ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61e15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZN514_HUMAN (Q96K75) Zinc finger protein 514 29 3.1
2TGB2_PVXHB (Q07633) TGB2 protein (Triple gene block 2 protein) (... 28 5.3
3CUT1_SCHPO (P18296) Separin (EC 3.4.22.49) (Separase) (Cell unti... 27 9.1
4RS13_MESFL (Q6F1W9) 30S ribosomal protein S13 27 9.1
5SRX10_CAEEL (P34551) Serpentine receptor class XA 10 (Protein sr... 27 9.1
6MTB1_BREEP (P10283) Modification methylase BepI (EC 2.1.1.37) (C... 27 9.1

>ZN514_HUMAN (Q96K75) Zinc finger protein 514|
          Length = 400

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
 Frame = +2

Query: 155 HLKYKKYSCXKPFLTILQIS---------TDRPPFKIQKTDRQEASTSKLWLFFKFHTIN 307
           H   K Y C +   T  Q S         T   P+K  K  R  + +S L   ++FHT  
Sbjct: 310 HTGEKPYECRECGRTFSQSSSLIVHYRFHTGEKPYKCNKCGRAFSQSSSLTQHYRFHTGE 369

Query: 308 XKEQIXGCLRSIXH 349
              +   C R+  H
Sbjct: 370 KPYKCNECGRAFAH 383



to top

>TGB2_PVXHB (Q07633) TGB2 protein (Triple gene block 2 protein) (TGBp2) (12 kDa|
           protein) (ORF 3 protein)
          Length = 115

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +1

Query: 184 EAVLNNSPNFNRQTAL*NSKD 246
           +A+L NSPNF  +T+L NSK+
Sbjct: 60  KAILYNSPNFGSRTSLNNSKN 80



to top

>CUT1_SCHPO (P18296) Separin (EC 3.4.22.49) (Separase) (Cell untimely torn|
           protein 1)
          Length = 1828

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 118 LVSCXFFFSEGRRTIGFILEGHIICTRCYSY 26
           LV      S+   T+GF  + H+  T+CYSY
Sbjct: 836 LVIIGTLLSDKYMTLGFSGKAHLFYTKCYSY 866



to top

>RS13_MESFL (Q6F1W9) 30S ribosomal protein S13|
          Length = 121

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 200 ILQISTDRPPFKIQKTDRQEASTSKLWLFFKFHTINXKEQIX-GCLRSIXHRKMQPVEG 373
           I  IST+   FK++   R+E S            +N K  +  GC R + HRK  PV G
Sbjct: 53  IKAISTEISNFKVEGELRREVS------------LNIKRLMEIGCYRGLRHRKGLPVRG 99



to top

>SRX10_CAEEL (P34551) Serpentine receptor class XA 10 (Protein srxa-10)|
          Length = 319

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 188 PFLTILQISTDRPPFKIQKTDRQEASTSKLWLFFKFH 298
           P LT++ ++ +R    +     Q  ++SK+WL+  FH
Sbjct: 98  PMLTLILMTINRIAVVVSMQASQLFTSSKIWLYTSFH 134



to top

>MTB1_BREEP (P10283) Modification methylase BepI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase BepI) (M.BepI)
          Length = 403

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 185 KPFLTILQISTDRPPFKIQKTDRQEASTSKLWLFFK 292
           KP+ T+ QI    P  ++  TD+ + S SK  LF K
Sbjct: 258 KPYATLNQILAHLPEPELASTDKSQQSYSKAKLFKK 293


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,740,646
Number of Sequences: 219361
Number of extensions: 708517
Number of successful extensions: 1401
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top