ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61e22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloropla... 55 4e-08
2CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast... 36 0.031
3CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloropla... 35 0.068
4CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloropl... 35 0.068
5CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloropl... 35 0.068
6CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloropl... 35 0.068
7CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 membe... 35 0.068
8CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloropl... 35 0.068
9CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloropl... 35 0.068
10CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloropl... 35 0.068
11CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloropla... 35 0.068
12CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloropl... 35 0.068
13CB2D_LYCES (P10707) Chlorophyll a-b binding protein 1D (LHCII ty... 35 0.068
14CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast... 35 0.068
15CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloropla... 35 0.068
16CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloropl... 35 0.068
17CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chlorop... 35 0.068
18CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloropl... 35 0.068
19CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chlorop... 35 0.068
20CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloropla... 35 0.068
21CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloropla... 35 0.068
22CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII typ... 35 0.068
23CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloropla... 35 0.068
24CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII ty... 35 0.068
25CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chl... 35 0.068
26CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 membe... 35 0.068
27CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloropla... 35 0.068
28CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloropl... 35 0.068
29CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloropl... 35 0.068
30CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloropla... 35 0.068
31CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloropl... 35 0.068
32CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII typ... 35 0.068
33CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloropl... 35 0.068
34CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast... 35 0.068
35CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloropl... 35 0.068
36CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloropla... 35 0.068
37CB21_RAPSA (P14584) Chlorophyll a-b binding of LHCII type 1 prot... 35 0.068
38CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast... 34 0.12
39CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloropl... 34 0.12
40CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloropl... 34 0.12
41CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloropla... 34 0.12
42CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chlorop... 33 0.15
43CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast... 33 0.20
44CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloropla... 33 0.26
45CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloro... 33 0.26
46CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chlorop... 32 0.44
47CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast... 32 0.44
48CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloropla... 32 0.44
49CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloropla... 32 0.58
50CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII typ... 32 0.58
51CB22_PINSY (P15192) Chlorophyll a-b binding protein type 2 membe... 32 0.58
52CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chlo... 32 0.58
53CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloropl... 31 0.75
54CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloropl... 31 0.99
55CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type... 31 0.99
56CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII typ... 31 0.99
57CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast ... 31 0.99
58CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast... 31 0.99
59CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloropl... 30 1.3
60CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloropla... 30 1.3
61CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloropla... 30 1.3
62CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type... 30 2.2
63CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 membe... 29 2.9
64CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloropl... 29 3.7
65CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type... 29 3.7
66CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type... 28 8.3

>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCI type III CAB-8)
          Length = 273

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 23/26 (88%), Positives = 26/26 (100%)
 Frame = -2

Query: 229 VGPFQNLLDHLSDPVNNNILTSLKFH 152
           VGP+QNLLDHL+DPVNNN+LTSLKFH
Sbjct: 248 VGPYQNLLDHLADPVNNNVLTSLKFH 273



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>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCII type I CAB-8)
          Length = 268

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHLSDPVNNN
Sbjct: 240 GPLENLADHLSDPVNNN 256



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>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 233 GPLENLADHLADPVNNN 249



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>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor|
           (LHCII type I CAB-1C) (LHCP) (Fragments)
          Length = 265

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 237 GPLENLADHLADPVNNN 253



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>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 237 GPLENLADHLADPVNNN 253



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>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type II CAB-1A) (LHCP)
          Length = 278

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 250 GPIENLADHLADPVNNN 266



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>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1A) (CAB) (LHCP)
          Length = 278

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 250 GPIENLADHLADPVNNN 266



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>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type I CAB-1A) (LHCP) (Fragments)
          Length = 265

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 237 GPLENLADHLADPVNNN 253



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>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor|
           (LHCII type I CAB-M9) (LHCP)
          Length = 265

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 237 GPLENLADHLADPVNNN 253



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>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor|
           (LHCII type I CAB-21) (LHCP)
          Length = 265

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 237 GPLENLADHLADPVNNN 253



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>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 237 GPLENLADHLADPVNNN 253



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>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor|
           (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 239 GPLENLADHLADPVNNN 255



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>CB2D_LYCES (P10707) Chlorophyll a-b binding protein 1D (LHCII type I CAB-1D)|
           (LHCP) (Fragment)
          Length = 116

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 88  GPLENLADHLADPVNNN 104



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>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 239 GPLENLADHLADPVNNN 255



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>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP  NL+DHL+DPVNNN
Sbjct: 239 GPLDNLVDHLADPVNNN 255



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>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor|
           (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 239 GPLENLADHLADPVNNN 255



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>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor|
           (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 239 GPLENLADHLADPVNNN 255



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>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 239 GPLENLADHLADPVNNN 255



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>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 239 GPLENLADHLADPVNNN 255



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>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor|
           (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 239 GPLENLADHLADPVNNN 255



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>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 228 GPLENLADHLADPVNNN 244



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>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1|
           (Chlorophyll a-b binding protein of LHCII type I) (CAB)
           (LHCP) (Fragment)
          Length = 206

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 178 GPLENLADHLADPVNNN 194



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>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 239 GPIENLADHLADPVNNN 255



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>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I|
           CAB-AB96) (LHCP) (Major 15) (Fragment)
          Length = 228

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 200 GPLENLADHLADPVNNN 216



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>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 239 GPIENLADHLADPVNNN 255



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>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1B) (CAB) (LHCP)
          Length = 274

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 246 GPIENLADHLADPVNNN 262



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>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor|
           (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 238 GPLENLADHLADPVNNN 254



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>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 238 GPLENLADHLADPVNNN 254



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>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor|
           (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 238 GPLENLADHLADPVNNN 254



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>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 238 GPLENLADHLADPVNNN 254



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>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type I CAB-13) (LHCP)
          Length = 266

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 238 GPLENLADHLADPVNNN 254



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>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP) (Fragment)
          Length = 255

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 227 GPLENLADHLADPVNNN 243



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>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
           (LHCII type I CAB-48) (LHCP)
          Length = 264

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 236 GPIENLADHLTDPVNNN 252



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>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 236 GPLENLADHLADPVNNN 252



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>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast|
           precursor (LHCII type I CAB-AB80) (LHCP)
          Length = 269

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 241 GPLENLADHLADPVNNN 257



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>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 264

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 236 GPLENLADHLADPVNNN 252



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>CB21_RAPSA (P14584) Chlorophyll a-b binding of LHCII type 1 protein|
           (Chlorophyll a-b binding of LHCII type I protein) (CAB)
           (LHCP) (Fragment)
          Length = 124

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPVNNN
Sbjct: 96  GPLENLADHLADPVNNN 112



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>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 265

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DH++DPVNNN
Sbjct: 237 GPLENLADHIADPVNNN 253



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>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor|
           (LHCII type I CAB-3B) (LHCP) (Fragments)
          Length = 267

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DH++DPVNNN
Sbjct: 239 GPLENLADHIADPVNNN 255



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>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor|
           (LHCII type I CAB-3A) (LHCP) (Fragments)
          Length = 267

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DH++DPVNNN
Sbjct: 239 GPLENLADHIADPVNNN 255



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>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DH++DPVNNN
Sbjct: 234 GPLENLADHIADPVNNN 250



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>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor|
           (LHCII type I CAB-22L) (LHCP)
          Length = 267

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL DPVNNN
Sbjct: 239 GPLENLADHLVDPVNNN 255



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>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 245

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL++PVNNN
Sbjct: 217 GPLENLADHLAEPVNNN 233



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>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCI type III CAB-4) (LHCP)
          Length = 251

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNNIL 170
           GPF+NLL HLSDP +N I+
Sbjct: 229 GPFENLLQHLSDPWHNTIV 247



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>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast|
           precursor (Light-harvesting complex II protein 5)
           (LHCB5) (LHCIIc)
          Length = 280

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNNILT 167
           GP +NL  HLSDP  NN+LT
Sbjct: 249 GPVENLAKHLSDPFGNNLLT 268



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>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor|
           (LHCII type II CAB-151) (LHCP)
          Length = 265

 Score = 32.0 bits (71), Expect = 0.44
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPV NN
Sbjct: 237 GPIENLFDHLADPVANN 253



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>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 266

 Score = 32.0 bits (71), Expect = 0.44
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP ++L DH++DPVNNN
Sbjct: 238 GPLEDLADHIADPVNNN 254



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>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor|
           (LHCII type I CAB-3) (LHCP)
          Length = 263

 Score = 32.0 bits (71), Expect = 0.44
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+ PVNNN
Sbjct: 235 GPLENLADHLAGPVNNN 251



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>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor|
           (LHCII type II CAB-215) (LHCP)
          Length = 265

 Score = 31.6 bits (70), Expect = 0.58
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP QNL DH++DPV NN
Sbjct: 237 GPIQNLYDHVADPVANN 253



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>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,|
           chloroplast precursor (CAB)
          Length = 268

 Score = 31.6 bits (70), Expect = 0.58
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL DPV NN
Sbjct: 240 GPLENLFDHLDDPVANN 256



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>CB22_PINSY (P15192) Chlorophyll a-b binding protein type 2 member 2|
           (Chlorophyll a-b binding protein type II 2) (CAB) (LHCP)
           (Fragment)
          Length = 150

 Score = 31.6 bits (70), Expect = 0.58
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPV NN
Sbjct: 122 GPIENLYDHLADPVANN 138



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>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast|
           precursor (CAB) (LHCP)
          Length = 266

 Score = 31.6 bits (70), Expect = 0.58
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPV NN
Sbjct: 238 GPIENLYDHLADPVANN 254



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>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type III CAB-13)
          Length = 265

 Score = 31.2 bits (69), Expect = 0.75
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NLLDHL +PV NN
Sbjct: 237 GPLENLLDHLDNPVANN 253



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>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor|
           (LHCII type I CAB-36) (LHCP)
          Length = 265

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DH++DPV NN
Sbjct: 237 GPIENLFDHVADPVANN 253



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>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 256

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP QNL DHL+DP  NN
Sbjct: 228 GPIQNLADHLADPGTNN 244



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>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 264

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DH++DPV NN
Sbjct: 236 GPIENLADHIADPVANN 252



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>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 269

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DPV NN
Sbjct: 240 GPLENLNDHLADPVANN 256



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>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 263

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DH++DPV NN
Sbjct: 235 GPIENLFDHVADPVANN 251



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>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor|
           (LHCII type I CAB-37) (LHCP)
          Length = 265

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DH++DPV NN
Sbjct: 237 GPIENLYDHVADPVANN 253



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>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor|
           (LHCII type I CAB-5) (LHCP) (Fragment)
          Length = 237

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DH++DPV NN
Sbjct: 209 GPIENLSDHIADPVANN 225



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>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCII type I CAB-4) (LHCP)
          Length = 265

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DH++DPV NN
Sbjct: 237 GPIENLSDHINDPVANN 253



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>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 226 GPFQNLLDHLSDP-VNNNILTSLKF 155
           GP QNL DHL+DP VN    ++ KF
Sbjct: 225 GPVQNLTDHLADPTVNKAFASATKF 249



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>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,|
           chloroplast precursor (DE Chlorophyll a-b binding
           protein type I F3) (CAB-F3) (LHCP)
          Length = 265

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL+DP  NN
Sbjct: 237 GPIENLSDHLADPAVNN 253



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>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor|
           (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa
           protein)
          Length = 246

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNNI 173
           GP +NL  HL+DP +NNI
Sbjct: 217 GPLENLATHLADPWHNNI 234



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>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 273

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 226 GPFQNLLDHLSDPVNNN 176
           GP +NL DHL++P  NN
Sbjct: 246 GPIENLTDHLANPAENN 262



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>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 226 GPFQNLLDHLSDP-VNNNILTSLKF 155
           GP QNL DHL++P VNN    + KF
Sbjct: 225 GPVQNLDDHLANPTVNNAFAFATKF 249


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,212,658
Number of Sequences: 219361
Number of extensions: 449971
Number of successful extensions: 1148
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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