Clone Name | rbah61e06 |
---|---|
Clone Library Name | barley_pub |
>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007B15 map S10318, complete sequence Length = 125243 Score = 115 bits (58), Expect = 9e-23 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand = Plus / Plus Query: 220 ttgattggaatggntcg-attaatagctgtagtttttgacgaacatgccctctttggcct 278 ||||||||| ||| ||| |||| ||| |||||| ||||||||||||||||| ||||||| Sbjct: 63334 ttgattggattggatcggattagtagacgtagttcttgacgaacatgccctccttggcct 63393 Query: 279 cggcggcctcnccgtcgctggtgtactttccgagctgcgc 318 |||||||||| ||||||||||||||||| ||||||||||| Sbjct: 63394 cggcggcctcgccgtcgctggtgtacttgccgagctgcgc 63433
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 115 bits (58), Expect = 9e-23 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand = Plus / Plus Query: 220 ttgattggaatggntcg-attaatagctgtagtttttgacgaacatgccctctttggcct 278 ||||||||| ||| ||| |||| ||| |||||| ||||||||||||||||| ||||||| Sbjct: 3469379 ttgattggattggatcggattagtagacgtagttcttgacgaacatgccctccttggcct 3469438 Query: 279 cggcggcctcnccgtcgctggtgtactttccgagctgcgc 318 |||||||||| ||||||||||||||||| ||||||||||| Sbjct: 3469439 cggcggcctcgccgtcgctggtgtacttgccgagctgcgc 3469478
>dbj|AK104899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C04, full insert sequence Length = 1492 Score = 115 bits (58), Expect = 9e-23 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand = Plus / Minus Query: 220 ttgattggaatggntcg-attaatagctgtagtttttgacgaacatgccctctttggcct 278 ||||||||| ||| ||| |||| ||| |||||| ||||||||||||||||| ||||||| Sbjct: 1280 ttgattggattggatcggattagtagacgtagttcttgacgaacatgccctccttggcct 1221 Query: 279 cggcggcctcnccgtcgctggtgtactttccgagctgcgc 318 |||||||||| ||||||||||||||||| ||||||||||| Sbjct: 1220 cggcggcctcgccgtcgctggtgtacttgccgagctgcgc 1181
>dbj|AK073758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068O18, full insert sequence Length = 1622 Score = 115 bits (58), Expect = 9e-23 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand = Plus / Minus Query: 220 ttgattggaatggntcg-attaatagctgtagtttttgacgaacatgccctctttggcct 278 ||||||||| ||| ||| |||| ||| |||||| ||||||||||||||||| ||||||| Sbjct: 1276 ttgattggattggatcggattagtagacgtagttcttgacgaacatgccctccttggcct 1217 Query: 279 cggcggcctcnccgtcgctggtgtactttccgagctgcgc 318 |||||||||| ||||||||||||||||| ||||||||||| Sbjct: 1216 cggcggcctcgccgtcgctggtgtacttgccgagctgcgc 1177
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 115 bits (58), Expect = 9e-23 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand = Plus / Plus Query: 220 ttgattggaatggntcg-attaatagctgtagtttttgacgaacatgccctctttggcct 278 ||||||||| ||| ||| |||| ||| |||||| ||||||||||||||||| ||||||| Sbjct: 3478083 ttgattggattggatcggattagtagacgtagttcttgacgaacatgccctccttggcct 3478142 Query: 279 cggcggcctcnccgtcgctggtgtactttccgagctgcgc 318 |||||||||| ||||||||||||||||| ||||||||||| Sbjct: 3478143 cggcggcctcgccgtcgctggtgtacttgccgagctgcgc 3478182
>dbj|D13513.1|RICCHLALD Oryza sativa gene for cytoplasmic aldolase, complete cds, clone:Aldp Length = 2915 Score = 115 bits (58), Expect = 9e-23 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand = Plus / Minus Query: 220 ttgattggaatggntcg-attaatagctgtagtttttgacgaacatgccctctttggcct 278 ||||||||| ||| ||| |||| ||| |||||| ||||||||||||||||| ||||||| Sbjct: 2808 ttgattggattggatcggattagtagacgtagttcttgacgaacatgccctccttggcct 2749 Query: 279 cggcggcctcnccgtcgctggtgtactttccgagctgcgc 318 |||||||||| ||||||||||||||||| ||||||||||| Sbjct: 2748 cggcggcctcgccgtcgctggtgtacttgccgagctgcgc 2709
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 107 bits (54), Expect = 2e-20 Identities = 68/73 (93%) Strand = Plus / Minus Query: 246 tgtagtttttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtact 305 ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct: 3543505 tgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgctggtgtact 3543446 Query: 306 ttccgagctgcgc 318 | ||||||||||| Sbjct: 3543445 tgccgagctgcgc 3543433
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 107 bits (54), Expect = 2e-20 Identities = 68/73 (93%) Strand = Plus / Minus Query: 246 tgtagtttttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtact 305 ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct: 3543450 tgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgctggtgtact 3543391 Query: 306 ttccgagctgcgc 318 | ||||||||||| Sbjct: 3543390 tgccgagctgcgc 3543378
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103647 Score = 107 bits (54), Expect = 2e-20 Identities = 68/73 (93%) Strand = Plus / Minus Query: 246 tgtagtttttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtact 305 ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct: 58433 tgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgctggtgtact 58374 Query: 306 ttccgagctgcgc 318 | ||||||||||| Sbjct: 58373 tgccgagctgcgc 58361
>gb|AY103557.1| Zea mays PCO070710 mRNA sequence Length = 1761 Score = 101 bits (51), Expect = 1e-18 Identities = 74/82 (90%) Strand = Plus / Minus Query: 237 attaatagctgtagtttttgacgaacatgccctctttggcctcggcggcctcnccgtcgc 296 |||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||| Sbjct: 1407 attagtagctgtagttcttgacgaacattccctccttggcctcggcggcctcgccgtcgg 1348 Query: 297 tggtgtactttccgagctgcgc 318 ||||||||| ||||||||||| Sbjct: 1347 aggtgtacttgccgagctgcgc 1326
>gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate aldolase precursor, mRNA, complete cds; nuclear gene for chloroplast product Length = 1577 Score = 99.6 bits (50), Expect = 5e-18 Identities = 70/77 (90%) Strand = Plus / Minus Query: 242 tagctgtagtttttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtg 301 ||||||||||| ||||||||||||||||| ||||| | |||||||| |||||||||||| Sbjct: 1261 tagctgtagttcttgacgaacatgccctccttggcggccgcggcctcgccgtcgctggtg 1202 Query: 302 tactttccgagctgcgc 318 ||||| ||||||||||| Sbjct: 1201 tacttgccgagctgcgc 1185
>gb|AF017362.1|AF017362 Oryza sativa aldolase mRNA, complete cds Length = 1302 Score = 99.6 bits (50), Expect = 5e-18 Identities = 88/100 (88%), Gaps = 1/100 (1%) Strand = Plus / Minus Query: 220 ttgattggaatggntcg-attaatagctgtagtttttgacgaacatgccctctttggcct 278 ||||||||| ||| ||| |||| ||| |||||| |||||||||||||| || ||||||| Sbjct: 1172 ttgattggattggatcggattagtagacgtagttcttgacgaacatgccttccttggcct 1113 Query: 279 cggcggcctcnccgtcgctggtgtactttccgagctgcgc 318 ||||||| || ||||||||||||||||| ||||||||||| Sbjct: 1112 cggcggcttcgccgtcgctggtgtacttgccgagctgcgc 1073
>dbj|AK105927.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A10, full insert sequence Length = 2135 Score = 69.9 bits (35), Expect = 5e-09 Identities = 43/46 (93%) Strand = Plus / Minus Query: 273 tggcctcggcggcctcnccgtcgctggtgtactttccgagctgcgc 318 ||||| |||||||||| ||||||||||||||||| ||||||||||| Sbjct: 1217 tggccgcggcggcctcgccgtcgctggtgtacttgccgagctgcgc 1172
>ref|NM_120057.2| Arabidopsis thaliana fructose-bisphosphate aldolase AT4G38970 transcript variant AT4G38970.1 mRNA, complete cds Length = 1496 Score = 48.1 bits (24), Expect = 0.017 Identities = 53/63 (84%) Strand = Plus / Minus Query: 253 tttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtactttccgag 312 |||||||||||||||||| || ||||| ||| ||| || || | |||||| |||||||| Sbjct: 1263 tttgacgaacatgccctccttagcctcttcggactcaccctcaccggtgtattttccgag 1204 Query: 313 ctg 315 ||| Sbjct: 1203 ctg 1201
>ref|NM_202981.1| Arabidopsis thaliana fructose-bisphosphate aldolase AT4G38970 transcript variant AT4G38970.2 mRNA, complete cds Length = 1500 Score = 48.1 bits (24), Expect = 0.017 Identities = 53/63 (84%) Strand = Plus / Minus Query: 253 tttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtactttccgag 312 |||||||||||||||||| || ||||| ||| ||| || || | |||||| |||||||| Sbjct: 1267 tttgacgaacatgccctccttagcctcttcggactcaccctcaccggtgtattttccgag 1208 Query: 313 ctg 315 ||| Sbjct: 1207 ctg 1205
>gb|BT015870.1| Arabidopsis thaliana At4g38970 mRNA, complete cds Length = 1197 Score = 48.1 bits (24), Expect = 0.017 Identities = 53/63 (84%) Strand = Plus / Minus Query: 253 tttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtactttccgag 312 |||||||||||||||||| || ||||| ||| ||| || || | |||||| |||||||| Sbjct: 1182 tttgacgaacatgccctccttagcctcttcggactcaccctcaccggtgtattttccgag 1123 Query: 313 ctg 315 ||| Sbjct: 1122 ctg 1120
>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90 Length = 198987 Score = 48.1 bits (24), Expect = 0.017 Identities = 53/63 (84%) Strand = Plus / Plus Query: 253 tttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtactttccgag 312 |||||||||||||||||| || ||||| ||| ||| || || | |||||| |||||||| Sbjct: 77884 tttgacgaacatgccctccttagcctcttcggactcaccctcaccggtgtattttccgag 77943 Query: 313 ctg 315 ||| Sbjct: 77944 ctg 77946
>emb|AL035679.1|ATF19H22 Arabidopsis thaliana DNA chromosome 4, BAC clone F19H22 (ESSA project) Length = 100469 Score = 48.1 bits (24), Expect = 0.017 Identities = 53/63 (84%) Strand = Plus / Plus Query: 253 tttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtactttccgag 312 |||||||||||||||||| || ||||| ||| ||| || || | |||||| |||||||| Sbjct: 39874 tttgacgaacatgccctccttagcctcttcggactcaccctcaccggtgtattttccgag 39933 Query: 313 ctg 315 ||| Sbjct: 39934 ctg 39936
>gb|AF428455.1|AF428455 Arabidopsis thaliana AT4g38970/F19H22_70 mRNA, complete cds Length = 1419 Score = 48.1 bits (24), Expect = 0.017 Identities = 53/63 (84%) Strand = Plus / Minus Query: 253 tttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtactttccgag 312 |||||||||||||||||| || ||||| ||| ||| || || | |||||| |||||||| Sbjct: 1257 tttgacgaacatgccctccttagcctcttcggactcaccctcaccggtgtattttccgag 1198 Query: 313 ctg 315 ||| Sbjct: 1197 ctg 1195
>emb|BX828075.1|CNS0A3X4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH4ZH02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1370 Score = 48.1 bits (24), Expect = 0.017 Identities = 53/63 (84%) Strand = Plus / Minus Query: 253 tttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtactttccgag 312 |||||||||||||||||| || ||||| ||| ||| || || | |||||| |||||||| Sbjct: 1252 tttgacgaacatgccctccttagcctcttcggactcaccctcaccggtgtattttccgag 1193 Query: 313 ctg 315 ||| Sbjct: 1192 ctg 1190
>ref|XM_773322.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_291_48061_46229) partial mRNA Length = 1833 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 169 gatcgatatatgatgcatctttctg 193 ||||||||||||||||| ||||||| Sbjct: 1414 gatcgatatatgatgcaactttctg 1390
>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome Length = 1499920 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 gatctagaaaatacagtaatc 141 ||||||||||||||||||||| Sbjct: 514505 gatctagaaaatacagtaatc 514485
>gb|AC009039.7| Homo sapiens chromosome 16 clone RP11-152O14, complete sequence Length = 163228 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 122 atctagaaaatacagtaatcatcat 146 ||||| ||||||||||||||||||| Sbjct: 76537 atctacaaaatacagtaatcatcat 76513 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,161,872 Number of Sequences: 3902068 Number of extensions: 2161872 Number of successful extensions: 37126 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37028 Number of HSP's gapped (non-prelim): 98 length of query: 320 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 298 effective length of database: 17,147,199,772 effective search space: 5109865532056 effective search space used: 5109865532056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)