ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome... 115 9e-23
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 115 9e-23
3dbj|AK104899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 9e-23
4dbj|AK073758.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 9e-23
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 115 9e-23
6dbj|D13513.1|RICCHLALD Oryza sativa gene for cytoplasmic aldolas... 115 9e-23
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 107 2e-20
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 107 2e-20
9emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007... 107 2e-20
10gb|AY103557.1| Zea mays PCO070710 mRNA sequence 101 1e-18
11gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate al... 100 5e-18
12gb|AF017362.1|AF017362 Oryza sativa aldolase mRNA, complete cds 100 5e-18
13dbj|AK105927.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 5e-09
14ref|NM_120057.2| Arabidopsis thaliana fructose-bisphosphate aldo... 48 0.017
15ref|NM_202981.1| Arabidopsis thaliana fructose-bisphosphate aldo... 48 0.017
16gb|BT015870.1| Arabidopsis thaliana At4g38970 mRNA, complete cds 48 0.017
17emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, ... 48 0.017
18emb|AL035679.1|ATF19H22 Arabidopsis thaliana DNA chromosome 4, B... 48 0.017
19gb|AF428455.1|AF428455 Arabidopsis thaliana AT4g38970/F19H22_70 ... 48 0.017
20emb|BX828075.1|CNS0A3X4 Arabidopsis thaliana Full-length cDNA Co... 48 0.017
21ref|XM_773322.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 1.1
22emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 42 1.1
23gb|AC009039.7| Homo sapiens chromosome 16 clone RP11-152O14, com... 42 1.1 
>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007B15 map S10318, complete sequence
          Length = 125243

 Score =  115 bits (58), Expect = 9e-23
 Identities = 90/100 (90%), Gaps = 1/100 (1%)
 Strand = Plus / Plus

                                                                         
Query: 220   ttgattggaatggntcg-attaatagctgtagtttttgacgaacatgccctctttggcct 278
             ||||||||| ||| ||| |||| |||  |||||| ||||||||||||||||| |||||||
Sbjct: 63334 ttgattggattggatcggattagtagacgtagttcttgacgaacatgccctccttggcct 63393

                                                     
Query: 279   cggcggcctcnccgtcgctggtgtactttccgagctgcgc 318
             |||||||||| ||||||||||||||||| |||||||||||
Sbjct: 63394 cggcggcctcgccgtcgctggtgtacttgccgagctgcgc 63433
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  115 bits (58), Expect = 9e-23
 Identities = 90/100 (90%), Gaps = 1/100 (1%)
 Strand = Plus / Plus

                                                                           
Query: 220     ttgattggaatggntcg-attaatagctgtagtttttgacgaacatgccctctttggcct 278
               ||||||||| ||| ||| |||| |||  |||||| ||||||||||||||||| |||||||
Sbjct: 3469379 ttgattggattggatcggattagtagacgtagttcttgacgaacatgccctccttggcct 3469438

                                                       
Query: 279     cggcggcctcnccgtcgctggtgtactttccgagctgcgc 318
               |||||||||| ||||||||||||||||| |||||||||||
Sbjct: 3469439 cggcggcctcgccgtcgctggtgtacttgccgagctgcgc 3469478
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>dbj|AK104899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C04, full
            insert sequence
          Length = 1492

 Score =  115 bits (58), Expect = 9e-23
 Identities = 90/100 (90%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttgattggaatggntcg-attaatagctgtagtttttgacgaacatgccctctttggcct 278
            ||||||||| ||| ||| |||| |||  |||||| ||||||||||||||||| |||||||
Sbjct: 1280 ttgattggattggatcggattagtagacgtagttcttgacgaacatgccctccttggcct 1221

                                                    
Query: 279  cggcggcctcnccgtcgctggtgtactttccgagctgcgc 318
            |||||||||| ||||||||||||||||| |||||||||||
Sbjct: 1220 cggcggcctcgccgtcgctggtgtacttgccgagctgcgc 1181
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>dbj|AK073758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068O18, full
            insert sequence
          Length = 1622

 Score =  115 bits (58), Expect = 9e-23
 Identities = 90/100 (90%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttgattggaatggntcg-attaatagctgtagtttttgacgaacatgccctctttggcct 278
            ||||||||| ||| ||| |||| |||  |||||| ||||||||||||||||| |||||||
Sbjct: 1276 ttgattggattggatcggattagtagacgtagttcttgacgaacatgccctccttggcct 1217

                                                    
Query: 279  cggcggcctcnccgtcgctggtgtactttccgagctgcgc 318
            |||||||||| ||||||||||||||||| |||||||||||
Sbjct: 1216 cggcggcctcgccgtcgctggtgtacttgccgagctgcgc 1177
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  115 bits (58), Expect = 9e-23
 Identities = 90/100 (90%), Gaps = 1/100 (1%)
 Strand = Plus / Plus

                                                                           
Query: 220     ttgattggaatggntcg-attaatagctgtagtttttgacgaacatgccctctttggcct 278
               ||||||||| ||| ||| |||| |||  |||||| ||||||||||||||||| |||||||
Sbjct: 3478083 ttgattggattggatcggattagtagacgtagttcttgacgaacatgccctccttggcct 3478142

                                                       
Query: 279     cggcggcctcnccgtcgctggtgtactttccgagctgcgc 318
               |||||||||| ||||||||||||||||| |||||||||||
Sbjct: 3478143 cggcggcctcgccgtcgctggtgtacttgccgagctgcgc 3478182
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>dbj|D13513.1|RICCHLALD Oryza sativa gene for cytoplasmic aldolase, complete cds, clone:Aldp
          Length = 2915

 Score =  115 bits (58), Expect = 9e-23
 Identities = 90/100 (90%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttgattggaatggntcg-attaatagctgtagtttttgacgaacatgccctctttggcct 278
            ||||||||| ||| ||| |||| |||  |||||| ||||||||||||||||| |||||||
Sbjct: 2808 ttgattggattggatcggattagtagacgtagttcttgacgaacatgccctccttggcct 2749

                                                    
Query: 279  cggcggcctcnccgtcgctggtgtactttccgagctgcgc 318
            |||||||||| ||||||||||||||||| |||||||||||
Sbjct: 2748 cggcggcctcgccgtcgctggtgtacttgccgagctgcgc 2709
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  107 bits (54), Expect = 2e-20
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                           
Query: 246     tgtagtttttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtact 305
               ||||||| |||||||||||||||||  |||||||||||||||| ||||||||||||||||
Sbjct: 3543505 tgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgctggtgtact 3543446

                            
Query: 306     ttccgagctgcgc 318
               | |||||||||||
Sbjct: 3543445 tgccgagctgcgc 3543433
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  107 bits (54), Expect = 2e-20
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                           
Query: 246     tgtagtttttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtact 305
               ||||||| |||||||||||||||||  |||||||||||||||| ||||||||||||||||
Sbjct: 3543450 tgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgctggtgtact 3543391

                            
Query: 306     ttccgagctgcgc 318
               | |||||||||||
Sbjct: 3543390 tgccgagctgcgc 3543378
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>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103647

 Score =  107 bits (54), Expect = 2e-20
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                         
Query: 246   tgtagtttttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtact 305
             ||||||| |||||||||||||||||  |||||||||||||||| ||||||||||||||||
Sbjct: 58433 tgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgctggtgtact 58374

                          
Query: 306   ttccgagctgcgc 318
             | |||||||||||
Sbjct: 58373 tgccgagctgcgc 58361
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>gb|AY103557.1| Zea mays PCO070710 mRNA sequence
          Length = 1761

 Score =  101 bits (51), Expect = 1e-18
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                        
Query: 237  attaatagctgtagtttttgacgaacatgccctctttggcctcggcggcctcnccgtcgc 296
            |||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||| 
Sbjct: 1407 attagtagctgtagttcttgacgaacattccctccttggcctcggcggcctcgccgtcgg 1348

                                  
Query: 297  tggtgtactttccgagctgcgc 318
             ||||||||| |||||||||||
Sbjct: 1347 aggtgtacttgccgagctgcgc 1326
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>gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate aldolase precursor, mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1577

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                        
Query: 242  tagctgtagtttttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtg 301
            ||||||||||| ||||||||||||||||| |||||  | |||||||| ||||||||||||
Sbjct: 1261 tagctgtagttcttgacgaacatgccctccttggcggccgcggcctcgccgtcgctggtg 1202

                             
Query: 302  tactttccgagctgcgc 318
            ||||| |||||||||||
Sbjct: 1201 tacttgccgagctgcgc 1185
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>gb|AF017362.1|AF017362 Oryza sativa aldolase mRNA, complete cds
          Length = 1302

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 88/100 (88%), Gaps = 1/100 (1%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttgattggaatggntcg-attaatagctgtagtttttgacgaacatgccctctttggcct 278
            ||||||||| ||| ||| |||| |||  |||||| |||||||||||||| || |||||||
Sbjct: 1172 ttgattggattggatcggattagtagacgtagttcttgacgaacatgccttccttggcct 1113

                                                    
Query: 279  cggcggcctcnccgtcgctggtgtactttccgagctgcgc 318
            ||||||| || ||||||||||||||||| |||||||||||
Sbjct: 1112 cggcggcttcgccgtcgctggtgtacttgccgagctgcgc 1073
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>dbj|AK105927.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A10, full
            insert sequence
          Length = 2135

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                          
Query: 273  tggcctcggcggcctcnccgtcgctggtgtactttccgagctgcgc 318
            ||||| |||||||||| ||||||||||||||||| |||||||||||
Sbjct: 1217 tggccgcggcggcctcgccgtcgctggtgtacttgccgagctgcgc 1172
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>ref|NM_120057.2| Arabidopsis thaliana fructose-bisphosphate aldolase AT4G38970
            transcript variant AT4G38970.1 mRNA, complete cds
          Length = 1496

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 253  tttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtactttccgag 312
            |||||||||||||||||| || |||||  ||| ||| || || | |||||| ||||||||
Sbjct: 1263 tttgacgaacatgccctccttagcctcttcggactcaccctcaccggtgtattttccgag 1204

               
Query: 313  ctg 315
            |||
Sbjct: 1203 ctg 1201
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>ref|NM_202981.1| Arabidopsis thaliana fructose-bisphosphate aldolase AT4G38970
            transcript variant AT4G38970.2 mRNA, complete cds
          Length = 1500

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 253  tttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtactttccgag 312
            |||||||||||||||||| || |||||  ||| ||| || || | |||||| ||||||||
Sbjct: 1267 tttgacgaacatgccctccttagcctcttcggactcaccctcaccggtgtattttccgag 1208

               
Query: 313  ctg 315
            |||
Sbjct: 1207 ctg 1205
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>gb|BT015870.1| Arabidopsis thaliana At4g38970 mRNA, complete cds
          Length = 1197

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 253  tttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtactttccgag 312
            |||||||||||||||||| || |||||  ||| ||| || || | |||||| ||||||||
Sbjct: 1182 tttgacgaacatgccctccttagcctcttcggactcaccctcaccggtgtattttccgag 1123

               
Query: 313  ctg 315
            |||
Sbjct: 1122 ctg 1120
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>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90
          Length = 198987

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                         
Query: 253   tttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtactttccgag 312
             |||||||||||||||||| || |||||  ||| ||| || || | |||||| ||||||||
Sbjct: 77884 tttgacgaacatgccctccttagcctcttcggactcaccctcaccggtgtattttccgag 77943

                
Query: 313   ctg 315
             |||
Sbjct: 77944 ctg 77946
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>emb|AL035679.1|ATF19H22 Arabidopsis thaliana DNA chromosome 4, BAC clone F19H22 (ESSA project)
          Length = 100469

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                         
Query: 253   tttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtactttccgag 312
             |||||||||||||||||| || |||||  ||| ||| || || | |||||| ||||||||
Sbjct: 39874 tttgacgaacatgccctccttagcctcttcggactcaccctcaccggtgtattttccgag 39933

                
Query: 313   ctg 315
             |||
Sbjct: 39934 ctg 39936
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>gb|AF428455.1|AF428455 Arabidopsis thaliana AT4g38970/F19H22_70 mRNA, complete cds
          Length = 1419

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 253  tttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtactttccgag 312
            |||||||||||||||||| || |||||  ||| ||| || || | |||||| ||||||||
Sbjct: 1257 tttgacgaacatgccctccttagcctcttcggactcaccctcaccggtgtattttccgag 1198

               
Query: 313  ctg 315
            |||
Sbjct: 1197 ctg 1195
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>emb|BX828075.1|CNS0A3X4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH4ZH02 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1370

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 253  tttgacgaacatgccctctttggcctcggcggcctcnccgtcgctggtgtactttccgag 312
            |||||||||||||||||| || |||||  ||| ||| || || | |||||| ||||||||
Sbjct: 1252 tttgacgaacatgccctccttagcctcttcggactcaccctcaccggtgtattttccgag 1193

               
Query: 313  ctg 315
            |||
Sbjct: 1192 ctg 1190
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>ref|XM_773322.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_291_48061_46229)
            partial mRNA
          Length = 1833

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 169  gatcgatatatgatgcatctttctg 193
            ||||||||||||||||| |||||||
Sbjct: 1414 gatcgatatatgatgcaactttctg 1390
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>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 121    gatctagaaaatacagtaatc 141
              |||||||||||||||||||||
Sbjct: 514505 gatctagaaaatacagtaatc 514485
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>gb|AC009039.7| Homo sapiens chromosome 16 clone RP11-152O14, complete sequence
          Length = 163228

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 122   atctagaaaatacagtaatcatcat 146
             ||||| |||||||||||||||||||
Sbjct: 76537 atctacaaaatacagtaatcatcat 76513


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,161,872
Number of Sequences: 3902068
Number of extensions: 2161872
Number of successful extensions: 37126
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37028
Number of HSP's gapped (non-prelim): 98
length of query: 320
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 298
effective length of database: 17,147,199,772
effective search space: 5109865532056
effective search space used: 5109865532056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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