Clone Name | rbah61e21 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_470523.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2733 Score = 119 bits (60), Expect = 1e-23 Identities = 157/188 (83%), Gaps = 1/188 (0%) Strand = Plus / Minus Query: 335 ctgaaagagatggtgtcatggcgaaatcaaactgaggcagcagcgctcccgccgcgacgg 394 |||| |||||||||||||||||||||||||| |||||||||| | | || || || | | Sbjct: 2632 ctgatagagatggtgtcatggcgaaatcaaattgaggcagcaacaccccggcggcaatag 2573 Query: 395 ggatggcaacctatgttatacgccaccgcccaggccaagttctggtgaactttcgccata 454 |||| || || ||||||||| || || |||||||| || || ||||||||||| |||||| Sbjct: 2572 ggatagctac-tatgttatatgcgacagcccaggctaaattttggtgaactttggccata 2514 Query: 455 gttgctttagagagggatagggcatctacaacctgagaaagtctgttccctagtagaact 514 |||||||| || || |||| ||||| | ||||||||||||||||| |||| |||||| Sbjct: 2513 gttgctttcgaaagtgataaagcatccattacctgagaaagtctgtttcctaatagaaca 2454 Query: 515 actgaagc 522 |||||||| Sbjct: 2453 actgaagc 2446
>gb|AY112319.1| Zea mays CL32822_1 mRNA sequence Length = 556 Score = 103 bits (52), Expect = 6e-19 Identities = 90/105 (85%) Strand = Plus / Minus Query: 259 ttctgaaacgatccatgcagctgcaggagtaaagaattgctgacnacaaagatggagctc 318 ||||||||||| |||||||||||||| || |||||||||||||| |||||||| ||||| Sbjct: 226 ttctgaaacgacccatgcagctgcagaagcaaagaattgctgacaacaaagattgagcta 167 Query: 319 agggccatcagtcctcctgaaagagatggtgtcatggcgaaatca 363 |||||||||| ||| |||||||||||||||| ||||||| Sbjct: 166 agggccatcaannnnnntgagagagatggtgtcatggggaaatca 122 Score = 71.9 bits (36), Expect = 2e-09 Identities = 68/79 (86%) Strand = Plus / Minus Query: 405 ctatgttatacgccaccgcccaggccaagttctggtgaactttcgccatagttgctttag 464 |||||||||| ||||| ||||||||||| || ||| ||||||| ||||| ||||| || | Sbjct: 81 ctatgttatatgccactgcccaggccaaattttggngaacttttgccatcgttgccttcg 22 Query: 465 agagggatagggcatctac 483 | |||||||| |||||||| Sbjct: 21 acagggatagcgcatctac 3
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 89.7 bits (45), Expect = 9e-15 Identities = 109/129 (84%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 334 cctgaaagagatggtgtcatggcgaaatcaaactgaggcagcagcgctcccgccgcgacg 393 ||||| |||||||||||||||||||||||||| |||||||||| | | || || || | Sbjct: 4102284 cctgatagagatggtgtcatggcgaaatcaaattgaggcagcaacaccccggcggcaata 4102343 Query: 394 gggatggcaacctatgttatacgccaccgcccaggccaagttctggtgaactttcgccat 453 ||||| || | |||||||||| || || |||||||| || || ||||||||||| ||||| Sbjct: 4102344 gggatagcta-ctatgttatatgcgacagcccaggctaaattttggtgaactttggccat 4102402 Query: 454 agttgcttt 462 ||||||||| Sbjct: 4102403 agttgcttt 4102411 Score = 75.8 bits (38), Expect = 1e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 260 tctgaaacgatccatgcagctgcaggagtaaagaattgctgacnacaaagatggagctca 319 ||||||| |||||||| || || || ||||||||||||||||| ||||| || ||||||| Sbjct: 4102089 tctgaaatgatccatgtagttgtagaagtaaagaattgctgacaacaaaaatcgagctca 4102148 Query: 320 gggccatca 328 ||||||||| Sbjct: 4102149 gggccatca 4102157 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 485 acctgagaaagtctgttccctagtagaactactgaagc 522 ||||||||||||||||| |||| |||||| |||||||| Sbjct: 4102518 acctgagaaagtctgtttcctaatagaacaactgaagc 4102555
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 89.7 bits (45), Expect = 9e-15 Identities = 109/129 (84%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 334 cctgaaagagatggtgtcatggcgaaatcaaactgaggcagcagcgctcccgccgcgacg 393 ||||| |||||||||||||||||||||||||| |||||||||| | | || || || | Sbjct: 4102393 cctgatagagatggtgtcatggcgaaatcaaattgaggcagcaacaccccggcggcaata 4102452 Query: 394 gggatggcaacctatgttatacgccaccgcccaggccaagttctggtgaactttcgccat 453 ||||| || | |||||||||| || || |||||||| || || ||||||||||| ||||| Sbjct: 4102453 gggatagcta-ctatgttatatgcgacagcccaggctaaattttggtgaactttggccat 4102511 Query: 454 agttgcttt 462 ||||||||| Sbjct: 4102512 agttgcttt 4102520 Score = 75.8 bits (38), Expect = 1e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 260 tctgaaacgatccatgcagctgcaggagtaaagaattgctgacnacaaagatggagctca 319 ||||||| |||||||| || || || ||||||||||||||||| ||||| || ||||||| Sbjct: 4102198 tctgaaatgatccatgtagttgtagaagtaaagaattgctgacaacaaaaatcgagctca 4102257 Query: 320 gggccatca 328 ||||||||| Sbjct: 4102258 gggccatca 4102266 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 485 acctgagaaagtctgttccctagtagaactactgaagc 522 ||||||||||||||||| |||| |||||| |||||||| Sbjct: 4102627 acctgagaaagtctgtttcctaatagaacaactgaagc 4102664
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 89.7 bits (45), Expect = 9e-15 Identities = 109/129 (84%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 334 cctgaaagagatggtgtcatggcgaaatcaaactgaggcagcagcgctcccgccgcgacg 393 ||||| |||||||||||||||||||||||||| |||||||||| | | || || || | Sbjct: 2921 cctgatagagatggtgtcatggcgaaatcaaattgaggcagcaacaccccggcggcaata 2980 Query: 394 gggatggcaacctatgttatacgccaccgcccaggccaagttctggtgaactttcgccat 453 ||||| || | |||||||||| || || |||||||| || || ||||||||||| ||||| Sbjct: 2981 gggatagcta-ctatgttatatgcgacagcccaggctaaattttggtgaactttggccat 3039 Query: 454 agttgcttt 462 ||||||||| Sbjct: 3040 agttgcttt 3048 Score = 75.8 bits (38), Expect = 1e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 260 tctgaaacgatccatgcagctgcaggagtaaagaattgctgacnacaaagatggagctca 319 ||||||| |||||||| || || || ||||||||||||||||| ||||| || ||||||| Sbjct: 2726 tctgaaatgatccatgtagttgtagaagtaaagaattgctgacaacaaaaatcgagctca 2785 Query: 320 gggccatca 328 ||||||||| Sbjct: 2786 gggccatca 2794 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 485 acctgagaaagtctgttccctagtagaactactgaagc 522 ||||||||||||||||| |||| |||||| |||||||| Sbjct: 3155 acctgagaaagtctgtttcctaatagaacaactgaagc 3192
>dbj|AP006090.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT26D17, TM0154, complete sequence Length = 85795 Score = 61.9 bits (31), Expect = 2e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 295 ttgctgacnacaaagatggagctcagggccatcagtcctcctgaaa 340 ||||| || ||||||||||||||||| ||||||| ||||||||||| Sbjct: 44372 ttgctaaccacaaagatggagctcagagccatcattcctcctgaaa 44327
>ref|NM_147876.3| Arabidopsis thaliana PAA2; ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transporter AT5G21930 (PAA2) transcript variant AT5G21930.1 mRNA, complete cds Length = 2825 Score = 50.1 bits (25), Expect = 0.007 Identities = 61/73 (83%) Strand = Plus / Minus Query: 304 acaaagatggagctcagggccatcagtcctcctgaaagagatggtgtcatggcgaaatca 363 |||||||| ||||||| ||||| ||||| || || | || |||||||||||||||||| Sbjct: 2591 acaaagatcgagctcaatgccattagtccaccagataacgaaggtgtcatggcgaaatca 2532 Query: 364 aactgaggcagca 376 ||||||| |||| Sbjct: 2531 tactgaggaagca 2519
>ref|NM_001036843.1| Arabidopsis thaliana PAA2; ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism AT5G21930 (PAA2) transcript variant AT5G21930.2 mRNA, complete cds Length = 3041 Score = 50.1 bits (25), Expect = 0.007 Identities = 61/73 (83%) Strand = Plus / Minus Query: 304 acaaagatggagctcagggccatcagtcctcctgaaagagatggtgtcatggcgaaatca 363 |||||||| ||||||| ||||| ||||| || || | || |||||||||||||||||| Sbjct: 2682 acaaagatcgagctcaatgccattagtccaccagataacgaaggtgtcatggcgaaatca 2623 Query: 364 aactgaggcagca 376 ||||||| |||| Sbjct: 2622 tactgaggaagca 2610
>gb|AY297817.1| Arabidopsis thaliana Paa2 P-type ATPase mRNA, complete cds; nuclear gene for chloroplast product Length = 2652 Score = 50.1 bits (25), Expect = 0.007 Identities = 61/73 (83%) Strand = Plus / Minus Query: 304 acaaagatggagctcagggccatcagtcctcctgaaagagatggtgtcatggcgaaatca 363 |||||||| ||||||| ||||| ||||| || || | || |||||||||||||||||| Sbjct: 2591 acaaagatcgagctcaatgccattagtccaccagataacgaaggtgtcatggcgaaatca 2532 Query: 364 aactgaggcagca 376 ||||||| |||| Sbjct: 2531 tactgaggaagca 2519
>dbj|AK119056.1| Arabidopsis thaliana At5g21930 mRNA for putative metal-transporting ATPase, complete cds, clone: RAFL21-39-K18 Length = 3021 Score = 50.1 bits (25), Expect = 0.007 Identities = 61/73 (83%) Strand = Plus / Minus Query: 304 acaaagatggagctcagggccatcagtcctcctgaaagagatggtgtcatggcgaaatca 363 |||||||| ||||||| ||||| ||||| || || | || |||||||||||||||||| Sbjct: 2823 acaaagatcgagctcaatgccattagtccaccagataacgaaggtgtcatggcgaaatca 2764 Query: 364 aactgaggcagca 376 ||||||| |||| Sbjct: 2763 tactgaggaagca 2751
>emb|AL589883.1|ATT6G21 Arabidopsis thaliana DNA chromosome 5, BAC clone T6G21 (ESSA project) Length = 149788 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 346 ggtgtcatggcgaaatcaaactgaggcagca 376 |||||||||||||||||| ||||||| |||| Sbjct: 16206 ggtgtcatggcgaaatcatactgaggaagca 16176
>gb|AC140977.1| Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete sequence Length = 112600 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 346 ggtgtcatggcgaaatcaaactgaggcagca 376 |||||||||||||||||| ||||||| |||| Sbjct: 26448 ggtgtcatggcgaaatcatactgaggaagca 26478
>ref|XM_383941.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03765.1) partial mRNA Length = 1365 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 356 cgaaatcaaactgaggcagcagcgc 380 ||||||||||| ||||||||||||| Sbjct: 1329 cgaaatcaaacagaggcagcagcgc 1353
>emb|BX004857.10| Zebrafish DNA sequence from clone CH211-217I17, complete sequence Length = 155624 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 agtcctcctgaaagagatggt 348 ||||||||||||||||||||| Sbjct: 103137 agtcctcctgaaagagatggt 103117
>gb|AC134523.5| Mus musculus BAC clone RP24-492M8 from 5, complete sequence Length = 178801 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 cttcagatcatcgggccctgg 248 ||||||||||||||||||||| Sbjct: 121953 cttcagatcatcgggccctgg 121933
>emb|AL953853.8| Mouse DNA sequence from clone RP23-6M16 on chromosome 2, complete sequence Length = 195971 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 gcaggagtaaagaattgctga 301 ||||||||||||||||||||| Sbjct: 129391 gcaggagtaaagaattgctga 129411
>gb|AC164292.4| Mus musculus BAC clone RP24-177C20 from chromosome 3, complete sequence Length = 185822 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 490 agaaagtctgttccctagta 509 |||||||||||||||||||| Sbjct: 113084 agaaagtctgttccctagta 113065
>gb|AC147367.3| Mus musculus BAC clone RP24-424M5 from chromosome 18, complete sequence Length = 175316 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cttctgaaacgatccatgca 277 |||||||||||||||||||| Sbjct: 149573 cttctgaaacgatccatgca 149554
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 gcagcagcgctcccgccgcg 390 |||||||||||||||||||| Sbjct: 754191 gcagcagcgctcccgccgcg 754210
>gb|AC133186.4| Mus musculus BAC clone RP23-320D8 from chromosome 18, complete sequence Length = 209380 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 cttctgaaacgatccatgca 277 |||||||||||||||||||| Sbjct: 102974 cttctgaaacgatccatgca 102993
>gb|AC144939.4| Mus musculus BAC clone RP24-137O21 from chromosome 8, complete sequence Length = 189547 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 agttgctttagagagggata 473 |||||||||||||||||||| Sbjct: 140138 agttgctttagagagggata 140157
>emb|AL929073.19| Mouse DNA sequence from clone RP23-125D6 on chromosome 4, complete sequence Length = 129246 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 agatcatcgggccctggtctctcc 255 ||||||| |||||||||||||||| Sbjct: 49350 agatcatggggccctggtctctcc 49373
>gb|AC118005.9| Mus musculus chromosome 19, clone RP23-318J14, complete sequence Length = 195212 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 tctgttccctagtagaacta 515 |||||||||||||||||||| Sbjct: 81574 tctgttccctagtagaacta 81555 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,374,350 Number of Sequences: 3902068 Number of extensions: 3374350 Number of successful extensions: 57025 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56924 Number of HSP's gapped (non-prelim): 101 length of query: 527 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 504 effective length of database: 17,143,297,704 effective search space: 8640222042816 effective search space used: 8640222042816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)