Clone Name | rbah61e16 |
---|---|
Clone Library Name | barley_pub |
>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds Length = 777 Score = 765 bits (386), Expect = 0.0 Identities = 393/394 (99%), Gaps = 1/394 (0%) Strand = Plus / Minus Query: 1 ccgagaagagatggcatgatctggagacatcgtacatgcatgccacctattaatctactt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 717 ccgagaagagatggcatgatctggagacatcgtacatgcatgccacctattaatctactt 658 Query: 61 gaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgccggatac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 657 gaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgccggatac 598 Query: 121 accgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 597 accgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtc 538 Query: 181 ggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgccctcgtt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 537 ggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgccctcgtt 478 Query: 241 gaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagtccgatggc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 477 gaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagtccgatggc 418 Query: 301 gccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagtgagcgcga 360 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 417 gccgagtgtgccggcctgtccgtgca-cgggcgtgttgcggagcgggccagtgagcgcga 359 Query: 361 aggggccgacgaggaggtagccatgggcgaggcc 394 |||||||||||||||||||||||||||||||||| Sbjct: 358 aggggccgacgaggaggtagccatgggcgaggcc 325
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 400 bits (202), Expect = e-108 Identities = 308/342 (90%), Gaps = 1/342 (0%) Strand = Plus / Minus Query: 53 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 13161383 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 13161324 Query: 113 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 13161323 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 13161264 Query: 173 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 13161263 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 13161204 Query: 233 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 13161203 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 13161144 Query: 293 ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352 || ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| || Sbjct: 13161143 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 13161085 Query: 353 gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394 |||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 13161084 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 13161043
>dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D08, full insert sequence Length = 923 Score = 400 bits (202), Expect = e-108 Identities = 308/342 (90%), Gaps = 1/342 (0%) Strand = Plus / Minus Query: 53 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 690 Query: 113 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 689 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 630 Query: 173 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 629 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 570 Query: 233 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 569 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 510 Query: 293 ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352 || ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| || Sbjct: 509 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 451 Query: 353 gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394 |||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 450 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 409
>dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F01, full insert sequence Length = 932 Score = 400 bits (202), Expect = e-108 Identities = 308/342 (90%), Gaps = 1/342 (0%) Strand = Plus / Minus Query: 53 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 699 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 640 Query: 113 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 639 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 580 Query: 173 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 579 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 520 Query: 233 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 519 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 460 Query: 293 ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352 || ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| || Sbjct: 459 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 401 Query: 353 gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394 |||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 400 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 359
>dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B01, full insert sequence Length = 985 Score = 400 bits (202), Expect = e-108 Identities = 308/342 (90%), Gaps = 1/342 (0%) Strand = Plus / Minus Query: 53 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 721 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 662 Query: 113 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 661 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 602 Query: 173 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 601 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 542 Query: 233 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 541 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 482 Query: 293 ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352 || ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| || Sbjct: 481 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 423 Query: 353 gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394 |||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 422 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 381
>dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A09, full insert sequence Length = 923 Score = 400 bits (202), Expect = e-108 Identities = 308/342 (90%), Gaps = 1/342 (0%) Strand = Plus / Minus Query: 53 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 690 Query: 113 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 689 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 630 Query: 173 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 629 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 570 Query: 233 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 569 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 510 Query: 293 ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352 || ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| || Sbjct: 509 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 451 Query: 353 gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394 |||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 450 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 409
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 400 bits (202), Expect = e-108 Identities = 308/342 (90%), Gaps = 1/342 (0%) Strand = Plus / Minus Query: 53 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 13115658 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 13115599 Query: 113 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 13115598 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 13115539 Query: 173 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 13115538 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 13115479 Query: 233 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 13115478 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 13115419 Query: 293 ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352 || ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| || Sbjct: 13115418 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 13115360 Query: 353 gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394 |||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 13115359 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 13115318
>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 193499 Score = 400 bits (202), Expect = e-108 Identities = 308/342 (90%), Gaps = 1/342 (0%) Strand = Plus / Plus Query: 53 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 169359 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 169418 Query: 113 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 169419 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 169478 Query: 173 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 169479 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 169538 Query: 233 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 169539 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 169598 Query: 293 ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352 || ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| || Sbjct: 169599 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 169657 Query: 353 gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394 |||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 169658 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 169699
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178827 Score = 400 bits (202), Expect = e-108 Identities = 308/342 (90%), Gaps = 1/342 (0%) Strand = Plus / Minus Query: 53 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 150586 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 150527 Query: 113 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 150526 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 150467 Query: 173 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 150466 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 150407 Query: 233 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 150406 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 150347 Query: 293 ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352 || ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| || Sbjct: 150346 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 150288 Query: 353 gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394 |||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 150287 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 150246
>dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F07, full insert sequence Length = 964 Score = 392 bits (198), Expect = e-106 Identities = 307/342 (89%), Gaps = 1/342 (0%) Strand = Plus / Minus Query: 53 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112 ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| | || Sbjct: 704 atctacttgaagaagtacgggagatcgagcacgtagaggaggaagtaggcccagaggacg 645 Query: 113 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 644 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 585 Query: 173 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 584 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 525 Query: 233 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 524 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 465 Query: 293 ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352 || ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| || Sbjct: 464 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 406 Query: 353 gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394 |||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 405 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 364
>gb|AY103985.1| Zea mays PCO103239 mRNA sequence Length = 1657 Score = 343 bits (173), Expect = 3e-91 Identities = 300/341 (87%), Gaps = 1/341 (0%) Strand = Plus / Minus Query: 54 tctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgc 113 |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||| Sbjct: 1499 tctacttgaagaagtaggggaggtcgagcacgtagaggagaaagtaggcccagagcacgc 1440 Query: 114 cggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgga 173 |||| | |||||||||||||| || |||||||||| | ||| || ||||||||||| | Sbjct: 1439 cggagatgccgccgaagaagaaccccccggtgaacttggcccagccgtcggcggtctgca 1380 Query: 174 gcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgc 233 ||||||||||||||||||| | |||||||| |||||| ||||| |||||||| || | Sbjct: 1379 gcttgtcggcctccttcttcctgccggtgagcgtgagcgtgggcgccgtggacgggtccc 1320 Query: 234 cctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagtc 293 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct: 1319 cctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggc 1260 Query: 294 cgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagtg 353 || ||||||||| | ||||||||| ||||||| |||||||| ||||||||||||| ||| Sbjct: 1259 cggcggcgccgagcgcgccggcctggccgtgca-cgggcgtgctgcggagcgggcccgtg 1201 Query: 354 agcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394 ||||||||||| || |||||||||||||| || |||||||| Sbjct: 1200 agcgcgaagggccccacgaggaggtagccgtgcgcgaggcc 1160
>emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment 08RG108F Length = 162 Score = 77.8 bits (39), Expect = 2e-11 Identities = 52/55 (94%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 54 tctacttgaagaagtatgggaggtcgagc-acgtagaggaggaagtatgcccaga 107 |||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| Sbjct: 109 tctacttgaagaagtacgggaggtcgagctacgtagaggaggaagtaggcccaga 55
>dbj|D50456.1|CUSPSAL Cucumis sativus mRNA for PsaL, complete cds Length = 812 Score = 56.0 bits (28), Expect = 9e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 52 aatctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccaga 107 ||||||||||| | |||| |||||||| | || |||||||||||||||||||||| Sbjct: 737 aatctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 682
>dbj|D83007.1|CUSPSALG Cucumis sativus seedling cotyledon psaL mRNA for subunit of photosystem I, complete cds Length = 811 Score = 56.0 bits (28), Expect = 9e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 52 aatctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccaga 107 ||||||||||| | |||| |||||||| | || |||||||||||||||||||||| Sbjct: 674 aatctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 619
>dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I protein, partial cds Length = 404 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 160 ttcggcggtctggagcttgtcggcctccttcttgcgtccggt 201 ||||||||| ||||||| ||||| |||||||||||| ||||| Sbjct: 183 ttcggcggtttggagctggtcgggctccttcttgcggccggt 142
>emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photosystem I reaction center Length = 834 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 113 ccggatacaccgccgaagaagaagcctccggtgaact 149 ||||| ||||| ||||||||||| ||||||||||||| Sbjct: 676 ccggaaacaccaccgaagaagaaccctccggtgaact 640
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 cggagcgggccagtgagcgcg 359 ||||||||||||||||||||| Sbjct: 4178375 cggagcgggccagtgagcgcg 4178355
>dbj|AB039379.1| Streptomyces aureofaciens tcsD, tcsE, tcsF, tcsG, genes for beta-ketoacyl synthase, beta-ketoacyl synthase2, acyl carrier protein, asparagine synthase homolog, complete cds Length = 5188 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 ccggcgcggtggacggctcgc 233 ||||||||||||||||||||| Sbjct: 2273 ccggcgcggtggacggctcgc 2293
>ref|NM_001037124.1| Danio rerio zgc:123341 (zgc:123341), mRNA Length = 1067 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 tgaggcagacgctgaggatg 283 |||||||||||||||||||| Sbjct: 297 tgaggcagacgctgaggatg 316
>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08, complete sequence Length = 136853 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 gcgaaggggccgacgaggag 376 |||||||||||||||||||| Sbjct: 96226 gcgaaggggccgacgaggag 96245
>gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0410D09, complete sequence Length = 43883 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 gcgaaggggccgacgaggag 376 |||||||||||||||||||| Sbjct: 5272 gcgaaggggccgacgaggag 5291
>gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complete sequence Length = 161199 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 aatctacttgaagaagtatg 71 |||||||||||||||||||| Sbjct: 143165 aatctacttgaagaagtatg 143184
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 ttcggcggtctggagcttgtcggc 183 |||||||| ||||||||||||||| Sbjct: 1174925 ttcggcggactggagcttgtcggc 1174948
>emb|AL023553.5|HS347H13 Human DNA sequence from clone RP3-347H13 on chromosome 22 Contains the 3' end of the ACO2 gene for mitochondrial aconitase 2, the gene for a novel protein similar to yeast DNA-directed RNA Polymerase III 25 kD Polypeptide, the gene for the human ortholog of rat Pippin, the PMM1 gene for phosphomannomutase 1 (PMMH-22, yeast SEC53 ortholog), and two novel genes. Contains ESTs, STSs, GSSs and two putative CpG islands, complete sequence Length = 107818 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 agaggaggaagtatgcccag 106 |||||||||||||||||||| Sbjct: 64984 agaggaggaagtatgcccag 65003
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 attaatctacttgaagaagt 68 |||||||||||||||||||| Sbjct: 781146 attaatctacttgaagaagt 781165
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 gcgaaggggccgacgaggag 376 |||||||||||||||||||| Sbjct: 18238013 gcgaaggggccgacgaggag 18238032
>gb|AY826885.1| Heterocapsa triquetra clone HTPSAL1 chloroplast photosystem I subunit XI mRNA, complete cds; nuclear gene for chloroplast product Length = 1197 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 ggcgtgttgcggagcgggcc 349 |||||||||||||||||||| Sbjct: 911 ggcgtgttgcggagcgggcc 892
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 gcgaaggggccgacgaggag 376 |||||||||||||||||||| Sbjct: 18396910 gcgaaggggccgacgaggag 18396929
>gb|BC107646.1| Danio rerio zgc:123341, mRNA (cDNA clone MGC:123341 IMAGE:7413031), complete cds Length = 1067 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 tgaggcagacgctgaggatg 283 |||||||||||||||||||| Sbjct: 297 tgaggcagacgctgaggatg 316
>gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3p, complete sequence Length = 189097 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 tcgtacatgcatgccaccta 49 |||||||||||||||||||| Sbjct: 81350 tcgtacatgcatgccaccta 81369
>emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on chromosome 2, complete sequence Length = 209560 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 aatctacttgaagaagtatg 71 |||||||||||||||||||| Sbjct: 121761 aatctacttgaagaagtatg 121780 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,403,654 Number of Sequences: 3902068 Number of extensions: 2403654 Number of successful extensions: 37955 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37722 Number of HSP's gapped (non-prelim): 221 length of query: 394 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 372 effective length of database: 17,147,199,772 effective search space: 6378758315184 effective search space used: 6378758315184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)