Clone Name | rbah61e04 |
---|---|
Clone Library Name | barley_pub |
>GFRA2_CHICK (O13157) GDNF family receptor alpha-2 precursor (GFR-alpha-2)| (Neurturin receptor alpha) (NTNR-alpha) (NRTNR-alpha) (GDNF receptor beta) (GDNFR-beta) Length = 465 Score = 31.2 bits (69), Expect = 0.61 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -2 Query: 277 PLGKSLQSWRRPVLLLRPNKLC 212 P G+ LQ WR PV +R NKLC Sbjct: 26 PPGQDLQGWRVPVDCIRANKLC 47
>SYC_XANAC (Q8PK23) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 476 Score = 29.3 bits (64), Expect = 2.3 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -3 Query: 330 VAQESCSPGRGTRFHAWCHSGSPSRAGAAQSYSCGPI 220 +AQ C+ G T W H+G + +GA S S G I Sbjct: 241 IAQSECAHGGATFARFWLHNGMLNFSGAKMSKSLGNI 277
>SYC_XYLFT (Q87EL7) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 467 Score = 29.3 bits (64), Expect = 2.3 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -3 Query: 330 VAQESCSPGRGTRFHAWCHSGSPSRAGAAQSYSCGPI 220 +AQ C+ G T W H+G + GA S S G I Sbjct: 239 IAQSRCAHGSSTFARVWMHNGMLNFEGAKMSKSLGNI 275
>SYC_XYLFA (Q9PEN3) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 467 Score = 29.3 bits (64), Expect = 2.3 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -3 Query: 330 VAQESCSPGRGTRFHAWCHSGSPSRAGAAQSYSCGPI 220 +AQ C+ G T W H+G + GA S S G I Sbjct: 239 IAQSRCAHGSSTFARVWMHNGMLNFEGAKMSKSLGNI 275
>PIGF_HUMAN (Q07326) Phosphatidylinositol-glycan biosynthesis, class F protein| (PIG-F) (GPI11 homolog) Length = 219 Score = 28.9 bits (63), Expect = 3.0 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%) Frame = -2 Query: 316 LLTRTRNTVPCLVPLGKSLQSW-----RRPVLLLRPNKLCLSVFLFFFGAF 179 ++ T TVPCL LG +L++W R V + N L ++ F GA+ Sbjct: 117 VILSTFTTVPCLCLLGPNLKAWLRVFSRNGVTSIWENSLQITTISSFVGAW 167
>IM23_SCHJA (P27591) 23 kDa integral membrane protein (Sj23)| Length = 218 Score = 28.9 bits (63), Expect = 3.0 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = -2 Query: 283 LVPLGKSLQSWRRPVLLLRPNKLCLSVFLFFFGAFTIFSLNSYILSVHLVWQFKIISIIL 104 + LG ++ + V +L L S+ L GA+ + Y ++H VWQ I+II+ Sbjct: 1 MATLGTGMRCLKSCVFILNIICLLCSLVLIGAGAYVEVKFSQYEANLHKVWQAAPIAIIV 60
>Y267_AQUAE (O66624) Hypothetical protein aq_267| Length = 378 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = -2 Query: 220 KLCLSVFLFFFGAFTIFSLNSYILSVHLVWQFKI 119 +L L + L+ FGAFTIF ++L +VW +K+ Sbjct: 275 RLHLDLILYGFGAFTIFGGMLHLLP-RIVWNWKV 307
>ALG10_ASHGO (Q75AQ8) Alpha-1,2 glucosyltransferase ALG10 (EC 2.4.1.-)| (Alpha-2-glucosyltransferase ALG10) (Dolichyl-phosphoglucose-dependent glucosyltransferase ALG10) (Asparagine-linked glycosylation protein 10) Length = 509 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/52 (26%), Positives = 25/52 (48%) Frame = -2 Query: 262 LQSWRRPVLLLRPNKLCLSVFLFFFGAFTIFSLNSYILSVHLVWQFKIISII 107 +++W VL N +FL + G+ T+ +S++ HLV F + I Sbjct: 244 IENWNSLVLPYAVNFALFLIFLLYNGSVTLGDKSSHVAGFHLVQMFYCLLFI 295
>Y086_MYCPN (P75607) Hypothetical protein MPN086 (R02_orf105)| Length = 105 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = -2 Query: 214 CLSVFLFFFGAFTIFSLNSYILSVHLVWQFKIISIILGRA 95 C+++ LF F ++ F N L W F +++I+ G A Sbjct: 43 CIAIDLFRFDLYSQFFFNHLSTLSALAWTFFVLAILFGAA 82
>RIR2_SHV21 (Q01038) Ribonucleoside-diphosphate reductase small chain (EC| 1.17.4.1) (Ribonucleotide reductase small subunit) Length = 305 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +3 Query: 294 VFLVLVSNFLAQHFLKINLFHGLGILNSVCL 386 +FL++ F F I LF GI+N +CL Sbjct: 152 LFLLVEGIFFISSFFSIGLFRVRGIMNGICL 182
>PIGF_MOUSE (O09101) Phosphatidylinositol-glycan biosynthesis, class F protein| (PIG-F) Length = 219 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -2 Query: 304 TRNTVPCLVPLGKSLQSW-----RRPVLLLRPNKLCLSVFLFFFGAF 179 T TVPCL LG +L++W R V + N L ++ F GA+ Sbjct: 121 TFTTVPCLCLLGPNLKAWLRVFSRNGVTSIWENSLQITTISSFTGAW 167
>SYC_NEIMB (Q9JXE6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 473 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +2 Query: 242 WAAPALEGLPEWHQAWNRVPRPGEQLSCATLSQN 343 W A A G P W W RPG + C+ +S+N Sbjct: 184 WKA-AKAGEPAWESPWGN-GRPGWHIECSAMSEN 215
>SYC_AZOBR (O07045) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 448 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = +2 Query: 251 PALEGLPEWHQAWNRVPRPGEQLSCATLSQ 340 P+ +G P W W R RPG + C+ +++ Sbjct: 183 PSTDGQPGWDSPWGR-GRPGWHIECSAMAK 211
>SYC_NEIMA (Q9JWJ3) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 699 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +2 Query: 242 WAAPALEGLPEWHQAWNRVPRPGEQLSCATLSQN 343 W A A G P W W RPG + C+ +S+N Sbjct: 410 WKA-AKAGEPAWESPWGN-GRPGWHIECSAMSEN 441
>ISPZ_BUCAI (P57363) Probable intracellular septation protein| Length = 177 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = -2 Query: 223 NKLCLSVFL--FFFGAFTIFSLNSYILSVHLVWQFKIISII 107 +K+ L FL FFFG+ TIF NS + W+ II II Sbjct: 48 DKISLFSFLSVFFFGSLTIFFHNSQFIK----WKITIIYII 84
>ZFP95_MOUSE (Q9Z1D8) Zinc finger protein 95 (Zfp-95)| Length = 819 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = -3 Query: 315 CSPGRGTRFHAWCHSGSPSRAGAAQSYSCGPISFAYL 205 C G G R H H SR + Q + CG I F Y+ Sbjct: 629 CGKGFGRRSHLAGHLRLHSRDKSHQCHECGEIFFQYV 665
>SYC_XANCP (Q8P8J0) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 457 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -3 Query: 330 VAQESCSPGRGTRFHAWCHSGSPSRAGAAQSYSCGPI 220 +AQ C+ G W H+G + +GA S S G I Sbjct: 241 IAQSECAHGGAVFARFWLHNGMLNFSGAKMSKSLGNI 277
>ADCY4_HUMAN (Q8NFM4) Adenylate cyclase type 4 (EC 4.6.1.1) (Adenylate cyclase| type IV) (ATP pyrophosphate-lyase 4) (Adenylyl cyclase 4) Length = 1077 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = -2 Query: 247 RPVLLLRPNKL-CLSVFLFFFGAFTIFSLNSYILSVHLVWQFKI 119 RP +L P + +S F+FFF + N Y + +W+ K+ Sbjct: 781 RPGVLKEPKLMGAISFFIFFFTLLVLARQNEYYCRLDFLWKKKL 824 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,589,901 Number of Sequences: 219361 Number of extensions: 964688 Number of successful extensions: 3154 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3154 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)