>ATM_ARATH (Q9M3G7) Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Ataxia|
            telangiectasia mutated homolog) (AtATM)
          Length = 3856

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 93   LRNSLCFHLYLSNLKKKNLDTT---FLPSASPSWSLYGASHSETPSFSLFQTHTDVD 254
            L   + FH   S +    L  T   F+P+A P + ++  SH   P+  L + HT++D
Sbjct: 1975 LLGPILFHWIASGVSLAGLIETSQLFIPNAEPKYFIHFCSHWLLPALLLHEDHTNLD 2031

>COPG_YEAST (P32074) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)|
          Length = 935

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 22/79 (27%), Positives = 39/79 (49%)
 Frame = -3

Query: 428 THLVCAELRGKLSSNVSRVVANAQTTCSDLV*DCKYDLLDMVLCIGINFCSSMTFVVDIN 249
           T+ +   L+   S N+S +++       D+  D K  ++D V  + +NF      +++  
Sbjct: 360 TYAITTLLKTGTSKNISSLISTITNFIHDVSDDFKIIIIDAVRTLSLNFPQEWKSILNFL 419

Query: 248 IGVSLK*AEGWGFRVTCSI 192
           I V LK +EG GF+   SI
Sbjct: 420 IDV-LKNSEG-GFKFKNSI 436

>FDHF_ECOLI (P07658) Formate dehydrogenase H (EC 1.2.1.2)|
           (Formate-hydrogen-lyase-linked,
           selenocysteine-containing polypeptide) (Formate
           dehydrogenase-H alpha subunit) (FDH-H)
          Length = 715

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 237 SEIS*RMGFPSDLLHTNSRKD*QRVEKLCPDFFSLD*TNRGE 112
           SEI+ RMG+P  + + N+++    +  LCPDF+       GE
Sbjct: 483 SEIATRMGYP--MHYNNTQEIWDELRHLCPDFYGATYEKMGE 522

>CL011_HUMAN (Q9NVM9) Protein C12orf11 (Sarcoma antigen NY-SAR-95)|
          Length = 706

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +1

Query: 235 RLTPMLMSTTKVMELQKLIPMHNTISSRSYLQSYTRSEQVVCXXXXXXXXXEDSFPLSSA 414
           R  PM++S T +  +Q ++P+ + I   S  +    + Q             D  P+S+ 
Sbjct: 457 RYWPMIISQTTIFNMQAVVPLASVIVKESLTEEDVLNCQKTIYNLVDMERKNDPLPISTV 516

Query: 415 QTR 423
            TR
Sbjct: 517 GTR 519

>DUS1_HUMAN (P28562) Dual specificity protein phosphatase 1 (EC 3.1.3.48) (EC|
           3.1.3.16) (MAP kinase phosphatase 1) (MKP-1)
           (Protein-tyrosine phosphatase CL100) (Dual specificity
           protein phosphatase hVH1)
          Length = 367

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 256 STTKVMELQKLIPMHNTISSRSYLQS 333
           STT V      IP+H+T S+ SYLQS
Sbjct: 334 STTTVFNFPVSIPVHSTNSALSYLQS 359


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,159,017
Number of Sequences: 219361
Number of extensions: 1245065
Number of successful extensions: 2675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2674
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)