
Query: 404 aatacct 410
|||||||
Sbjct: 19434573 aatacct 19434579
Score = 89.7 bits (45), Expect = 1e-14
Identities = 96/113 (84%)
Strand = Plus / Plus
Query: 405 atacctccatagcagtgatgttcttcttggggaatcgctttccagaccgcttcgactgga 464
|||||||||||||||| | |||||| || |||| | ||||||||| | ||| ||| |||
Sbjct: 19435196 atacctccatagcagtaaggttcttttttgggagttcctttccagatctctttgaccgga 19435255
Query: 465 gacgctttgacagcgtttcatatatcataaactgaattgatggattgcatacc 517
||||||||| || |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 19435256 gacgctttgccaatgtttcatagatcataaattgaattgatggattacatacc 19435308
Score = 63.9 bits (32), Expect = 6e-07
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 282 tacctgtatatctggacgccgcgtttctgccaatttcttgttttgcctgcaacctagact 341
||||||| ||||||||| | | || |||||||||||||||||||| |||||||||||||
Sbjct: 19433921 tacctgtgtatctggacatcacattcctgccaatttcttgttttgcttgcaacctagact 19433980
Score = 40.1 bits (20), Expect = 8.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 212 tttgtgcccattcctttgta 231
||||||||||||||||||||
Sbjct: 13862103 tttgtgcccattcctttgta 13862122
>gb|AC002062.1 |F20P5 Sequence of BAC F20P5 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 114505
Score = 40.1 bits (20), Expect = 8.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 149 aacttgaccagctcctcctt 168
||||||||||||||||||||
Sbjct: 51081 aacttgaccagctcctcctt 51062
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,569,696
Number of Sequences: 3902068
Number of extensions: 5569696
Number of successful extensions: 115059
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114749
Number of HSP's gapped (non-prelim): 308
length of query: 611
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 588
effective length of database: 17,143,297,704
effective search space: 10080259049952
effective search space used: 10080259049952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)