Clone Name | rbah61f08 |
---|---|
Clone Library Name | barley_pub |
>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response| factor 2) (ERF-2) Length = 492 Score = 33.1 bits (74), Expect = 0.58 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 1/89 (1%) Frame = +3 Query: 102 CIDIKACTTHA*AMHGCI*TTSIERAKSTAITCCPGAAASAAHLLGTSATGRTSAHELLS 281 C +C++ A + + S S A TCC AAA+AA L GT A +LL+ Sbjct: 293 CSSASSCSSSASSCS----SASAASTPSGAPTCCASAAAAAALLYGTG-----GAEDLLA 343 Query: 282 -ALPTLITTTWSSAGTFHASFPSLASLAT 365 P ++ S A A P L+SL T Sbjct: 344 PGAPCAACSSASCANNAFAFGPELSSLIT 372
>PRY3_YEAST (P47033) Protein PRY3 (Pathogen related in Sc 3)| Length = 881 Score = 30.8 bits (68), Expect = 2.9 Identities = 22/73 (30%), Positives = 36/73 (49%) Frame = +3 Query: 159 TTSIERAKSTAITCCPGAAASAAHLLGTSATGRTSAHELLSALPTLITTTWSSAGTFHAS 338 TT++E + +T IT A + L T+A T A ++ PTL T S++ T +A Sbjct: 542 TTTLENSSTTTIT----AITKSTTTLATTANNSTRAATAVTIDPTLDPTDNSASPTDNAK 597 Query: 339 FPSLASLATTGVA 377 S ++TG + Sbjct: 598 HTSTYGSSSTGAS 610
>YAJR_ECOLI (P77726) Inner membrane transport protein yajR| Length = 454 Score = 30.8 bits (68), Expect = 2.9 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +3 Query: 330 HASFPSLASLATTGVAFM*NM*RTIWIIPN 419 HA F +A LATTG+A TIW++PN Sbjct: 165 HALFWMIAILATTGIAL------TIWVVPN 188
>MIB1_BRARE (Q804S5) Ubiquitin ligase protein mib (EC 6.3.2.-) (Mind bomb| protein) Length = 1030 Score = 29.6 bits (65), Expect = 6.4 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 4/98 (4%) Frame = +3 Query: 36 TEQRHCIPCMRESTAPHTLQKGCIDIKACTTHA*AMHGCI*TTSIERAKSTAITCCPGA- 212 T+ C+ C + A L + C + AC A M C+ ++ ++ + CC G Sbjct: 859 TKIEECVVCSDKKAA--VLFQPCGHMCACENCASLMKKCVQCRAVVERRTPFVLCCGGKG 916 Query: 213 ---AASAAHLLGTSATGRTSAHELLSALPTLITTTWSS 317 A L G S + + +LL P + +WSS Sbjct: 917 MEDATDDEDLTGGSNSMAGGSQDLLQ--PNNLALSWSS 952
>SYE_SULSO (P95968) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 575 Score = 29.3 bits (64), Expect = 8.4 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Frame = -1 Query: 503 HPQRRRLVPLRPAHQGQI--RRAPKHPWLHIRDDPDGPLHVLHERDA 369 H ++R+++P P +GQ+ R AP +PDGPLH+ + R A Sbjct: 85 HEEKRKVLPPLPNVKGQVVTRFAP---------NPDGPLHLGNARSA 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,580,026 Number of Sequences: 219361 Number of extensions: 1317728 Number of successful extensions: 4257 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 4111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4251 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)