ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RBBP4_BRARE (Q6P3H7) Histone-binding protein RBBP4 (Retinoblasto... 29 5.2

>RBBP4_BRARE (Q6P3H7) Histone-binding protein RBBP4 (Retinoblastoma-binding|
           protein 4) (RBBP-4)
          Length = 423

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 20/77 (25%), Positives = 29/77 (37%)
 Frame = +3

Query: 57  TICSWDRDTYPSXWXVLXXXXXXXXXXXXVVNCLGHGLMEQCLVPVVVHDPELDAGDGLE 236
           TIC WD  T P    ++            V +   H L+ + L   V  D +L   D   
Sbjct: 200 TICLWDISTVPKEGKIVDAKTIFTGHTAVVEDVSWH-LLHESLFGSVADDQKLMIWDTRS 258

Query: 237 QHLRGVSVGVDGHDADL 287
            +    S  VD H A++
Sbjct: 259 NNTSKPSHAVDAHTAEV 275


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,292,226
Number of Sequences: 219361
Number of extensions: 593827
Number of successful extensions: 1480
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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