Clone Name | rbah61e15 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 235 aattcaaaagacagacaggcaagaag 260 ||||||||||||||||||| |||||| Sbjct: 8373764 aattcaaaagacagacaggtaagaag 8373739
>gb|AC114553.6| Mus musculus chromosome 5, clone RP23-408M16, complete sequence Length = 198281 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 ttcttcaaatttcatacaataa 305 |||||||||||||||||||||| Sbjct: 150042 ttcttcaaatttcatacaataa 150063
>emb|BX323555.10| Zebrafish DNA sequence from clone DKEY-163M14 in linkage group 21, complete sequence Length = 180416 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 230 tttaaaattcaaaagacagacaggca 255 |||||| ||||||||||||||||||| Sbjct: 130141 tttaaacttcaaaagacagacaggca 130116
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 235 aattcaaaagacagacaggcaagaag 260 ||||||||||||||||||| |||||| Sbjct: 8371599 aattcaaaagacagacaggtaagaag 8371574
>gb|AC135495.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1664B11, complete sequence Length = 126040 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 235 aattcaaaagacagacaggcaagaag 260 ||||||||||||||||||| |||||| Sbjct: 111020 aattcaaaagacagacaggtaagaag 110995
>gb|AY528719.1| Homo sapiens estrogen-related receptor gamma (ESRRG) gene, complete cds Length = 590284 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 attcaaaagacagacaggcaa 256 ||||||||||||||||||||| Sbjct: 176761 attcaaaagacagacaggcaa 176741
>emb|AL512626.8| Human DNA sequence from clone RP11-163I12 on chromosome 1 Contains part of the ESRRG gene for estrogen-related receptor gamma, complete sequence Length = 106859 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 attcaaaagacagacaggcaa 256 ||||||||||||||||||||| Sbjct: 49720 attcaaaagacagacaggcaa 49740
>emb|AL023513.1|HS268D13 Human DNA sequence from clone RP1-268D13 on chromosome 22q11.21-12.2, complete sequence Length = 115863 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 240 aaaagacagacaggcaagaag 260 ||||||||||||||||||||| Sbjct: 49780 aaaagacagacaggcaagaag 49760
>emb|CT025594.13| Mouse DNA sequence from clone RP23-415M7 on chromosome 9, complete sequence Length = 197328 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 agacagacaggcaagaagcat 263 ||||||||||||||||||||| Sbjct: 104143 agacagacaggcaagaagcat 104123
>dbj|AP004625.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT14E05b, TM0089b, complete sequence Length = 126514 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 270 ccaagttatggttgttcttcaaatttcat 298 ||||||||||| | ||||||||||||||| Sbjct: 57389 ccaagttatggattttcttcaaatttcat 57361
>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome Length = 2401520 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 aacaatagctgtaacatctt 41 |||||||||||||||||||| Sbjct: 1911097 aacaatagctgtaacatctt 1911116
>gb|AC113063.8| Mus musculus chromosome 15, clone RP23-261F24, complete sequence Length = 218490 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 tcaaaagacagacaggcaag 257 |||||||||||||||||||| Sbjct: 131912 tcaaaagacagacaggcaag 131893
>gb|AC164982.2| Mus musculus BAC clone RP23-57A9 from chromosome 9, complete sequence Length = 247463 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ttcttaacaattctccaaat 210 |||||||||||||||||||| Sbjct: 140395 ttcttaacaattctccaaat 140376
>gb|AC124736.3| Mus musculus BAC clone RP23-318J20 from chromosome 15, complete sequence Length = 201803 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 aagcatcaacttccaagtta 277 |||||||||||||||||||| Sbjct: 106835 aagcatcaacttccaagtta 106816
>gb|AY262088.1| Dicentrarchus labrax clone DLA0111 microsatellite sequence Length = 301 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 cacctaaaatacaagaaata 174 |||||||||||||||||||| Sbjct: 253 cacctaaaatacaagaaata 234
>emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20, 10K02, 13E09, 31J16 and 01G10 from library NotreDame1 of Anopheles gambiae (African malaria mosquito) strain PEST Length = 447895 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 taaaatacaagaaatacagc 178 |||||||||||||||||||| Sbjct: 236221 taaaatacaagaaatacagc 236240
>emb|Z81522.1|CEF32B4 Caenorhabditis elegans Cosmid F32B4, complete sequence Length = 41212 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 214 aacagacagaccgccctttaaaat 237 |||||||||||||||| ||||||| Sbjct: 15961 aacagacagaccgcccattaaaat 15984
>gb|AC121787.3| Mus musculus BAC clone RP23-393K24 from chromosome 9, complete sequence Length = 200985 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ttcttaacaattctccaaat 210 |||||||||||||||||||| Sbjct: 178251 ttcttaacaattctccaaat 178232
>gb|AC163100.4| Mus musculus chromosome 15, clone RP23-404G8, complete sequence Length = 199486 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 tcaaaagacagacaggcaag 257 |||||||||||||||||||| Sbjct: 178973 tcaaaagacagacaggcaag 178992
>emb|BX890557.9| Zebrafish DNA sequence from clone DKEYP-8B8, complete sequence Length = 170862 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 taacatcttgtacatataat 52 |||||||||||||||||||| Sbjct: 8008 taacatcttgtacatataat 8027
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tggttgttcttcaaatttca 297 |||||||||||||||||||| Sbjct: 579243 tggttgttcttcaaatttca 579224
>emb|BX088526.6| Zebrafish DNA sequence from clone CH211-51H9 in linkage group 8, complete sequence Length = 187161 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 aaaattcaaaagacagacag 252 |||||||||||||||||||| Sbjct: 988 aaaattcaaaagacagacag 1007
>gb|AC151966.3| Mus musculus BAC clone RP24-178P9 from chromosome 9, complete sequence Length = 159840 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ttcttaacaattctccaaat 210 |||||||||||||||||||| Sbjct: 88588 ttcttaacaattctccaaat 88569
>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0007D08 Length = 183142 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tggttgttcttcaaatttca 297 |||||||||||||||||||| Sbjct: 169203 tggttgttcttcaaatttca 169184
>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498H04 Length = 151046 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tggttgttcttcaaatttca 297 |||||||||||||||||||| Sbjct: 6621 tggttgttcttcaaatttca 6602 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,311,956 Number of Sequences: 3902068 Number of extensions: 3311956 Number of successful extensions: 65550 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65451 Number of HSP's gapped (non-prelim): 99 length of query: 391 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 369 effective length of database: 17,147,199,772 effective search space: 6327316715868 effective search space used: 6327316715868 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)