>RB_MOUSE (P13405) Retinoblastoma-associated protein (PP105) (RB)|
          Length = 921

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 156 ESNLSPKMEQHLQHCFQRSLSPRHHLPWLCPSPILHLVHSS--GQNPKNHSP 305
           E+NL+ +M +HL+ C  R +     L WL  SP+  L+  S  G+ P N  P
Sbjct: 533 EANLTREMIKHLERCEHRIM---ESLAWLSDSPLFDLIKQSKDGEGPDNLEP 581

>SEM4D_HUMAN (Q92854) Semaphorin-4D precursor (Leukocyte activation antigen|
           CD100) (BB18) (A8) (GR3)
          Length = 862

 Score = 32.7 bits (73), Expect = 0.48
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 267 VHSSGQNPKNHSPLALCMHAHICQTC*HKRSNFPVAWSPPTRS-LGFHQTRSQS 425
           V++   +    +PLA C     C+ C   R  +  AWSPPT + +  HQT S S
Sbjct: 487 VYAGSNSGVVQAPLAFCGKHGTCEDCVLARDPY-CAWSPPTATCVALHQTESPS 539

>RB_RAT (P33568) Retinoblastoma-associated protein (PP105) (RB) (Fragment)|
          Length = 899

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 156 ESNLSPKMEQHLQHCFQRSLSPRHHLPWLCPSPILHLVHSS--GQNP 290
           E+NL+ +M +HL+ C  R +     L WL  SP+  L+  S  G+ P
Sbjct: 511 EANLTREMIKHLERCEHRIM---ESLAWLSDSPLFDLIKQSKDGEGP 554

>LDOX_VITVI (P51093) Leucoanthocyanidin dioxygenase (EC 1.14.11.19) (LDOX)|
           (Leucocyanidin oxygenase) (Leucoanthocyanidin
           hydroxylase)
          Length = 362

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 195 HCFQRSLSPRHHLPWLCPSPILHLVHSSGQNPKNHSP 305
           HC +R L   HH   L P P +    SSG+  + +SP
Sbjct: 323 HCQRRCLRLSHHSSHLAPFPNIFSTSSSGRPRRLYSP 359

>NECP2_RAT (Q6P756) Adaptin ear-binding coat-associated protein 2 (NECAP-2)|
          Length = 263

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 179 GATSSTLLPEVFESPASSSLVVPVTNSSFSAL*WTESKESFTSCA 313
           G   STL+P   E  +  SLV PV+ S  +   W +SK +  + A
Sbjct: 193 GGKMSTLIPPSGEQFSGGSLVQPVSGSGGATELWPQSKPAAAATA 237


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,607,805
Number of Sequences: 219361
Number of extensions: 1598350
Number of successful extensions: 3798
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3798
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)