ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61e21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470523.1| Oryza sativa (japonica cultivar-group), predic... 119 1e-23
2gb|AY112319.1| Zea mays CL32822_1 mRNA sequence 103 6e-19
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 90 9e-15
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 90 9e-15
5gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome... 90 9e-15
6dbj|AP006090.1| Lotus japonicus genomic DNA, chromosome 1, clone... 62 2e-06
7ref|NM_147876.3| Arabidopsis thaliana PAA2; ATPase, coupled to t... 50 0.007
8ref|NM_001036843.1| Arabidopsis thaliana PAA2; ATPase, coupled t... 50 0.007
9gb|AY297817.1| Arabidopsis thaliana Paa2 P-type ATPase mRNA, com... 50 0.007
10dbj|AK119056.1| Arabidopsis thaliana At5g21930 mRNA for putative... 50 0.007
11emb|AL589883.1|ATT6G21 Arabidopsis thaliana DNA chromosome 5, BA... 46 0.12
12gb|AC140977.1| Arabidopsis thaliana chromosome 5 BAC F13M11 geno... 46 0.12
13ref|XM_383941.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 42 1.8
14emb|BX004857.10| Zebrafish DNA sequence from clone CH211-217I17,... 42 1.8
15gb|AC134523.5| Mus musculus BAC clone RP24-492M8 from 5, complet... 42 1.8
16emb|AL953853.8| Mouse DNA sequence from clone RP23-6M16 on chrom... 42 1.8
17gb|AC164292.4| Mus musculus BAC clone RP24-177C20 from chromosom... 40 7.1
18gb|AC147367.3| Mus musculus BAC clone RP24-424M5 from chromosome... 40 7.1
19gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 7.1
20gb|AC133186.4| Mus musculus BAC clone RP23-320D8 from chromosome... 40 7.1
21gb|AC144939.4| Mus musculus BAC clone RP24-137O21 from chromosom... 40 7.1
22emb|AL929073.19| Mouse DNA sequence from clone RP23-125D6 on chr... 40 7.1
23gb|AC118005.9| Mus musculus chromosome 19, clone RP23-318J14, co... 40 7.1 
>ref|XM_470523.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2733

 Score =  119 bits (60), Expect = 1e-23
 Identities = 157/188 (83%), Gaps = 1/188 (0%)
 Strand = Plus / Minus

                                                                        
Query: 335  ctgaaagagatggtgtcatggcgaaatcaaactgaggcagcagcgctcccgccgcgacgg 394
            |||| |||||||||||||||||||||||||| |||||||||| | | || || || |  |
Sbjct: 2632 ctgatagagatggtgtcatggcgaaatcaaattgaggcagcaacaccccggcggcaatag 2573

                                                                        
Query: 395  ggatggcaacctatgttatacgccaccgcccaggccaagttctggtgaactttcgccata 454
            |||| || || ||||||||| || || |||||||| || || ||||||||||| ||||||
Sbjct: 2572 ggatagctac-tatgttatatgcgacagcccaggctaaattttggtgaactttggccata 2514

                                                                        
Query: 455  gttgctttagagagggatagggcatctacaacctgagaaagtctgttccctagtagaact 514
            |||||||| || || ||||  ||||| |  ||||||||||||||||| |||| |||||| 
Sbjct: 2513 gttgctttcgaaagtgataaagcatccattacctgagaaagtctgtttcctaatagaaca 2454

                    
Query: 515  actgaagc 522
            ||||||||
Sbjct: 2453 actgaagc 2446
to top
>gb|AY112319.1| Zea mays CL32822_1 mRNA sequence
          Length = 556

 Score =  103 bits (52), Expect = 6e-19
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                       
Query: 259 ttctgaaacgatccatgcagctgcaggagtaaagaattgctgacnacaaagatggagctc 318
           ||||||||||| |||||||||||||| || |||||||||||||| |||||||| ||||| 
Sbjct: 226 ttctgaaacgacccatgcagctgcagaagcaaagaattgctgacaacaaagattgagcta 167

                                                        
Query: 319 agggccatcagtcctcctgaaagagatggtgtcatggcgaaatca 363
           ||||||||||       ||| |||||||||||||||| |||||||
Sbjct: 166 agggccatcaannnnnntgagagagatggtgtcatggggaaatca 122



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                       
Query: 405 ctatgttatacgccaccgcccaggccaagttctggtgaactttcgccatagttgctttag 464
           |||||||||| ||||| ||||||||||| || ||| ||||||| ||||| ||||| || |
Sbjct: 81  ctatgttatatgccactgcccaggccaaattttggngaacttttgccatcgttgccttcg 22

                              
Query: 465 agagggatagggcatctac 483
           | |||||||| ||||||||
Sbjct: 21  acagggatagcgcatctac 3
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 109/129 (84%), Gaps = 1/129 (0%)
 Strand = Plus / Plus

                                                                           
Query: 334     cctgaaagagatggtgtcatggcgaaatcaaactgaggcagcagcgctcccgccgcgacg 393
               ||||| |||||||||||||||||||||||||| |||||||||| | | || || || |  
Sbjct: 4102284 cctgatagagatggtgtcatggcgaaatcaaattgaggcagcaacaccccggcggcaata 4102343

                                                                           
Query: 394     gggatggcaacctatgttatacgccaccgcccaggccaagttctggtgaactttcgccat 453
               ||||| || | |||||||||| || || |||||||| || || ||||||||||| |||||
Sbjct: 4102344 gggatagcta-ctatgttatatgcgacagcccaggctaaattttggtgaactttggccat 4102402

                        
Query: 454     agttgcttt 462
               |||||||||
Sbjct: 4102403 agttgcttt 4102411



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                           
Query: 260     tctgaaacgatccatgcagctgcaggagtaaagaattgctgacnacaaagatggagctca 319
               ||||||| |||||||| || || || ||||||||||||||||| ||||| || |||||||
Sbjct: 4102089 tctgaaatgatccatgtagttgtagaagtaaagaattgctgacaacaaaaatcgagctca 4102148

                        
Query: 320     gggccatca 328
               |||||||||
Sbjct: 4102149 gggccatca 4102157



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                     
Query: 485     acctgagaaagtctgttccctagtagaactactgaagc 522
               ||||||||||||||||| |||| |||||| ||||||||
Sbjct: 4102518 acctgagaaagtctgtttcctaatagaacaactgaagc 4102555
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 109/129 (84%), Gaps = 1/129 (0%)
 Strand = Plus / Plus

                                                                           
Query: 334     cctgaaagagatggtgtcatggcgaaatcaaactgaggcagcagcgctcccgccgcgacg 393
               ||||| |||||||||||||||||||||||||| |||||||||| | | || || || |  
Sbjct: 4102393 cctgatagagatggtgtcatggcgaaatcaaattgaggcagcaacaccccggcggcaata 4102452

                                                                           
Query: 394     gggatggcaacctatgttatacgccaccgcccaggccaagttctggtgaactttcgccat 453
               ||||| || | |||||||||| || || |||||||| || || ||||||||||| |||||
Sbjct: 4102453 gggatagcta-ctatgttatatgcgacagcccaggctaaattttggtgaactttggccat 4102511

                        
Query: 454     agttgcttt 462
               |||||||||
Sbjct: 4102512 agttgcttt 4102520



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                           
Query: 260     tctgaaacgatccatgcagctgcaggagtaaagaattgctgacnacaaagatggagctca 319
               ||||||| |||||||| || || || ||||||||||||||||| ||||| || |||||||
Sbjct: 4102198 tctgaaatgatccatgtagttgtagaagtaaagaattgctgacaacaaaaatcgagctca 4102257

                        
Query: 320     gggccatca 328
               |||||||||
Sbjct: 4102258 gggccatca 4102266



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                     
Query: 485     acctgagaaagtctgttccctagtagaactactgaagc 522
               ||||||||||||||||| |||| |||||| ||||||||
Sbjct: 4102627 acctgagaaagtctgtttcctaatagaacaactgaagc 4102664
to top
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0050H14, complete sequence
          Length = 142245

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 109/129 (84%), Gaps = 1/129 (0%)
 Strand = Plus / Plus

                                                                        
Query: 334  cctgaaagagatggtgtcatggcgaaatcaaactgaggcagcagcgctcccgccgcgacg 393
            ||||| |||||||||||||||||||||||||| |||||||||| | | || || || |  
Sbjct: 2921 cctgatagagatggtgtcatggcgaaatcaaattgaggcagcaacaccccggcggcaata 2980

                                                                        
Query: 394  gggatggcaacctatgttatacgccaccgcccaggccaagttctggtgaactttcgccat 453
            ||||| || | |||||||||| || || |||||||| || || ||||||||||| |||||
Sbjct: 2981 gggatagcta-ctatgttatatgcgacagcccaggctaaattttggtgaactttggccat 3039

                     
Query: 454  agttgcttt 462
            |||||||||
Sbjct: 3040 agttgcttt 3048



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                        
Query: 260  tctgaaacgatccatgcagctgcaggagtaaagaattgctgacnacaaagatggagctca 319
            ||||||| |||||||| || || || ||||||||||||||||| ||||| || |||||||
Sbjct: 2726 tctgaaatgatccatgtagttgtagaagtaaagaattgctgacaacaaaaatcgagctca 2785

                     
Query: 320  gggccatca 328
            |||||||||
Sbjct: 2786 gggccatca 2794



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 485  acctgagaaagtctgttccctagtagaactactgaagc 522
            ||||||||||||||||| |||| |||||| ||||||||
Sbjct: 3155 acctgagaaagtctgtttcctaatagaacaactgaagc 3192
to top
>dbj|AP006090.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT26D17, TM0154,
             complete sequence
          Length = 85795

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                           
Query: 295   ttgctgacnacaaagatggagctcagggccatcagtcctcctgaaa 340
             ||||| || ||||||||||||||||| ||||||| |||||||||||
Sbjct: 44372 ttgctaaccacaaagatggagctcagagccatcattcctcctgaaa 44327
to top
>ref|NM_147876.3| Arabidopsis thaliana PAA2; ATPase, coupled to transmembrane movement
            of ions, phosphorylative mechanism / copper ion
            transporter AT5G21930 (PAA2) transcript variant
            AT5G21930.1 mRNA, complete cds
          Length = 2825

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                        
Query: 304  acaaagatggagctcagggccatcagtcctcctgaaagagatggtgtcatggcgaaatca 363
            |||||||| |||||||  ||||| ||||| || || |  || ||||||||||||||||||
Sbjct: 2591 acaaagatcgagctcaatgccattagtccaccagataacgaaggtgtcatggcgaaatca 2532

                         
Query: 364  aactgaggcagca 376
             ||||||| ||||
Sbjct: 2531 tactgaggaagca 2519
to top
>ref|NM_001036843.1| Arabidopsis thaliana PAA2; ATPase, coupled to transmembrane movement
            of ions, phosphorylative mechanism AT5G21930 (PAA2)
            transcript variant AT5G21930.2 mRNA, complete cds
          Length = 3041

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                        
Query: 304  acaaagatggagctcagggccatcagtcctcctgaaagagatggtgtcatggcgaaatca 363
            |||||||| |||||||  ||||| ||||| || || |  || ||||||||||||||||||
Sbjct: 2682 acaaagatcgagctcaatgccattagtccaccagataacgaaggtgtcatggcgaaatca 2623

                         
Query: 364  aactgaggcagca 376
             ||||||| ||||
Sbjct: 2622 tactgaggaagca 2610
to top
>gb|AY297817.1| Arabidopsis thaliana Paa2 P-type ATPase mRNA, complete cds; nuclear
            gene for chloroplast product
          Length = 2652

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                        
Query: 304  acaaagatggagctcagggccatcagtcctcctgaaagagatggtgtcatggcgaaatca 363
            |||||||| |||||||  ||||| ||||| || || |  || ||||||||||||||||||
Sbjct: 2591 acaaagatcgagctcaatgccattagtccaccagataacgaaggtgtcatggcgaaatca 2532

                         
Query: 364  aactgaggcagca 376
             ||||||| ||||
Sbjct: 2531 tactgaggaagca 2519
to top
>dbj|AK119056.1| Arabidopsis thaliana At5g21930 mRNA for putative metal-transporting
            ATPase, complete cds, clone: RAFL21-39-K18
          Length = 3021

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                        
Query: 304  acaaagatggagctcagggccatcagtcctcctgaaagagatggtgtcatggcgaaatca 363
            |||||||| |||||||  ||||| ||||| || || |  || ||||||||||||||||||
Sbjct: 2823 acaaagatcgagctcaatgccattagtccaccagataacgaaggtgtcatggcgaaatca 2764

                         
Query: 364  aactgaggcagca 376
             ||||||| ||||
Sbjct: 2763 tactgaggaagca 2751
to top
>emb|AL589883.1|ATT6G21 Arabidopsis thaliana DNA chromosome 5, BAC clone T6G21 (ESSA project)
          Length = 149788

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 346   ggtgtcatggcgaaatcaaactgaggcagca 376
             |||||||||||||||||| ||||||| ||||
Sbjct: 16206 ggtgtcatggcgaaatcatactgaggaagca 16176
to top
>gb|AC140977.1| Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete
             sequence
          Length = 112600

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 346   ggtgtcatggcgaaatcaaactgaggcagca 376
             |||||||||||||||||| ||||||| ||||
Sbjct: 26448 ggtgtcatggcgaaatcatactgaggaagca 26478
to top
>ref|XM_383941.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03765.1)
            partial mRNA
          Length = 1365

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 356  cgaaatcaaactgaggcagcagcgc 380
            ||||||||||| |||||||||||||
Sbjct: 1329 cgaaatcaaacagaggcagcagcgc 1353
to top
>emb|BX004857.10| Zebrafish DNA sequence from clone CH211-217I17, complete sequence
          Length = 155624

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 328    agtcctcctgaaagagatggt 348
              |||||||||||||||||||||
Sbjct: 103137 agtcctcctgaaagagatggt 103117
to top
>gb|AC134523.5| Mus musculus BAC clone RP24-492M8 from 5, complete sequence
          Length = 178801

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 228    cttcagatcatcgggccctgg 248
              |||||||||||||||||||||
Sbjct: 121953 cttcagatcatcgggccctgg 121933
to top
>emb|AL953853.8| Mouse DNA sequence from clone RP23-6M16 on chromosome 2, complete
              sequence
          Length = 195971

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 281    gcaggagtaaagaattgctga 301
              |||||||||||||||||||||
Sbjct: 129391 gcaggagtaaagaattgctga 129411
to top
>gb|AC164292.4| Mus musculus BAC clone RP24-177C20 from chromosome 3, complete sequence
          Length = 185822

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 490    agaaagtctgttccctagta 509
              ||||||||||||||||||||
Sbjct: 113084 agaaagtctgttccctagta 113065
to top
>gb|AC147367.3| Mus musculus BAC clone RP24-424M5 from chromosome 18, complete sequence
          Length = 175316

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    cttctgaaacgatccatgca 277
              ||||||||||||||||||||
Sbjct: 149573 cttctgaaacgatccatgca 149554
to top
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 371    gcagcagcgctcccgccgcg 390
              ||||||||||||||||||||
Sbjct: 754191 gcagcagcgctcccgccgcg 754210
to top
>gb|AC133186.4| Mus musculus BAC clone RP23-320D8 from chromosome 18, complete sequence
          Length = 209380

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    cttctgaaacgatccatgca 277
              ||||||||||||||||||||
Sbjct: 102974 cttctgaaacgatccatgca 102993
to top
>gb|AC144939.4| Mus musculus BAC clone RP24-137O21 from chromosome 8, complete sequence
          Length = 189547

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 454    agttgctttagagagggata 473
              ||||||||||||||||||||
Sbjct: 140138 agttgctttagagagggata 140157
to top
>emb|AL929073.19| Mouse DNA sequence from clone RP23-125D6 on chromosome 4, complete
             sequence
          Length = 129246

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 232   agatcatcgggccctggtctctcc 255
             ||||||| ||||||||||||||||
Sbjct: 49350 agatcatggggccctggtctctcc 49373
to top
>gb|AC118005.9| Mus musculus chromosome 19, clone RP23-318J14, complete sequence
          Length = 195212

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 496   tctgttccctagtagaacta 515
             ||||||||||||||||||||
Sbjct: 81574 tctgttccctagtagaacta 81555


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,374,350
Number of Sequences: 3902068
Number of extensions: 3374350
Number of successful extensions: 57025
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56924
Number of HSP's gapped (non-prelim): 101
length of query: 527
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 504
effective length of database: 17,143,297,704
effective search space: 8640222042816
effective search space used: 8640222042816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top