ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61e16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L... 765 0.0
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 400 e-108
3dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clon... 400 e-108
4dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clon... 400 e-108
5dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clon... 400 e-108
6dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 400 e-108
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 400 e-108
8emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112... 400 e-108
9emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa... 400 e-108
10dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clon... 392 e-106
11gb|AY103985.1| Zea mays PCO103239 mRNA sequence 343 3e-91
12emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment ... 78 2e-11
13dbj|D50456.1|CUSPSAL Cucumis sativus mRNA for PsaL, complete cds 56 9e-05
14dbj|D83007.1|CUSPSALG Cucumis sativus seedling cotyledon psaL mR... 56 9e-05
15dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I... 52 0.001
16emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photo... 50 0.005
17dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.3
18dbj|AB039379.1| Streptomyces aureofaciens tcsD, tcsE, tcsF, tcsG... 42 1.3
19ref|NM_001037124.1| Danio rerio zgc:123341 (zgc:123341), mRNA 40 5.3
20gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
21gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
22gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complet... 40 5.3
23gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 5.3
24emb|AL023553.5|HS347H13 Human DNA sequence from clone RP3-347H13... 40 5.3
25gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 2734... 40 5.3
26dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
27gb|AY826885.1| Heterocapsa triquetra clone HTPSAL1 chloroplast p... 40 5.3
28gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
29gb|BC107646.1| Danio rerio zgc:123341, mRNA (cDNA clone MGC:1233... 40 5.3
30gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3... 40 5.3
31emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on ch... 40 5.3

>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds
          Length = 777

 Score =  765 bits (386), Expect = 0.0
 Identities = 393/394 (99%), Gaps = 1/394 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgagaagagatggcatgatctggagacatcgtacatgcatgccacctattaatctactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ccgagaagagatggcatgatctggagacatcgtacatgcatgccacctattaatctactt 658

                                                                       
Query: 61  gaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgccggatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgccggatac 598

                                                                       
Query: 121 accgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 accgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtc 538

                                                                       
Query: 181 ggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgccctcgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgccctcgtt 478

                                                                       
Query: 241 gaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagtccgatggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagtccgatggc 418

                                                                       
Query: 301 gccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagtgagcgcga 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 417 gccgagtgtgccggcctgtccgtgca-cgggcgtgttgcggagcgggccagtgagcgcga 359

                                             
Query: 361 aggggccgacgaggaggtagccatgggcgaggcc 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 358 aggggccgacgaggaggtagccatgggcgaggcc 325



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  400 bits (202), Expect = e-108
 Identities = 308/342 (90%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                            
Query: 53       atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112
                ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 13161383 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 13161324

                                                                            
Query: 113      ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172
                ||||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 13161323 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 13161264

                                                                            
Query: 173      agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232
                ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 13161263 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 13161204

                                                                            
Query: 233      ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292
                ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 13161203 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 13161144

                                                                            
Query: 293      ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352
                ||   ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 13161143 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 13161085

                                                          
Query: 353      gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394
                |||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 13161084 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 13161043



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>dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D08, full
           insert sequence
          Length = 923

 Score =  400 bits (202), Expect = e-108
 Identities = 308/342 (90%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 53  atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 690

                                                                       
Query: 113 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172
           ||||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 689 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 630

                                                                       
Query: 173 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232
           ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 629 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 570

                                                                       
Query: 233 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292
           ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 569 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 510

                                                                       
Query: 293 ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352
           ||   ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 509 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 451

                                                     
Query: 353 gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394
           |||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 450 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 409



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>dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F01, full
           insert sequence
          Length = 932

 Score =  400 bits (202), Expect = e-108
 Identities = 308/342 (90%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 53  atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 699 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 640

                                                                       
Query: 113 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172
           ||||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 639 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 580

                                                                       
Query: 173 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232
           ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 579 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 520

                                                                       
Query: 233 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292
           ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 519 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 460

                                                                       
Query: 293 ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352
           ||   ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 459 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 401

                                                     
Query: 353 gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394
           |||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 400 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 359



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>dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B01, full
           insert sequence
          Length = 985

 Score =  400 bits (202), Expect = e-108
 Identities = 308/342 (90%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 53  atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 721 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 662

                                                                       
Query: 113 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172
           ||||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 661 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 602

                                                                       
Query: 173 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232
           ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 601 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 542

                                                                       
Query: 233 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292
           ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 541 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 482

                                                                       
Query: 293 ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352
           ||   ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 481 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 423

                                                     
Query: 353 gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394
           |||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 422 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 381



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>dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A09, full
           insert sequence
          Length = 923

 Score =  400 bits (202), Expect = e-108
 Identities = 308/342 (90%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 53  atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 690

                                                                       
Query: 113 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172
           ||||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 689 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 630

                                                                       
Query: 173 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232
           ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 629 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 570

                                                                       
Query: 233 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292
           ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 569 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 510

                                                                       
Query: 293 ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352
           ||   ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 509 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 451

                                                     
Query: 353 gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394
           |||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 450 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 409



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  400 bits (202), Expect = e-108
 Identities = 308/342 (90%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                            
Query: 53       atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112
                ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 13115658 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 13115599

                                                                            
Query: 113      ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172
                ||||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 13115598 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 13115539

                                                                            
Query: 173      agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232
                ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 13115538 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 13115479

                                                                            
Query: 233      ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292
                ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 13115478 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 13115419

                                                                            
Query: 293      ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352
                ||   ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 13115418 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 13115360

                                                          
Query: 353      gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394
                |||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 13115359 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 13115318



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>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 193499

 Score =  400 bits (202), Expect = e-108
 Identities = 308/342 (90%), Gaps = 1/342 (0%)
 Strand = Plus / Plus

                                                                          
Query: 53     atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112
              ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 169359 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 169418

                                                                          
Query: 113    ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172
              ||||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 169419 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 169478

                                                                          
Query: 173    agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232
              ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 169479 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 169538

                                                                          
Query: 233    ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292
              ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 169539 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 169598

                                                                          
Query: 293    ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352
              ||   ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 169599 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 169657

                                                        
Query: 353    gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394
              |||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 169658 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 169699



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>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 178827

 Score =  400 bits (202), Expect = e-108
 Identities = 308/342 (90%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                          
Query: 53     atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112
              ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct: 150586 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 150527

                                                                          
Query: 113    ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172
              ||||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 150526 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 150467

                                                                          
Query: 173    agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232
              ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 150466 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 150407

                                                                          
Query: 233    ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292
              ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 150406 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 150347

                                                                          
Query: 293    ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352
              ||   ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 150346 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 150288

                                                        
Query: 353    gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394
              |||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 150287 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 150246



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>dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F07, full
           insert sequence
          Length = 964

 Score =  392 bits (198), Expect = e-106
 Identities = 307/342 (89%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 53  atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 112
           ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| | ||
Sbjct: 704 atctacttgaagaagtacgggagatcgagcacgtagaggaggaagtaggcccagaggacg 645

                                                                       
Query: 113 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 172
           ||||| |  ||||||||||||||||| ||||||||||  | ||| || ||||||||||| 
Sbjct: 644 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 585

                                                                       
Query: 173 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 232
           ||||||||||||||||||||||| |||||||| || |||  |||||| ||||||||||||
Sbjct: 584 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 525

                                                                       
Query: 233 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 292
           ||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 524 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 465

                                                                       
Query: 293 ccgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagt 352
           ||   ||||||||| | ||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 464 cctgcggcgccgagggcgccggcctggccgtgcacc-ggcgtgttgcggagcgggccggt 406

                                                     
Query: 353 gagcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394
           |||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 405 gagcgcgaagggcccgacgaggaggtagccgtgggcgaggcc 364



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>gb|AY103985.1| Zea mays PCO103239 mRNA sequence
          Length = 1657

 Score =  343 bits (173), Expect = 3e-91
 Identities = 300/341 (87%), Gaps = 1/341 (0%)
 Strand = Plus / Minus

                                                                        
Query: 54   tctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgc 113
            |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||   |||
Sbjct: 1499 tctacttgaagaagtaggggaggtcgagcacgtagaggagaaagtaggcccagagcacgc 1440

                                                                        
Query: 114  cggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgga 173
            |||| |  |||||||||||||| || ||||||||||  | ||| || ||||||||||| |
Sbjct: 1439 cggagatgccgccgaagaagaaccccccggtgaacttggcccagccgtcggcggtctgca 1380

                                                                        
Query: 174  gcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgc 233
            ||||||||||||||||||| |  |||||||| ||||||   ||||| |||||||| || |
Sbjct: 1379 gcttgtcggcctccttcttcctgccggtgagcgtgagcgtgggcgccgtggacgggtccc 1320

                                                                        
Query: 234  cctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagtc 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 1319 cctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggc 1260

                                                                        
Query: 294  cgatggcgccgagtgtgccggcctgtccgtgcaccgggcgtgttgcggagcgggccagtg 353
            ||  ||||||||| | ||||||||| ||||||| |||||||| ||||||||||||| |||
Sbjct: 1259 cggcggcgccgagcgcgccggcctggccgtgca-cgggcgtgctgcggagcgggcccgtg 1201

                                                     
Query: 354  agcgcgaaggggccgacgaggaggtagccatgggcgaggcc 394
            ||||||||||| || |||||||||||||| || ||||||||
Sbjct: 1200 agcgcgaagggccccacgaggaggtagccgtgcgcgaggcc 1160



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>emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment 08RG108F
          Length = 162

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 52/55 (94%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                  
Query: 54  tctacttgaagaagtatgggaggtcgagc-acgtagaggaggaagtatgcccaga 107
           |||||||||||||||| |||||||||||| ||||||||||||||||| |||||||
Sbjct: 109 tctacttgaagaagtacgggaggtcgagctacgtagaggaggaagtaggcccaga 55



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>dbj|D50456.1|CUSPSAL Cucumis sativus mRNA for PsaL, complete cds
          Length = 812

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 52  aatctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccaga 107
           ||||||||||| | |||| |||||||| |  || ||||||||||||||||||||||
Sbjct: 737 aatctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 682



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>dbj|D83007.1|CUSPSALG Cucumis sativus seedling cotyledon psaL mRNA for subunit of
           photosystem I, complete cds
          Length = 811

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 52  aatctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccaga 107
           ||||||||||| | |||| |||||||| |  || ||||||||||||||||||||||
Sbjct: 674 aatctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 619



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>dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I protein, partial
           cds
          Length = 404

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 160 ttcggcggtctggagcttgtcggcctccttcttgcgtccggt 201
           ||||||||| ||||||| ||||| |||||||||||| |||||
Sbjct: 183 ttcggcggtttggagctggtcgggctccttcttgcggccggt 142



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>emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photosystem I reaction
           center
          Length = 834

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 113 ccggatacaccgccgaagaagaagcctccggtgaact 149
           ||||| ||||| ||||||||||| |||||||||||||
Sbjct: 676 ccggaaacaccaccgaagaagaaccctccggtgaact 640



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 339     cggagcgggccagtgagcgcg 359
               |||||||||||||||||||||
Sbjct: 4178375 cggagcgggccagtgagcgcg 4178355



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>dbj|AB039379.1| Streptomyces aureofaciens tcsD, tcsE, tcsF, tcsG, genes for
            beta-ketoacyl synthase, beta-ketoacyl synthase2, acyl
            carrier protein, asparagine synthase homolog, complete
            cds
          Length = 5188

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 213  ccggcgcggtggacggctcgc 233
            |||||||||||||||||||||
Sbjct: 2273 ccggcgcggtggacggctcgc 2293



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>ref|NM_001037124.1| Danio rerio zgc:123341 (zgc:123341), mRNA
          Length = 1067

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 264 tgaggcagacgctgaggatg 283
           ||||||||||||||||||||
Sbjct: 297 tgaggcagacgctgaggatg 316



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>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08,
             complete sequence
          Length = 136853

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   gcgaaggggccgacgaggag 376
             ||||||||||||||||||||
Sbjct: 96226 gcgaaggggccgacgaggag 96245



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>gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0410D09,
            complete sequence
          Length = 43883

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 357  gcgaaggggccgacgaggag 376
            ||||||||||||||||||||
Sbjct: 5272 gcgaaggggccgacgaggag 5291



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>gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complete sequence
          Length = 161199

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     aatctacttgaagaagtatg 71
              ||||||||||||||||||||
Sbjct: 143165 aatctacttgaagaagtatg 143184



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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 160     ttcggcggtctggagcttgtcggc 183
               |||||||| |||||||||||||||
Sbjct: 1174925 ttcggcggactggagcttgtcggc 1174948



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>emb|AL023553.5|HS347H13 Human DNA sequence from clone RP3-347H13 on chromosome 22 Contains the
             3' end of the ACO2 gene for mitochondrial aconitase 2, the
             gene for a novel protein similar to yeast DNA-directed RNA
             Polymerase III 25 kD  Polypeptide, the gene for the human
             ortholog of rat Pippin, the PMM1 gene for
             phosphomannomutase 1 (PMMH-22, yeast SEC53 ortholog), and
             two novel genes. Contains ESTs, STSs, GSSs and  two
             putative CpG islands, complete sequence
          Length = 107818

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    agaggaggaagtatgcccag 106
             ||||||||||||||||||||
Sbjct: 64984 agaggaggaagtatgcccag 65003



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>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome
          Length = 1010023

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     attaatctacttgaagaagt 68
              ||||||||||||||||||||
Sbjct: 781146 attaatctacttgaagaagt 781165



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 357      gcgaaggggccgacgaggag 376
                ||||||||||||||||||||
Sbjct: 18238013 gcgaaggggccgacgaggag 18238032



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>gb|AY826885.1| Heterocapsa triquetra clone HTPSAL1 chloroplast photosystem I
           subunit XI mRNA, complete cds; nuclear gene for
           chloroplast product
          Length = 1197

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 330 ggcgtgttgcggagcgggcc 349
           ||||||||||||||||||||
Sbjct: 911 ggcgtgttgcggagcgggcc 892



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 357      gcgaaggggccgacgaggag 376
                ||||||||||||||||||||
Sbjct: 18396910 gcgaaggggccgacgaggag 18396929



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>gb|BC107646.1| Danio rerio zgc:123341, mRNA (cDNA clone MGC:123341 IMAGE:7413031),
           complete cds
          Length = 1067

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 264 tgaggcagacgctgaggatg 283
           ||||||||||||||||||||
Sbjct: 297 tgaggcagacgctgaggatg 316



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>gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3p, complete sequence
          Length = 189097

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    tcgtacatgcatgccaccta 49
             ||||||||||||||||||||
Sbjct: 81350 tcgtacatgcatgccaccta 81369



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>emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on chromosome 2, complete
              sequence
          Length = 209560

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     aatctacttgaagaagtatg 71
              ||||||||||||||||||||
Sbjct: 121761 aatctacttgaagaagtatg 121780


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,403,654
Number of Sequences: 3902068
Number of extensions: 2403654
Number of successful extensions: 37955
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37722
Number of HSP's gapped (non-prelim): 221
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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