Clone Name	rbah61e19
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	ref|NM_185137.1| Oryza sativa (japonica cultivar-group), mRNA	135	2e-28
2	gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3	135	2e-28
3	gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic ...	135	2e-28
4	dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...	135	2e-28
5	dbj|AK104830.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
6	dbj|AK067902.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
7	gb|AY111316.1| Zea mays CL12529_1 mRNA sequence	56	1e-04
8	ref|NM_111744.3| Arabidopsis thaliana DEX1 (DEFECTIVE IN EXINE F...	52	0.002
9	gb|AC009326.8|ATAC009326 Arabidopsis thaliana chromosome III P1 ...	52	0.002
10	gb|AF257187.1|AF257187 Arabidopsis thaliana defective in exine f...	52	0.002
11	gb|AF257186.1|AF257186 Arabidopsis thaliana defective in exine f...	52	0.002
12	gb|BT005785.1| Arabidopsis thaliana clone RAFL15-34-O06 (R50099)...	52	0.002
13	gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome	48	0.029
14	gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mit...	48	0.029
15	gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion...	48	0.029
16	gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion...	48	0.029
17	emb|AL353582.16| Human DNA sequence from clone CTD-2190D5 on chr...	48	0.029
18	emb|AL138751.18| Human DNA sequence from clone RP11-346E17 on ch...	48	0.029
19	gb|AC091956.3| Homo sapiens chromosome 5 clone RP11-430F16, comp...	48	0.029
20	gb|AC139497.3| Homo sapiens chromosome 5 clone RP11-855C21, comp...	48	0.029
21	emb|AL358434.16| Human DNA sequence from clone RP11-471P6 on chr...	46	0.12
22	emb|AL353680.8| Human DNA sequence from clone RP11-252M21 on chr...	42	1.8
23	emb|BX294153.1| Pirellula sp. strain 1 complete genome; segment ...	42	1.8
24	emb|AJ606944.1| Zea mays mRNA for cytokinin oxidase 3 (cko3 gene...	42	1.8
25	emb|AJ606943.1| Zea mays mRNA for cytokinin oxidase 3 (cko3 gene...	42	1.8
26	gb|AC114788.4| Homo sapiens BAC clone RP11-648F7 from 2, complet...	42	1.8
27	gb|AC009226.3| Homo sapiens BAC clone RP11-167C7 from 2, complet...	42	1.8
28	emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chr...	42	1.8
29	gb|AC166645.4| Mus musculus chromosome 1, clone RP24-355D12, com...	40	7.1
30	gb|AC103396.8| Mus musculus chromosome 1, clone RP24-142I5, comp...	40	7.1
31	gb|AF461899.1| Homo sapiens FP6628 mRNA, complete cds	40	7.1
32	gb|AC141112.7| Medicago truncatula clone mth2-15m12, complete se...	40	7.1
33	emb|AL591901.12| Human DNA sequence from clone RP11-400C4 on chr...	40	7.1
34	emb|AL359914.14| Human DNA sequence from clone RP11-637B23 on ch...	40	7.1
35	emb|AL390739.8| Human DNA sequence from clone RP11-157F14 on chr...	40	7.1
36	emb|AL353710.7| Human DNA sequence from clone RP11-470P4 on chro...	40	7.1
37	emb|AL096677.21|HSJ322G13 Human DNA sequence from clone RP3-322G...	40	7.1
38	emb|AL049641.11|HSDA22P16 Human DNA sequence from clone RP6-22P1...	40	7.1
39	emb|AL035665.32|HS644L1 Human DNA sequence from clone RP4-644L1 ...	40	7.1
40	emb|AL009181.1|HS212P9 Human DNA sequence from clone RP1-212P9 o...	40	7.1
41	gb|AC007998.10| Homo sapiens chromosome 18, clone RP11-322E11, c...	40	7.1
42	emb|AL109946.12|HSJ820B18 Human DNA sequence from clone RP5-820B...	40	7.1
43	gb|AC124892.8| Homo sapiens 12 BAC RP11-574B6 (Roswell Park Canc...	40	7.1
44	gb|AC120053.4| Homo sapiens chromosome 8, clone CTD-2006H14, com...	40	7.1
45	gb|AC010834.19| Homo sapiens chromosome 8, clone RP11-10N23, com...	40	7.1
46	emb|BX511134.8| Zebrafish DNA sequence from clone CH211-134C9 in...	40	7.1
47	gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g...	40	7.1
48	dbj|AK019271.1| Mus musculus 10, 11 days embryo whole body cDNA,...	40	7.1
49	ref|NM_069123.1| Caenorhabditis elegans T28C6.3 (T28C6.3) mRNA, ...	40	7.1
50	gb|AC095046.3| Homo sapiens BAC clone RP11-147K21 from 4, comple...	40	7.1
51	gb|AC008281.3| Homo sapiens BAC clone RP11-481E6 from 2, complet...	40	7.1
52	gb|AC004826.3|AC004826 Homo sapiens PAC clone RP1-309D19 from 5,...	40	7.1
53	gb|AC010087.3| Homo sapiens BAC clone RP11-241M13 from 2, comple...	40	7.1
54	gb|AC113382.2| Homo sapiens chromosome 5 clone RP11-325L7, compl...	40	7.1
55	gb|AF245226.1|AF245226 Homo sapiens chromosome 21 map 21q21 clon...	40	7.1
56	gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1)...	40	7.1
57	emb|Z54238.1|CET28C6 Caenorhabditis elegans Cosmid T28C6, comple...	40	7.1
58	dbj|AP001674.1| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	7.1
59	dbj|AP000486.6| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	7.1
60	gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malay...	40	7.1
61	dbj|AP003467.2| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	7.1
62	emb|AL157359.1|HSP19646 Homo sapiens chromosome 21 sequence from...	40	7.1
63	emb|CT571261.1| Medicago truncatula chromosome 5 clone mth2-67l4...	40	7.1
64	emb|AL669959.22| Mouse DNA sequence from clone RP23-221H6 on chr...	40	7.1
65	dbj|AP003551.2| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	7.1

---

>ref|NM_185137.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2834

 Score =  135 bits (68), Expect = 2e-28
 Identities = 182/220 (82%)
 Strand = Plus / Minus

                                                                        
Query: 295  gaaaacgatggcaacggtgcaccttcttggggccgtaggatgacgaggacaaggaacatc 354
            ||||| ||||||||||| || |||||||| ||||| |||||||| || ||    ||||||
Sbjct: 2540 gaaaatgatggcaacggagcgccttcttgtggccgcaggatgacaagaacgctaaacatc 2481

                                                                        
Query: 355  ccaagcatcggcagaaccacgagccatttcagcagcttgaagtagtgcacgtggaaggtg 414
            |||||||| || |||| ||||||||||||||| |||||| | || |||| ||||||||||
Sbjct: 2480 ccaagcattggaagaagcacgagccatttcagaagcttgtaataatgcatgtggaaggtg 2421

                                                                        
Query: 415  agtgagtactcgtcggcgaaatgcagcccgtgtttgtccaccatctccacgagcacggtt 474
            || ||| ||||||| | ||| |  | ||||| |||||| ||||| ||||| ||||| |||
Sbjct: 2420 agcgagaactcgtcagagaagtagaacccgtttttgtcaaccatttccacaagcacagtt 2361

                                                    
Query: 475  cctgtggttctgactggcacagtggggagctgcatccgct 514
            ||||||||||| || || || ||||| |||| ||||||||
Sbjct: 2360 cctgtggttctcacaggaactgtgggaagcttcatccgct 2321

---

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  135 bits (68), Expect = 2e-28
 Identities = 182/220 (82%)
 Strand = Plus / Minus

                                                                            
Query: 295      gaaaacgatggcaacggtgcaccttcttggggccgtaggatgacgaggacaaggaacatc 354
                ||||| ||||||||||| || |||||||| ||||| |||||||| || ||    ||||||
Sbjct: 34383674 gaaaatgatggcaacggagcgccttcttgtggccgcaggatgacaagaacgctaaacatc 34383615

                                                                            
Query: 355      ccaagcatcggcagaaccacgagccatttcagcagcttgaagtagtgcacgtggaaggtg 414
                |||||||| || |||| ||||||||||||||| |||||| | || |||| ||||||||||
Sbjct: 34383614 ccaagcattggaagaagcacgagccatttcagaagcttgtaataatgcatgtggaaggtg 34383555

                                                                            
Query: 415      agtgagtactcgtcggcgaaatgcagcccgtgtttgtccaccatctccacgagcacggtt 474
                || ||| ||||||| | ||| |  | ||||| |||||| ||||| ||||| ||||| |||
Sbjct: 34383554 agcgagaactcgtcagagaagtagaacccgtttttgtcaaccatttccacaagcacagtt 34383495

                                                        
Query: 475      cctgtggttctgactggcacagtggggagctgcatccgct 514
                ||||||||||| || || || ||||| |||| ||||||||
Sbjct: 34383494 cctgtggttctcacaggaactgtgggaagcttcatccgct 34383455

---

>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete
             sequence
          Length = 115393

 Score =  135 bits (68), Expect = 2e-28
 Identities = 182/220 (82%)
 Strand = Plus / Plus

                                                                         
Query: 295   gaaaacgatggcaacggtgcaccttcttggggccgtaggatgacgaggacaaggaacatc 354
             ||||| ||||||||||| || |||||||| ||||| |||||||| || ||    ||||||
Sbjct: 66020 gaaaatgatggcaacggagcgccttcttgtggccgcaggatgacaagaacgctaaacatc 66079

                                                                         
Query: 355   ccaagcatcggcagaaccacgagccatttcagcagcttgaagtagtgcacgtggaaggtg 414
             |||||||| || |||| ||||||||||||||| |||||| | || |||| ||||||||||
Sbjct: 66080 ccaagcattggaagaagcacgagccatttcagaagcttgtaataatgcatgtggaaggtg 66139

                                                                         
Query: 415   agtgagtactcgtcggcgaaatgcagcccgtgtttgtccaccatctccacgagcacggtt 474
             || ||| ||||||| | ||| |  | ||||| |||||| ||||| ||||| ||||| |||
Sbjct: 66140 agcgagaactcgtcagagaagtagaacccgtttttgtcaaccatttccacaagcacagtt 66199

                                                     
Query: 475   cctgtggttctgactggcacagtggggagctgcatccgct 514
             ||||||||||| || || || ||||| |||| ||||||||
Sbjct: 66200 cctgtggttctcacaggaactgtgggaagcttcatccgct 66239

---

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  135 bits (68), Expect = 2e-28
 Identities = 182/220 (82%)
 Strand = Plus / Minus

                                                                            
Query: 295      gaaaacgatggcaacggtgcaccttcttggggccgtaggatgacgaggacaaggaacatc 354
                ||||| ||||||||||| || |||||||| ||||| |||||||| || ||    ||||||
Sbjct: 34474146 gaaaatgatggcaacggagcgccttcttgtggccgcaggatgacaagaacgctaaacatc 34474087

                                                                            
Query: 355      ccaagcatcggcagaaccacgagccatttcagcagcttgaagtagtgcacgtggaaggtg 414
                |||||||| || |||| ||||||||||||||| |||||| | || |||| ||||||||||
Sbjct: 34474086 ccaagcattggaagaagcacgagccatttcagaagcttgtaataatgcatgtggaaggtg 34474027

                                                                            
Query: 415      agtgagtactcgtcggcgaaatgcagcccgtgtttgtccaccatctccacgagcacggtt 474
                || ||| ||||||| | ||| |  | ||||| |||||| ||||| ||||| ||||| |||
Sbjct: 34474026 agcgagaactcgtcagagaagtagaacccgtttttgtcaaccatttccacaagcacagtt 34473967

                                                        
Query: 475      cctgtggttctgactggcacagtggggagctgcatccgct 514
                ||||||||||| || || || ||||| |||| ||||||||
Sbjct: 34473966 cctgtggttctcacaggaactgtgggaagcttcatccgct 34473927

---

>dbj|AK104830.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A01, full
           insert sequence
          Length = 880

 Score =  135 bits (68), Expect = 2e-28
 Identities = 182/220 (82%)
 Strand = Plus / Minus

                                                                       
Query: 295 gaaaacgatggcaacggtgcaccttcttggggccgtaggatgacgaggacaaggaacatc 354
           ||||| ||||||||||| || |||||||| ||||| |||||||| || ||    ||||||
Sbjct: 563 gaaaatgatggcaacggagcgccttcttgtggccgcaggatgacaagaacgctaaacatc 504

                                                                       
Query: 355 ccaagcatcggcagaaccacgagccatttcagcagcttgaagtagtgcacgtggaaggtg 414
           |||||||| || |||| ||||||||||||||| |||||| | || |||| ||||||||||
Sbjct: 503 ccaagcattggaagaagcacgagccatttcagaagcttgtaataatgcatgtggaaggtg 444

                                                                       
Query: 415 agtgagtactcgtcggcgaaatgcagcccgtgtttgtccaccatctccacgagcacggtt 474
           || ||| ||||||| | ||| |  | ||||| |||||| ||||| ||||| ||||| |||
Sbjct: 443 agcgagaactcgtcagagaagtagaacccgtttttgtcaaccatttccacaagcacagtt 384

                                                   
Query: 475 cctgtggttctgactggcacagtggggagctgcatccgct 514
           ||||||||||| || || || ||||| |||| ||||||||
Sbjct: 383 cctgtggttctcacaggaactgtgggaagcttcatccgct 344

---

>dbj|AK067902.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121O19, full
            insert sequence
          Length = 3031

 Score =  135 bits (68), Expect = 2e-28
 Identities = 182/220 (82%)
 Strand = Plus / Minus

                                                                        
Query: 295  gaaaacgatggcaacggtgcaccttcttggggccgtaggatgacgaggacaaggaacatc 354
            ||||| ||||||||||| || |||||||| ||||| |||||||| || ||    ||||||
Sbjct: 2687 gaaaatgatggcaacggagcgccttcttgtggccgcaggatgacaagaacgctaaacatc 2628

                                                                        
Query: 355  ccaagcatcggcagaaccacgagccatttcagcagcttgaagtagtgcacgtggaaggtg 414
            |||||||| || |||| ||||||||||||||| |||||| | || |||| ||||||||||
Sbjct: 2627 ccaagcattggaagaagcacgagccatttcagaagcttgtaataatgcatgtggaaggtg 2568

                                                                        
Query: 415  agtgagtactcgtcggcgaaatgcagcccgtgtttgtccaccatctccacgagcacggtt 474
            || ||| ||||||| | ||| |  | ||||| |||||| ||||| ||||| ||||| |||
Sbjct: 2567 agcgagaactcgtcagagaagtagaacccgtttttgtcaaccatttccacaagcacagtt 2508

                                                    
Query: 475  cctgtggttctgactggcacagtggggagctgcatccgct 514
            ||||||||||| || || || ||||| |||| ||||||||
Sbjct: 2507 cctgtggttctcacaggaactgtgggaagcttcatccgct 2468

---

>gb|AY111316.1| Zea mays CL12529_1 mRNA sequence
          Length = 1152

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 289 ttccgcgaaaacgatggcaacggtgcaccttcttggggcc 328
           ||||| ||||||||||||| ||| ||||||||||||||||
Sbjct: 369 ttccgtgaaaacgatggcagcggcgcaccttcttggggcc 408



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 395 agtagtgcacgtggaaggtgagtgagtactcgtcggcgaaatgcagccc 443
           |||| |||| |||||||||||||||| ||||||||| ||| | ||||||
Sbjct: 475 agtaatgcatgtggaaggtgagtgagaactcgtcggagaagtacagccc 523

---

>ref|NM_111744.3| Arabidopsis thaliana DEX1 (DEFECTIVE IN EXINE FORMATION 1) AT3G09090
            (DEX1) mRNA, complete cds
          Length = 3722

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Minus

                                                                        
Query: 317  cttcttggggccgtaggatgacgaggacaaggaacatcccaagcatcggcagaaccacga 376
            ||||||| |||||||| || ||||| | |  ||||||||| |||||||| ||||| |  |
Sbjct: 2902 cttcttgaggccgtagtatcacgagcagaccgaacatcccgagcatcgggagaacaagaa 2843

                                  
Query: 377  gccatttcagcagcttgaagta 398
            |||||||||| |||||| ||||
Sbjct: 2842 gccatttcagaagcttgtagta 2821

---

>gb|AC009326.8|ATAC009326 Arabidopsis thaliana chromosome III P1 MZB10 genomic sequence, complete
             sequence
          Length = 85561

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                         
Query: 317   cttcttggggccgtaggatgacgaggacaaggaacatcccaagcatcggcagaaccacga 376
             ||||||| |||||||| || ||||| | |  ||||||||| |||||||| ||||| |  |
Sbjct: 43859 cttcttgaggccgtagtatcacgagcagaccgaacatcccgagcatcgggagaacaagaa 43918

                                   
Query: 377   gccatttcagcagcttgaagta 398
             |||||||||| |||||| ||||
Sbjct: 43919 gccatttcagaagcttgtagta 43940

---

>gb|AF257187.1|AF257187 Arabidopsis thaliana defective in exine formation (DEX1) mRNA,
            complete cds
          Length = 3112

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Minus

                                                                        
Query: 317  cttcttggggccgtaggatgacgaggacaaggaacatcccaagcatcggcagaaccacga 376
            ||||||| |||||||| || ||||| | |  ||||||||| |||||||| ||||| |  |
Sbjct: 2902 cttcttgaggccgtagtatcacgagcagaccgaacatcccgagcatcgggagaacaagaa 2843

                                  
Query: 377  gccatttcagcagcttgaagta 398
            |||||||||| |||||| ||||
Sbjct: 2842 gccatttcagaagcttgtagta 2821

---

>gb|AF257186.1|AF257186 Arabidopsis thaliana defective in exine formation (DEX1) gene,
            complete cds
          Length = 7353

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Minus

                                                                        
Query: 317  cttcttggggccgtaggatgacgaggacaaggaacatcccaagcatcggcagaaccacga 376
            ||||||| |||||||| || ||||| | |  ||||||||| |||||||| ||||| |  |
Sbjct: 6581 cttcttgaggccgtagtatcacgagcagaccgaacatcccgagcatcgggagaacaagaa 6522

                                  
Query: 377  gccatttcagcagcttgaagta 398
            |||||||||| |||||| ||||
Sbjct: 6521 gccatttcagaagcttgtagta 6500

---

>gb|BT005785.1| Arabidopsis thaliana clone RAFL15-34-O06 (R50099) unknown protein
            (At3g09090) mRNA, partial cds
          Length = 2893

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Minus

                                                                        
Query: 317  cttcttggggccgtaggatgacgaggacaaggaacatcccaagcatcggcagaaccacga 376
            ||||||| |||||||| || ||||| | |  ||||||||| |||||||| ||||| |  |
Sbjct: 2637 cttcttgaggccgtagtatcacgagcagaccgaacatcccgagcatcgggagaacaagaa 2578

                                  
Query: 377  gccatttcagcagcttgaagta 398
            |||||||||| |||||| ||||
Sbjct: 2577 gccatttcagaagcttgtagta 2556

---

>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome
          Length = 569630

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 454    accatctccacgagcacggttcctgtggttct 485
              ||||||||||||||||| |||||||| |||||
Sbjct: 484539 accatctccacgagcacagttcctgtcgttct 484508

---

>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete
              genome
          Length = 701046

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                              
Query: 454    accatctccacgagcacggttcctgtggttct 485
              ||||||||||||||||| |||||||| |||||
Sbjct: 459447 accatctccacgagcacagttcctgtcgttct 459478

---

>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome
          Length = 569553

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 454    accatctccacgagcacggttcctgtggttct 485
              ||||||||||||||||| |||||||| |||||
Sbjct: 194047 accatctccacgagcacagttcctgtcgttct 194016

---

>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome
          Length = 535825

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 454    accatctccacgagcacggttcctgtggttct 485
              ||||||||||||||||| |||||||| |||||
Sbjct: 510572 accatctccacgagcacagttcctgtcgttct 510541

---

>emb|AL353582.16| Human DNA sequence from clone CTD-2190D5 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 115551

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 75    tcaaaactcaactgtatttctata 98
             ||||||||||||||||||||||||
Sbjct: 81214 tcaaaactcaactgtatttctata 81237

---

>emb|AL138751.18| Human DNA sequence from clone RP11-346E17 on chromosome 9 Contains the
             5' end of a novel gene (CGI-67), a novel gene, a novel
             gene (LOC138240) and a CpG island, complete sequence
          Length = 195844

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 76    caaaactcaactgtatttctatac 99
             ||||||||||||||||||||||||
Sbjct: 99133 caaaactcaactgtatttctatac 99110

---

>gb|AC091956.3| Homo sapiens chromosome 5 clone RP11-430F16, complete sequence
          Length = 209754

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 76    caaaactcaactgtatttctatac 99
             ||||||||||||||||||||||||
Sbjct: 72435 caaaactcaactgtatttctatac 72412

---

>gb|AC139497.3| Homo sapiens chromosome 5 clone RP11-855C21, complete sequence
          Length = 199004

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 76     caaaactcaactgtatttctatac 99
              ||||||||||||||||||||||||
Sbjct: 126557 caaaactcaactgtatttctatac 126580

---

>emb|AL358434.16| Human DNA sequence from clone RP11-471P6 on chromosome 1 Contains the 5'
              end of the XPR1 gene for xenotropic and polytropic
              retrovirus receptor, complete sequence
          Length = 178375

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 76     caaaactcaactgtatttctata 98
              |||||||||||||||||||||||
Sbjct: 153626 caaaactcaactgtatttctata 153604

---

>emb|AL353680.8| Human DNA sequence from clone RP11-252M21 on chromosome 13 Contains a
              novel FLJ31073 containing gene, six novel genes and a CpG
              island, complete sequence
          Length = 176930

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 480    ggttctgactggcacagtggg 500
              |||||||||||||||||||||
Sbjct: 146860 ggttctgactggcacagtggg 146840

---

>emb|BX294153.1| Pirellula sp. strain 1 complete genome; segment 21/24
          Length = 293350

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 374    cgagccatttcagcagcttga 394
              |||||||||||||||||||||
Sbjct: 112066 cgagccatttcagcagcttga 112046

---

>emb|AJ606944.1| Zea mays mRNA for cytokinin oxidase 3 (cko3 gene), clone 2
          Length = 2146

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 384 cagcagcttgaagtagtgcac 404
           |||||||||||||||||||||
Sbjct: 109 cagcagcttgaagtagtgcac 89

---

>emb|AJ606943.1| Zea mays mRNA for cytokinin oxidase 3 (cko3 gene), clone 1
          Length = 2134

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 384 cagcagcttgaagtagtgcac 404
           |||||||||||||||||||||
Sbjct: 116 cagcagcttgaagtagtgcac 96

---

>gb|AC114788.4| Homo sapiens BAC clone RP11-648F7 from 2, complete sequence
          Length = 116951

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 75    tcaaaactcaactgtatttctatac 99
             ||||||||||| |||||||||||||
Sbjct: 35876 tcaaaactcaattgtatttctatac 35852

---

>gb|AC009226.3| Homo sapiens BAC clone RP11-167C7 from 2, complete sequence
          Length = 138778

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 75    tcaaaactcaactgtatttctatac 99
             |||||| ||||||||||||||||||
Sbjct: 14323 tcaaaaatcaactgtatttctatac 14347

---

>emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chromosome 1, complete
             sequence
          Length = 217775

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 24    atgtcacatcaccagttagaa 44
             |||||||||||||||||||||
Sbjct: 29817 atgtcacatcaccagttagaa 29797

---

>gb|AC166645.4| Mus musculus chromosome 1, clone RP24-355D12, complete sequence
          Length = 169550

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   atacaggatttctcatctca 172
             ||||||||||||||||||||
Sbjct: 40079 atacaggatttctcatctca 40098

---

>gb|AC103396.8| Mus musculus chromosome 1, clone RP24-142I5, complete sequence
          Length = 183930

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    atacaggatttctcatctca 172
              ||||||||||||||||||||
Sbjct: 100806 atacaggatttctcatctca 100825

---

>gb|AF461899.1| Homo sapiens FP6628 mRNA, complete cds
          Length = 3102

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 76   caaaactcaactgtatttctatac 99
            ||||| ||||||||||||||||||
Sbjct: 1838 caaaaatcaactgtatttctatac 1861

---

>gb|AC141112.7| Medicago truncatula clone mth2-15m12, complete sequence
          Length = 135248

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    atttctatactgtaaaactatatc 113
             ||||||||| ||||||||||||||
Sbjct: 57869 atttctataatgtaaaactatatc 57892

---

>emb|AL591901.12| Human DNA sequence from clone RP11-400C4 on chromosome 1, complete
             sequence
          Length = 129844

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   tgtgcagaggccctgtcatg 228
             ||||||||||||||||||||
Sbjct: 81163 tgtgcagaggccctgtcatg 81182

---

>emb|AL359914.14| Human DNA sequence from clone RP11-637B23 on chromosome X Contains a H3
             histone, family 3B (H3F3B) pseudogene, the BMP15 gene for
             bone morphogenetic protein 15, and a high-mobility group
             box 1 (HMGB1) pseudogene, complete sequence
          Length = 125495

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    caaaactcaactgtatttctatac 99
             ||||||||||||| ||||||||||
Sbjct: 74522 caaaactcaactgaatttctatac 74545

---

>emb|AL390739.8| Human DNA sequence from clone RP11-157F14 on chromosome 13 Contains two
             CpG islands, complete sequence
          Length = 123887

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    tcaaaactcaactgtatttctata 98
             |||||| |||||||||||||||||
Sbjct: 50834 tcaaaagtcaactgtatttctata 50811

---

>emb|AL353710.7| Human DNA sequence from clone RP11-470P4 on chromosome 9 Contains a novel
              gene, the 5' end of the CHAC gene for chorea acanthocytosis
              and a CpG island, complete sequence
          Length = 110633

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 76     caaaactcaactgtatttctatac 99
              |||||||||| |||||||||||||
Sbjct: 109107 caaaactcaattgtatttctatac 109084

---

>emb|AL096677.21|HSJ322G13 Human DNA sequence from clone RP3-322G13 on chromosome 20p11.21-12.3
             Contains the gene for NTF2-related export protein (NXT1),
             the ZNF336 gene for zinc finger protein 336, two putative
             novel genes, the NAPB gene for N-ethylmaleimide-sensitive
             factor attachment protein beta, the CSTL1 gene for
             cystatin-like 1, the CST11 gene for cystatin 11 and six
             CpG islands, complete sequence
          Length = 112180

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    caaaactcaactgtatttctatac 99
             ||||| ||||||||||||||||||
Sbjct: 42775 caaaattcaactgtatttctatac 42798

---

>emb|AL049641.11|HSDA22P16 Human DNA sequence from clone RP6-22P16 on chromosome Xq11.1-13.1
             Contains a zinc finger protein 208 (ZNF208) pseudogene,
             complete sequence
          Length = 103367

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    caaaactcaactgtatttctatac 99
             |||||||||| |||||||||||||
Sbjct: 67212 caaaactcaattgtatttctatac 67235

---

>emb|AL035665.32|HS644L1 Human DNA sequence from clone RP4-644L1 on chromosome 20q12 Contains
             the MAFB gene for v-maf musculoaponeurotic fibrosarcoma
             oncogene homolog B (avian), a novel gene and two CpG
             islands, complete sequence
          Length = 145593

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    caaaactcaactgtatttctatac 99
             ||||| ||||||||||||||||||
Sbjct: 13232 caaaaatcaactgtatttctatac 13255

---

>emb|AL009181.1|HS212P9 Human DNA sequence from clone RP1-212P9 on chromosome 1p34.1-35
             Contains the OPRD1 gene for opioid receptor delta 1, two
             novel genes, the 5' end of the  EPB41 gene for erythrocyte
             membrane protein band 4.1 (elliptocytosis 1, RH-linked)
             and a CpG island, complete sequence
          Length = 148540

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 75    tcaaaactcaactgtatttctata 98
             |||||| |||||||||||||||||
Sbjct: 20058 tcaaaaatcaactgtatttctata 20081

---

>gb|AC007998.10| Homo sapiens chromosome 18, clone RP11-322E11, complete sequence
          Length = 207799

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 76    caaaactcaactgtatttctatac 99
             ||||| ||||||||||||||||||
Sbjct: 56889 caaaaatcaactgtatttctatac 56866

---

>emb|AL109946.12|HSJ820B18 Human DNA sequence from clone RP5-820B18 on chromosome Xq22.2-23
            Contains part of a novel gene for a protein similar to
            nuclear cap binding protein and the 5' end of the MID1
            gene for midline 1 (Opitz/BBB syndrome) protein, complete
            sequence
          Length = 94081

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 76   caaaactcaactgtatttctatac 99
            ||||| ||||||||||||||||||
Sbjct: 9071 caaaaatcaactgtatttctatac 9094

---

>gb|AC124892.8| Homo sapiens 12 BAC RP11-574B6 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 20925

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 61   caaaaaattcttcctcaaaa 80
            ||||||||||||||||||||
Sbjct: 8262 caaaaaattcttcctcaaaa 8243

---

>gb|AC120053.4| Homo sapiens chromosome 8, clone CTD-2006H14, complete sequence
          Length = 124497

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 76   caaaactcaactgtatttctatac 99
            ||||| ||||||||||||||||||
Sbjct: 5161 caaaaatcaactgtatttctatac 5184

---

>gb|AC010834.19| Homo sapiens chromosome 8, clone RP11-10N23, complete sequence
          Length = 175967

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 76    caaaactcaactgtatttctatac 99
             ||||| ||||||||||||||||||
Sbjct: 65642 caaaaatcaactgtatttctatac 65619

---

>emb|BX511134.8| Zebrafish DNA sequence from clone CH211-134C9 in linkage group 1,
             complete sequence
          Length = 188290

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    aaaaaattcttcctcaaaac 81
             ||||||||||||||||||||
Sbjct: 61397 aaaaaattcttcctcaaaac 61416

---

>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 381     tttcagcagcttgaagtagt 400
               ||||||||||||||||||||
Sbjct: 3752401 tttcagcagcttgaagtagt 3752382

---

>dbj|AK019271.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2810431G11 product:glutathione
           S-transferase, alpha 4, full insert sequence
          Length = 926

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 56  tgtgtcaaaaaattcttcctcaaa 79
           |||||||| |||||||||||||||
Sbjct: 205 tgtgtcaagaaattcttcctcaaa 182

---

>ref|NM_069123.1| Caenorhabditis elegans T28C6.3 (T28C6.3) mRNA, complete cds
          Length = 603

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 aggatgacgaggacaaggaa 350
           ||||||||||||||||||||
Sbjct: 380 aggatgacgaggacaaggaa 399

---

>gb|AC095046.3| Homo sapiens BAC clone RP11-147K21 from 4, complete sequence
          Length = 156786

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    gaggacaaggaacatcccaa 358
              ||||||||||||||||||||
Sbjct: 147010 gaggacaaggaacatcccaa 147029

---

>gb|AC008281.3| Homo sapiens BAC clone RP11-481E6 from 2, complete sequence
          Length = 131085

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    aaaactcaactgtatttcta 96
             ||||||||||||||||||||
Sbjct: 85055 aaaactcaactgtatttcta 85036

---

>gb|AC004826.3|AC004826 Homo sapiens PAC clone RP1-309D19 from 5, complete sequence
          Length = 149172

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    caaaactcaactgtatttctatac 99
             ||||| ||||||||||||||||||
Sbjct: 40483 caaaaatcaactgtatttctatac 40506

---

>gb|AC010087.3| Homo sapiens BAC clone RP11-241M13 from 2, complete sequence
          Length = 202029

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 76     caaaactcaactgtatttctatac 99
              ||||| ||||||||||||||||||
Sbjct: 131285 caaaaatcaactgtatttctatac 131308

---

>gb|AC113382.2| Homo sapiens chromosome 5 clone RP11-325L7, complete sequence
          Length = 166870

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 76    caaaactcaactgtatttctatac 99
             ||||| ||||||||||||||||||
Sbjct: 55239 caaaaatcaactgtatttctatac 55216

---

>gb|AF245226.1|AF245226 Homo sapiens chromosome 21 map 21q21 clone B845I12, complete sequence
          Length = 178237

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     aaaaaattcttcctcaaaac 81
              ||||||||||||||||||||
Sbjct: 139920 aaaaaattcttcctcaaaac 139939

---

>gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1), unknown (Z438D03.5),
             epsilon-COP (Z438D03.6), putative kinase (Z438D03.7),
             unknown (Z438D03.25), and C1-B73 (Z438D03.27) genes,
             complete cds
          Length = 185988

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   tccgcgaaaacgatggcaac 309
             ||||||||||||||||||||
Sbjct: 11813 tccgcgaaaacgatggcaac 11832

---

>emb|Z54238.1|CET28C6 Caenorhabditis elegans Cosmid T28C6, complete sequence
          Length = 33819

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   aggatgacgaggacaaggaa 350
             ||||||||||||||||||||
Sbjct: 14323 aggatgacgaggacaaggaa 14342

---

>dbj|AP001674.1| Homo sapiens genomic DNA, chromosome 21q, section 18/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     aaaaaattcttcctcaaaac 81
              ||||||||||||||||||||
Sbjct: 276715 aaaaaattcttcctcaaaac 276734

---

>dbj|AP000486.6| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-23I22, complete
              sequence
          Length = 152472

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 76     caaaactcaactgtatttctatac 99
              ||||| ||||||||||||||||||
Sbjct: 113042 caaaaatcaactgtatttctatac 113065

---

>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome
          Length = 1080084

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 391     ttgaagtagtgcacgtggaa 410
               ||||||||||||||||||||
Sbjct: 1069106 ttgaagtagtgcacgtggaa 1069087

---

>dbj|AP003467.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1205A7
          Length = 150708

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 67    attcttcctcaaaactcaactgta 90
             |||||||| |||||||||||||||
Sbjct: 90541 attcttccacaaaactcaactgta 90518

---

>emb|AL157359.1|HSP19646 Homo sapiens chromosome 21 sequence from PAC RP4-646P19 map 21q21
            region D21S189-LA297, complete sequence
          Length = 121360

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 62   aaaaaattcttcctcaaaac 81
            ||||||||||||||||||||
Sbjct: 1095 aaaaaattcttcctcaaaac 1076

---

>emb|CT571261.1| Medicago truncatula chromosome 5 clone mth2-67l4, COMPLETE SEQUENCE
          Length = 136545

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 63    aaaaattcttcctcaaaactcaac 86
             |||||||||||||| |||||||||
Sbjct: 58235 aaaaattcttcctctaaactcaac 58212

---

>emb|AL669959.22| Mouse DNA sequence from clone RP23-221H6 on chromosome 4, complete
             sequence
          Length = 213801

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    aattcttcctcaaaactcaa 85
             ||||||||||||||||||||
Sbjct: 23072 aattcttcctcaaaactcaa 23053

---

>dbj|AP003551.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1967D12, complete
            sequence
          Length = 160952

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 67   attcttcctcaaaactcaactgta 90
            |||||||| |||||||||||||||
Sbjct: 8941 attcttccacaaaactcaactgta 8918


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,236,203
Number of Sequences: 3902068
Number of extensions: 4236203
Number of successful extensions: 79330
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79108
Number of HSP's gapped (non-prelim): 210
length of query: 527
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 504
effective length of database: 17,143,297,704
effective search space: 8640222042816
effective search space used: 8640222042816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---