Clone Name | rbah61f07 |
---|---|
Clone Library Name | barley_pub |
>ATM_ARATH (Q9M3G7) Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Ataxia| telangiectasia mutated homolog) (AtATM) Length = 3856 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Frame = +3 Query: 93 LRNSLCFHLYLSNLKKKNLDTT---FLPSASPSWSLYGASHSETPSFSLFQTHTDVD 254 L + FH S + L T F+P+A P + ++ SH P+ L + HT++D Sbjct: 1975 LLGPILFHWIASGVSLAGLIETSQLFIPNAEPKYFIHFCSHWLLPALLLHEDHTNLD 2031
>COPG_YEAST (P32074) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 935 Score = 29.6 bits (65), Expect = 4.2 Identities = 22/79 (27%), Positives = 39/79 (49%) Frame = -3 Query: 428 THLVCAELRGKLSSNVSRVVANAQTTCSDLV*DCKYDLLDMVLCIGINFCSSMTFVVDIN 249 T+ + L+ S N+S +++ D+ D K ++D V + +NF +++ Sbjct: 360 TYAITTLLKTGTSKNISSLISTITNFIHDVSDDFKIIIIDAVRTLSLNFPQEWKSILNFL 419 Query: 248 IGVSLK*AEGWGFRVTCSI 192 I V LK +EG GF+ SI Sbjct: 420 IDV-LKNSEG-GFKFKNSI 436
>FDHF_ECOLI (P07658) Formate dehydrogenase H (EC 1.2.1.2)| (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide) (Formate dehydrogenase-H alpha subunit) (FDH-H) Length = 715 Score = 29.3 bits (64), Expect = 5.5 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -2 Query: 237 SEIS*RMGFPSDLLHTNSRKD*QRVEKLCPDFFSLD*TNRGE 112 SEI+ RMG+P + + N+++ + LCPDF+ GE Sbjct: 483 SEIATRMGYP--MHYNNTQEIWDELRHLCPDFYGATYEKMGE 522
>CL011_HUMAN (Q9NVM9) Protein C12orf11 (Sarcoma antigen NY-SAR-95)| Length = 706 Score = 28.9 bits (63), Expect = 7.2 Identities = 15/63 (23%), Positives = 27/63 (42%) Frame = +1 Query: 235 RLTPMLMSTTKVMELQKLIPMHNTISSRSYLQSYTRSEQVVCXXXXXXXXXEDSFPLSSA 414 R PM++S T + +Q ++P+ + I S + + Q D P+S+ Sbjct: 457 RYWPMIISQTTIFNMQAVVPLASVIVKESLTEEDVLNCQKTIYNLVDMERKNDPLPISTV 516 Query: 415 QTR 423 TR Sbjct: 517 GTR 519
>DUS1_HUMAN (P28562) Dual specificity protein phosphatase 1 (EC 3.1.3.48) (EC| 3.1.3.16) (MAP kinase phosphatase 1) (MKP-1) (Protein-tyrosine phosphatase CL100) (Dual specificity protein phosphatase hVH1) Length = 367 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = +1 Query: 256 STTKVMELQKLIPMHNTISSRSYLQS 333 STT V IP+H+T S+ SYLQS Sbjct: 334 STTTVFNFPVSIPVHSTNSALSYLQS 359 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,159,017 Number of Sequences: 219361 Number of extensions: 1245065 Number of successful extensions: 2675 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2627 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2674 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)