Clone Name | rbah61f07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_480175.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1482 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 418 acaagatgtgtcaagaggagcccagcaagaagtgctgctgccatcaacatcgtgaacac 476 ||||| ||||||||||||||||||||||| || ||||||||||| | |||||||||||| Sbjct: 1397 acaagttgtgtcaagaggagcccagcaaggagagctgctgccataagcatcgtgaacac 1339
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 418 acaagatgtgtcaagaggagcccagcaagaagtgctgctgccatcaacatcgtgaacac 476 ||||| ||||||||||||||||||||||| || ||||||||||| | |||||||||||| Sbjct: 3277539 acaagttgtgtcaagaggagcccagcaaggagagctgctgccataagcatcgtgaacac 3277481
>dbj|AK121377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127F09, full insert sequence Length = 2278 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 418 acaagatgtgtcaagaggagcccagcaagaagtgctgctgccatcaacatcgtgaacac 476 ||||| ||||||||||||||||||||||| || ||||||||||| | |||||||||||| Sbjct: 1692 acaagttgtgtcaagaggagcccagcaaggagagctgctgccataagcatcgtgaacac 1634
>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0438H08 Length = 148626 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 418 acaagatgtgtcaagaggagcccagcaagaagtgctgctgccatcaacatcgtgaacac 476 ||||| ||||||||||||||||||||||| || ||||||||||| | |||||||||||| Sbjct: 55106 acaagttgtgtcaagaggagcccagcaaggagagctgctgccataagcatcgtgaacac 55048
>dbj|AK063143.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-G11, full insert sequence Length = 1138 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 418 acaagatgtgtcaagaggagcccagcaagaagtgctgctgccatcaacatcgtgaacac 476 ||||| ||||||||||||||||||||||| || ||||||||||| | |||||||||||| Sbjct: 895 acaagttgtgtcaagaggagcccagcaaggagagctgctgccataagcatcgtgaacac 837
>gb|BT017145.1| Zea mays clone EL01N0366H04.c mRNA sequence Length = 935 Score = 46.1 bits (23), Expect = 0.10 Identities = 44/51 (86%) Strand = Plus / Minus Query: 428 tcaagaggagcccagcaagaagtgctgctgccatcaacatcgtgaacacgg 478 |||||||||||||||| || || || || ||||||| ||| |||||||||| Sbjct: 525 tcaagaggagcccagcgaggagagccgccgccatcagcatggtgaacacgg 475
>gb|AY105764.1| Zea mays PCO101103 mRNA sequence Length = 686 Score = 46.1 bits (23), Expect = 0.10 Identities = 44/51 (86%) Strand = Plus / Minus Query: 428 tcaagaggagcccagcaagaagtgctgctgccatcaacatcgtgaacacgg 478 |||||||||||||||| || || || || ||||||| ||| |||||||||| Sbjct: 240 tcaagaggagcccagcgaggagagccgccgccatcagcatggtgaacacgg 190
>emb|AL627310.5| Human DNA sequence from clone RP11-199P24 on chromosome 1, complete sequence Length = 139407 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 57 tatttacaaggcactagaaaag 78 |||||||||||||||||||||| Sbjct: 58551 tatttacaaggcactagaaaag 58572
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome Length = 1767403 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 265 aaggtcatggagctacaaaaattgat 290 ||||||||||||||||||||| |||| Sbjct: 1497399 aaggtcatggagctacaaaaaatgat 1497424
>ref|XM_509030.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ31295 (LOC451864), mRNA Length = 1353 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 442 gcaagaagtgctgctgccatc 462 ||||||||||||||||||||| Sbjct: 413 gcaagaagtgctgctgccatc 393
>gb|AC068605.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-284I15, complete sequence Length = 198551 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 atatgcagtgatacaagcaaa 28 ||||||||||||||||||||| Sbjct: 29840 atatgcagtgatacaagcaaa 29820
>gb|AC145791.2| Xenopus tropicalis clone CH216-136M10, complete sequence Length = 138176 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 305 ccatatcgagcagatcatact 325 ||||||||||||||||||||| Sbjct: 72319 ccatatcgagcagatcatact 72299
>gb|AC121497.15| Mus musculus chromosome 6, clone RP23-2M23, complete sequence Length = 231059 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 atatgcagtgatacaagcaaa 28 ||||||||||||||||||||| Sbjct: 125991 atatgcagtgatacaagcaaa 126011
>emb|BX679670.2| Zebrafish DNA sequence from clone CH211-286D16 in linkage group 5, complete sequence Length = 150298 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 cttcctggagtttgtatggag 198 ||||||||||||||||||||| Sbjct: 28330 cttcctggagtttgtatggag 28310
>emb|BX901929.9| Zebrafish DNA sequence from clone DKEY-11K24 in linkage group 4, complete sequence Length = 70937 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 agcagatcatacttacaatct 333 ||||||||||||||||||||| Sbjct: 17364 agcagatcatacttacaatct 17344
>gb|AC005409.1| Homo sapiens chromosome 12 clone 14951, complete sequence Length = 177364 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ctgaacaggtggtttgtgca 363 |||||||||||||||||||| Sbjct: 61902 ctgaacaggtggtttgtgca 61883
>emb|AL136130.7| Human DNA sequence from clone RP1-39M18 on chromosome 6q26-27 Contains part of the PDE10A gene for phosphodiesterase 10A, complete sequence Length = 69674 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ttttctaccctctgctagtc 177 |||||||||||||||||||| Sbjct: 23721 ttttctaccctctgctagtc 23702
>gb|AC060775.5| Homo sapiens chromosome 8, clone RP11-678D18, complete sequence Length = 201956 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 cagatcatacttacaatctt 334 |||||||||||||||||||| Sbjct: 118217 cagatcatacttacaatctt 118198
>gb|AC063950.37| Homo sapiens 12 BAC RP11-511H9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174231 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ctgaacaggtggtttgtgca 363 |||||||||||||||||||| Sbjct: 55574 ctgaacaggtggtttgtgca 55555
>gb|AC107065.5| Bos taurus clone rp42-513g13, complete sequence Length = 175949 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 146 tctggacacaacttttctaccctctgct 173 ||||||||||||||| ||| |||||||| Sbjct: 111234 tctggacacaactttgctatcctctgct 111207
>tpg|BK005280.1| TPA: TPA_inf: Anopheles gambiae str. PEST troponin I (TpnI) gene, complete cds, alternatively spliced Length = 23207 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 atatcgagcagatcatactt 326 |||||||||||||||||||| Sbjct: 2053 atatcgagcagatcatactt 2034
>emb|BX284616.13| Zebrafish DNA sequence from clone DKEY-192I20 in linkage group 19, complete sequence Length = 223573 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 agtgctgctgccatcaacat 467 |||||||||||||||||||| Sbjct: 99313 agtgctgctgccatcaacat 99294
>gb|AC104698.2| Homo sapiens BAC clone RP11-517F1 from 2, complete sequence Length = 115170 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 tcagcttatttcagactcac 242 |||||||||||||||||||| Sbjct: 85952 tcagcttatttcagactcac 85933
>gb|AC079750.5| Homo sapiens BAC clone RP11-33L3 from 2, complete sequence Length = 103089 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ttattgcccaattcctattt 61 |||||||||||||||||||| Sbjct: 28347 ttattgcccaattcctattt 28366
>dbj|AP002806.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-721F8, complete sequence Length = 161871 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 cattggcaacaaccctgctc 381 |||||||||||||||||||| Sbjct: 129750 cattggcaacaaccctgctc 129731
>dbj|AP002856.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-816H13, complete sequence Length = 227942 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 cattggcaacaaccctgctc 381 |||||||||||||||||||| Sbjct: 7904 cattggcaacaaccctgctc 7885
>emb|CT010468.16| Mouse DNA sequence from clone RP23-315J19 on chromosome 13, complete sequence Length = 155441 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 acaatcttacactagatctg 346 |||||||||||||||||||| Sbjct: 127784 acaatcttacactagatctg 127765
>emb|BX293540.5| Zebrafish DNA sequence from clone DKEY-255N2 in linkage group 8, complete sequence Length = 181168 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 agtgctgctgccatcaacat 467 |||||||||||||||||||| Sbjct: 130025 agtgctgctgccatcaacat 130044
>emb|AL732420.13| Mouse DNA sequence from clone RP23-84O5 on chromosome X, complete sequence Length = 191312 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 cactcggaaaccccatcctt 223 |||||||||||||||||||| Sbjct: 168874 cactcggaaaccccatcctt 168855 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,657,944 Number of Sequences: 3902068 Number of extensions: 4657944 Number of successful extensions: 75850 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75782 Number of HSP's gapped (non-prelim): 68 length of query: 478 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 456 effective length of database: 17,147,199,772 effective search space: 7819123096032 effective search space used: 7819123096032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)