Clone Name | rbah61f09 |
---|---|
Clone Library Name | barley_pub |
>emb|AL355357.13| Human DNA sequence from clone RP11-69I22 on chromosome 6, complete sequence Length = 116261 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 57 atagttatccatatatacatacttaaa 83 ||||||||||| ||||||||||||||| Sbjct: 87534 atagttatccacatatacatacttaaa 87508
>gb|AE014833.1| Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence Length = 252394 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 68 tatatacatacttaaattttacattg 93 |||||||| ||||||||||||||||| Sbjct: 199812 tatatacacacttaaattttacattg 199837
>gb|AC161250.2| Mus musculus BAC clone RP24-553E23 from chromosome 9, complete sequence Length = 189036 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 66 catatatacatacttaaatttt 87 |||||||||||||||||||||| Sbjct: 120512 catatatacatacttaaatttt 120533
>gb|AY216264.1| Plasmodium falciparum D6 adenosine deaminase mRNA, complete cds Length = 1104 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 68 tatatacatacttaaattttacattg 93 |||||||| ||||||||||||||||| Sbjct: 989 tatatacacacttaaattttacattg 1014
>gb|AC100956.9| Mus musculus chromosome 7, clone RP23-74B10, complete sequence Length = 245367 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 273 tctagtggacagaatccaaaga 294 |||||||||||||||||||||| Sbjct: 66941 tctagtggacagaatccaaaga 66920
>gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosome 8, complete sequence Length = 228750 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 gcaacatcttcaacattgctt 202 ||||||||||||||||||||| Sbjct: 149696 gcaacatcttcaacattgctt 149716
>gb|AC078958.30| Homo sapiens X BAC RP11-609C15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187547 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 agcaacatcttcaacattgct 201 ||||||||||||||||||||| Sbjct: 21005 agcaacatcttcaacattgct 21025
>gb|AC159747.8| Mus musculus 10 BAC RP23-416G20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194198 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 gaatccaaagaatcattcacc 304 ||||||||||||||||||||| Sbjct: 4225 gaatccaaagaatcattcacc 4205
>gb|AC153887.6| Mus musculus 10 BAC RP23-473N3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 165306 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 gaatccaaagaatcattcacc 304 ||||||||||||||||||||| Sbjct: 152245 gaatccaaagaatcattcacc 152225
>emb|CT573090.2| RP43-052E01, complete sequence Length = 161118 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 agcaacatcttcaacattgct 201 ||||||||||||||||||||| Sbjct: 60470 agcaacatcttcaacattgct 60450
>gb|AC132311.2| Mus musculus BAC clone RP24-297P22 from 8, complete sequence Length = 164783 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 gcaacatcttcaacattgctt 202 ||||||||||||||||||||| Sbjct: 25336 gcaacatcttcaacattgctt 25356
>emb|Y12462.1|MMDNASEL1 M.musculus selel gene, promoter sequence and part of exon1 Length = 1868 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 gcaacatcttcaacattgctt 202 ||||||||||||||||||||| Sbjct: 213 gcaacatcttcaacattgctt 193
>ref|XM_632153.1| Dictyostelium discoideum hypothetical protein (DDB0219223), partial mRNA Length = 888 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 caaatgaaaaaaccaaacat 123 |||||||||||||||||||| Sbjct: 767 caaatgaaaaaaccaaacat 786
>gb|AC123837.5| Mus musculus BAC clone RP23-385F8 from chromosome 7, complete sequence Length = 208880 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ccatatatacatacttaaat 84 |||||||||||||||||||| Sbjct: 119572 ccatatatacatacttaaat 119553
>gb|AC132402.3| Mus musculus BAC clone RP23-404I24 from chromosome 19, complete sequence Length = 217490 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ttgcttccagaggtctttgagtcc 220 |||||||||||||||| ||||||| Sbjct: 151501 ttgcttccagaggtctctgagtcc 151524
>emb|BX005408.12| Zebrafish DNA sequence from clone DKEY-156H23 in linkage group 9, complete sequence Length = 210207 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 tgtcaatacaaatgaaaaaa 115 |||||||||||||||||||| Sbjct: 78486 tgtcaatacaaatgaaaaaa 78505
>emb|BX901913.8| Zebrafish DNA sequence from clone CH211-241E15 in linkage group 1, complete sequence Length = 142370 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 ttaaattttacattgtttgt 98 |||||||||||||||||||| Sbjct: 131884 ttaaattttacattgtttgt 131903
>emb|AL139247.12| Human DNA sequence from clone RP1-52J10 on chromosome 1 Contains the SPRL3A gene for small proline rich-like (epidermal differentiation complex) 3A, the LEP14 gene for late envelope protein 14, the LEP13 gene for late envelope protein 13, a small proline rich-like (epidermal differentiation complex) 1B (SPRL1B) pseudogene, a novel gene, the SPRL1A gene for small proline rich-like (epidermal differentiation complex) 1A, the LEP11 gene for late envelope protein 11 and the SPRL1B gene for small proline rich-like (epidermal differentiation complex) 1B, complete sequence Length = 117084 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 acaaatgaaaaaaccaaaca 122 |||||||||||||||||||| Sbjct: 65260 acaaatgaaaaaaccaaaca 65279
>gb|AC152893.4| Saimiri boliviensis boliviensis clone CH254-211C3, complete sequence Length = 122416 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 atatatacatacttaaattt 86 |||||||||||||||||||| Sbjct: 75729 atatatacatacttaaattt 75748
>ref|NM_136775.2| Drosophila melanogaster CG12344-RA (CG12344), mRNA Length = 2844 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tgcttccagaggtctttgag 217 |||||||||||||||||||| Sbjct: 596 tgcttccagaggtctttgag 615
>gb|AY094938.1| Drosophila melanogaster RH55021 full insert cDNA Length = 2861 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tgcttccagaggtctttgag 217 |||||||||||||||||||| Sbjct: 597 tgcttccagaggtctttgag 616
>dbj|AK141213.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330008J18 product:CD6 antigen, full insert sequence Length = 2174 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ttgcttccagaggtctttgagtcc 220 |||||||||||||||| ||||||| Sbjct: 1822 ttgcttccagaggtctctgagtcc 1845
>gb|AC151986.4| Mus musculus BAC clone RP23-365E22 from chromosome 7, complete sequence Length = 199337 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ccatatatacatacttaaat 84 |||||||||||||||||||| Sbjct: 18519 ccatatatacatacttaaat 18538
>dbj|AK088050.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430002N11 product:CD6 antigen, full insert sequence Length = 2894 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ttgcttccagaggtctttgagtcc 220 |||||||||||||||| ||||||| Sbjct: 2542 ttgcttccagaggtctctgagtcc 2565
>gb|AC092078.2|AC092078 Homo sapiens chromosome 15 clone CTD-2007H18 map 15q21.1, complete sequence Length = 113915 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 caatacaaatgaaaaaaccaaaca 122 ||||||||||| |||||||||||| Sbjct: 34404 caatacaaatgtaaaaaccaaaca 34427
>dbj|AK030823.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830412L18 product:CD6 antigen, full insert sequence Length = 3028 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ttgcttccagaggtctttgagtcc 220 |||||||||||||||| ||||||| Sbjct: 2676 ttgcttccagaggtctctgagtcc 2699
>dbj|AK030822.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830412L05 product:T-CELL DIFFERENTIATION ANTIGEN CD6 PRECURSOR, full insert sequence Length = 2998 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ttgcttccagaggtctttgagtcc 220 |||||||||||||||| ||||||| Sbjct: 2645 ttgcttccagaggtctctgagtcc 2668
>gb|AC008260.5|AC008260 Drosophila melanogaster, chromosome 2R, region 47B-47C, BAC clone BACR13J10, complete sequence Length = 140940 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tgcttccagaggtctttgag 217 |||||||||||||||||||| Sbjct: 29250 tgcttccagaggtctttgag 29231
>emb|BX936295.3| Mouse DNA sequence from clone RP23-256P1 on chromosome 2, complete sequence Length = 56898 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tgtccatcaatgccagtttc 147 |||||||||||||||||||| Sbjct: 28920 tgtccatcaatgccagtttc 28901
>gb|AC112695.3| Homo sapiens BAC clone RP11-9B6 from 4, complete sequence Length = 109860 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 aaattttacattgtttgtca 100 |||||||||||||||||||| Sbjct: 38519 aaattttacattgtttgtca 38538
>gb|AC025167.6|AC025167 Homo sapiens chromosome 15 clone CTD-2556B7 map 15q21.1, complete sequence Length = 97990 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 caatacaaatgaaaaaaccaaaca 122 ||||||||||| |||||||||||| Sbjct: 50045 caatacaaatgtaaaaaccaaaca 50068
>gb|AC008459.7| Homo sapiens chromosome 5 clone CTC-352D11, complete sequence Length = 136581 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 aaaaaccaaacattaagtgt 130 |||||||||||||||||||| Sbjct: 73039 aaaaaccaaacattaagtgt 73058
>emb|AL954193.12| Mouse DNA sequence from clone RP23-130G4 on chromosome X, complete sequence Length = 52879 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ccatatatacatacttaaat 84 |||||||||||||||||||| Sbjct: 18032 ccatatatacatacttaaat 18051
>gb|AC007016.5|AC007016 Homo sapiens chromosome 4 clone C0478G20 map 4p16, complete sequence Length = 172568 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 acatagttatccatatatacatac 78 ||||| |||||||||||||||||| Sbjct: 16971 acatacttatccatatatacatac 16948
>gb|AE003828.4| Drosophila melanogaster chromosome 2R, section 22 of 73 of the complete sequence Length = 257907 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tgcttccagaggtctttgag 217 |||||||||||||||||||| Sbjct: 190200 tgcttccagaggtctttgag 190181
>dbj|AP003027.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-25I9, complete sequence Length = 167067 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 acaaatgaaaaaaccaaaca 122 |||||||||||||||||||| Sbjct: 136609 acaaatgaaaaaaccaaaca 136628
>gb|BC014294.1| Mus musculus CD6 antigen, mRNA (cDNA clone MGC:14018 IMAGE:4187689), complete cds Length = 3057 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ttgcttccagaggtctttgagtcc 220 |||||||||||||||| ||||||| Sbjct: 2680 ttgcttccagaggtctctgagtcc 2703
>gb|U35370.1|MMU35370 Mus musculus T cell accessory signal receptor (CD6) mRNA, complete cds Length = 2842 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ttgcttccagaggtctttgagtcc 220 |||||||||||||||| ||||||| Sbjct: 2474 ttgcttccagaggtctctgagtcc 2497
>ref|NM_001037801.1| Mus musculus CD6 antigen (Cd6), mRNA Length = 2842 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ttgcttccagaggtctttgagtcc 220 |||||||||||||||| ||||||| Sbjct: 2474 ttgcttccagaggtctctgagtcc 2497
>ref|NM_009852.2| Mus musculus CD6 antigen (Cd6), mRNA Length = 3057 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ttgcttccagaggtctttgagtcc 220 |||||||||||||||| ||||||| Sbjct: 2680 ttgcttccagaggtctctgagtcc 2703
>gb|AC142274.3| Mus musculus BAC clone RP23-251M14 from 6, complete sequence Length = 179732 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 53 tcacatagttatccatatatacatactt 80 ||||||| ||||||||||||||||||| Sbjct: 103879 tcacatacatatccatatatacatactt 103906
>gb|U37544.1|MMU37544 Mus musculus T cell surface glycoprotein CD6 mRNA, complete cds Length = 2522 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ttgcttccagaggtctttgagtcc 220 |||||||||||||||| ||||||| Sbjct: 2173 ttgcttccagaggtctctgagtcc 2196
>gb|U37543.1|MMU37543 Mus musculus T cell surface glycoprotein CD6 mRNA, complete cds Length = 2985 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ttgcttccagaggtctttgagtcc 220 |||||||||||||||| ||||||| Sbjct: 2636 ttgcttccagaggtctctgagtcc 2659
>gb|U12434.1|MMU12434 Mus musculus mscd6 precursor (Cd6) mRNA, complete cds Length = 2583 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ttgcttccagaggtctttgagtcc 220 |||||||||||||||| ||||||| Sbjct: 2356 ttgcttccagaggtctctgagtcc 2379 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,350,977 Number of Sequences: 3902068 Number of extensions: 5350977 Number of successful extensions: 115392 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115308 Number of HSP's gapped (non-prelim): 84 length of query: 470 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 448 effective length of database: 17,147,199,772 effective search space: 7681945497856 effective search space used: 7681945497856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)