Clone Name | rbah61e04 |
---|---|
Clone Library Name | barley_pub |
>gb|AY596527.1| Saccharum officinarum clone SCCCLB1004G11, complete sequence Length = 1189 Score = 97.6 bits (49), Expect = 3e-17 Identities = 97/113 (85%) Strand = Plus / Plus Query: 298 tcctcgtcctggtgagcaactttcttgcgcaacactttctcaaaatcaatcttttccacg 357 ||||| ||||||||||||| |||||||||||||| |||||||| ||||||||||| | Sbjct: 325 tcctcatcctggtgagcaaacttcttgcgcaacaccttctcaaactcaatcttttcaaga 384 Query: 358 ggcttggcattctcaacagcgtgtgccttggctaagttggaatagttggcagc 410 ||||||||||||||| |||| || ||||||| | |||||||||||||||| Sbjct: 385 ggcttggcattctcatcagcatgcgccttggacagactggaatagttggcagc 437 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 69 gaagtgcatggtcagctttagaacattgctcgacccaaaattattg 114 ||||||||||| |||||||| ||||| ||||||||||| ||||||| Sbjct: 89 gaagtgcatggccagctttataacatcgctcgacccaagattattg 134
>ref|NM_187710.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 774 Score = 95.6 bits (48), Expect = 1e-16 Identities = 117/140 (83%) Strand = Plus / Minus Query: 247 ggcgccagctctggagggacttcccgagtggcaccaagcatggaaccgtgttcctcgtcc 306 |||| |||||| |||| || |||||||| ||||||| ||| ||| |||||||||| ||| Sbjct: 755 ggcgtcagctccggagtaacctcccgagtagcaccaatcattgaatcgtgttcctcatcc 696 Query: 307 tggtgagcaactttcttgcgcaacactttctcaaaatcaatcttttccacgggcttggca 366 ||||||||| |||||||| |||| |||||||| ||| ||||||| || ||||||||| Sbjct: 695 tggtgagcagacttcttgcggaacagcttctcaaattcagtcttttcaacaggcttggca 636 Query: 367 ttctcaacagcgtgtgcctt 386 |||||| |||| || ||||| Sbjct: 635 ttctcagcagcatgggcctt 616
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 95.6 bits (48), Expect = 1e-16 Identities = 117/140 (83%) Strand = Plus / Minus Query: 247 ggcgccagctctggagggacttcccgagtggcaccaagcatggaaccgtgttcctcgtcc 306 |||| |||||| |||| || |||||||| ||||||| ||| ||| |||||||||| ||| Sbjct: 10121590 ggcgtcagctccggagtaacctcccgagtagcaccaatcattgaatcgtgttcctcatcc 10121531 Query: 307 tggtgagcaactttcttgcgcaacactttctcaaaatcaatcttttccacgggcttggca 366 ||||||||| |||||||| |||| |||||||| ||| ||||||| || ||||||||| Sbjct: 10121530 tggtgagcagacttcttgcggaacagcttctcaaattcagtcttttcaacaggcttggca 10121471 Query: 367 ttctcaacagcgtgtgcctt 386 |||||| |||| || ||||| Sbjct: 10121470 ttctcagcagcatgggcctt 10121451 Score = 77.8 bits (39), Expect = 3e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 48 aacatatggaatacagaaactgaagtgcatggtcagctttagaacattgctcgacccaaa 107 ||||||||||||||||||| ||||| ||||| ||||||| | ||| ||||||||||||| Sbjct: 10121795 aacatatggaatacagaaaacgaagtacatggccagcttttgcacaatgctcgacccaaa 10121736 Query: 108 attattg 114 ||||||| Sbjct: 10121735 attattg 10121729 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ctttctcaaaatcaatcttt 351 |||||||||||||||||||| Sbjct: 9481999 ctttctcaaaatcaatcttt 9482018
>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0581F09 Length = 154248 Score = 95.6 bits (48), Expect = 1e-16 Identities = 117/140 (83%) Strand = Plus / Minus Query: 247 ggcgccagctctggagggacttcccgagtggcaccaagcatggaaccgtgttcctcgtcc 306 |||| |||||| |||| || |||||||| ||||||| ||| ||| |||||||||| ||| Sbjct: 69059 ggcgtcagctccggagtaacctcccgagtagcaccaatcattgaatcgtgttcctcatcc 69000 Query: 307 tggtgagcaactttcttgcgcaacactttctcaaaatcaatcttttccacgggcttggca 366 ||||||||| |||||||| |||| |||||||| ||| ||||||| || ||||||||| Sbjct: 68999 tggtgagcagacttcttgcggaacagcttctcaaattcagtcttttcaacaggcttggca 68940 Query: 367 ttctcaacagcgtgtgcctt 386 |||||| |||| || ||||| Sbjct: 68939 ttctcagcagcatgggcctt 68920 Score = 77.8 bits (39), Expect = 3e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 48 aacatatggaatacagaaactgaagtgcatggtcagctttagaacattgctcgacccaaa 107 ||||||||||||||||||| ||||| ||||| ||||||| | ||| ||||||||||||| Sbjct: 69264 aacatatggaatacagaaaacgaagtacatggccagcttttgcacaatgctcgacccaaa 69205 Query: 108 attattg 114 ||||||| Sbjct: 69204 attattg 69198
>dbj|AK122051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114G12, full insert sequence Length = 1036 Score = 95.6 bits (48), Expect = 1e-16 Identities = 117/140 (83%) Strand = Plus / Minus Query: 247 ggcgccagctctggagggacttcccgagtggcaccaagcatggaaccgtgttcctcgtcc 306 |||| |||||| |||| || |||||||| ||||||| ||| ||| |||||||||| ||| Sbjct: 872 ggcgtcagctccggagtaacctcccgagtagcaccaatcattgaatcgtgttcctcatcc 813 Query: 307 tggtgagcaactttcttgcgcaacactttctcaaaatcaatcttttccacgggcttggca 366 ||||||||| |||||||| |||| |||||||| ||| ||||||| || ||||||||| Sbjct: 812 tggtgagcagacttcttgcggaacagcttctcaaattcagtcttttcaacaggcttggca 753 Query: 367 ttctcaacagcgtgtgcctt 386 |||||| |||| || ||||| Sbjct: 752 ttctcagcagcatgggcctt 733 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 tgctcgacccaaaattattg 114 |||||||||||||||||||| Sbjct: 1030 tgctcgacccaaaattattg 1011
>dbj|AK104205.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-F03, full insert sequence Length = 1086 Score = 95.6 bits (48), Expect = 1e-16 Identities = 117/140 (83%) Strand = Plus / Minus Query: 247 ggcgccagctctggagggacttcccgagtggcaccaagcatggaaccgtgttcctcgtcc 306 |||| |||||| |||| || |||||||| ||||||| ||| ||| |||||||||| ||| Sbjct: 922 ggcgtcagctccggagtaacctcccgagtagcaccaatcattgaatcgtgttcctcatcc 863 Query: 307 tggtgagcaactttcttgcgcaacactttctcaaaatcaatcttttccacgggcttggca 366 ||||||||| |||||||| |||| |||||||| ||| ||||||| || ||||||||| Sbjct: 862 tggtgagcagacttcttgcggaacagcttctcaaattcagtcttttcaacaggcttggca 803 Query: 367 ttctcaacagcgtgtgcctt 386 |||||| |||| || ||||| Sbjct: 802 ttctcagcagcatgggcctt 783 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 tgctcgacccaaaattattg 114 |||||||||||||||||||| Sbjct: 1080 tgctcgacccaaaattattg 1061
>dbj|AK071713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109L19, full insert sequence Length = 1156 Score = 95.6 bits (48), Expect = 1e-16 Identities = 117/140 (83%) Strand = Plus / Minus Query: 247 ggcgccagctctggagggacttcccgagtggcaccaagcatggaaccgtgttcctcgtcc 306 |||| |||||| |||| || |||||||| ||||||| ||| ||| |||||||||| ||| Sbjct: 914 ggcgtcagctccggagtaacctcccgagtagcaccaatcattgaatcgtgttcctcatcc 855 Query: 307 tggtgagcaactttcttgcgcaacactttctcaaaatcaatcttttccacgggcttggca 366 ||||||||| |||||||| |||| |||||||| ||| ||||||| || ||||||||| Sbjct: 854 tggtgagcagacttcttgcggaacagcttctcaaattcagtcttttcaacaggcttggca 795 Query: 367 ttctcaacagcgtgtgcctt 386 |||||| |||| || ||||| Sbjct: 794 ttctcagcagcatgggcctt 775 Score = 77.8 bits (39), Expect = 3e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 48 aacatatggaatacagaaactgaagtgcatggtcagctttagaacattgctcgacccaaa 107 ||||||||||||||||||| ||||| ||||| ||||||| | ||| ||||||||||||| Sbjct: 1119 aacatatggaatacagaaaacgaagtacatggccagcttttgcacaatgctcgacccaaa 1060 Query: 108 attattg 114 ||||||| Sbjct: 1059 attattg 1053
>dbj|AK060908.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F08, full insert sequence Length = 1086 Score = 95.6 bits (48), Expect = 1e-16 Identities = 117/140 (83%) Strand = Plus / Minus Query: 247 ggcgccagctctggagggacttcccgagtggcaccaagcatggaaccgtgttcctcgtcc 306 |||| |||||| |||| || |||||||| ||||||| ||| ||| |||||||||| ||| Sbjct: 922 ggcgtcagctccggagtaacctcccgagtagcaccaatcattgaatcgtgttcctcatcc 863 Query: 307 tggtgagcaactttcttgcgcaacactttctcaaaatcaatcttttccacgggcttggca 366 ||||||||| |||||||| |||| |||||||| ||| ||||||| || ||||||||| Sbjct: 862 tggtgagcagacttcttgcggaacagcttctcaaattcagtcttttcaacaggcttggca 803 Query: 367 ttctcaacagcgtgtgcctt 386 |||||| |||| || ||||| Sbjct: 802 ttctcagcagcatgggcctt 783 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 tgctcgacccaaaattattg 114 |||||||||||||||||||| Sbjct: 1080 tgctcgacccaaaattattg 1061
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004B13 Length = 142268 Score = 95.6 bits (48), Expect = 1e-16 Identities = 117/140 (83%) Strand = Plus / Minus Query: 247 ggcgccagctctggagggacttcccgagtggcaccaagcatggaaccgtgttcctcgtcc 306 |||| |||||| |||| || |||||||| ||||||| ||| ||| |||||||||| ||| Sbjct: 46189 ggcgtcagctccggagtaacctcccgagtagcaccaatcattgaatcgtgttcctcatcc 46130 Query: 307 tggtgagcaactttcttgcgcaacactttctcaaaatcaatcttttccacgggcttggca 366 ||||||||| |||||||| |||| |||||||| ||| ||||||| || ||||||||| Sbjct: 46129 tggtgagcagacttcttgcggaacagcttctcaaattcagtcttttcaacaggcttggca 46070 Query: 367 ttctcaacagcgtgtgcctt 386 |||||| |||| || ||||| Sbjct: 46069 ttctcagcagcatgggcctt 46050 Score = 77.8 bits (39), Expect = 3e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 48 aacatatggaatacagaaactgaagtgcatggtcagctttagaacattgctcgacccaaa 107 ||||||||||||||||||| ||||| ||||| ||||||| | ||| ||||||||||||| Sbjct: 46394 aacatatggaatacagaaaacgaagtacatggccagcttttgcacaatgctcgacccaaa 46335 Query: 108 attattg 114 ||||||| Sbjct: 46334 attattg 46328
>gb|AY105930.1| Zea mays PCO135569 mRNA sequence Length = 1279 Score = 77.8 bits (39), Expect = 3e-11 Identities = 90/107 (84%) Strand = Plus / Minus Query: 304 tcctggtgagcaactttcttgcgcaacactttctcaaaatcaatcttttccacgggcttg 363 ||||||||||||| ||||||| |||||| |||||||| ||||||||||| | || ||| Sbjct: 838 tcctggtgagcaaacttcttgcccaacaccttctcaaactcaatcttttcaagaggtttg 779 Query: 364 gcattctcaacagcgtgtgccttggctaagttggaatagttggcagc 410 ||||||||| |||| || |||||| | ||||||||||||||||| Sbjct: 778 gcattctcagcagcatggaccttggacagattggaatagttggcagc 732 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 69 gaagtgcatggtcagctttagaacattgctcgacccaaaattattg 114 ||||||||||| |||||||| ||||| |||||| |||| ||||||| Sbjct: 1071 gaagtgcatggccagctttataacatcgctcgatccaagattattg 1026
>gb|BT017158.1| Zea mays clone EL01N0368A12.c mRNA sequence Length = 1060 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 298 tcctcgtcctggtgagcaactttcttgcgcaacactttctcaaaatcaatcttttccacg 357 ||||| ||||||||||||| |||||||| ||||| |||||||| ||||||||||| | Sbjct: 800 tcctcatcctggtgagcaaacttcttgcgtaacaccttctcaaactcaatcttttcaaga 741 Query: 358 ggcttggcattctc 371 |||||||||||||| Sbjct: 740 ggcttggcattctc 727 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 69 gaagtgcatggtcagctttagaacattgctcgacccaaaattattg 114 ||||||||||| |||||||| ||||| ||||||||||| ||||||| Sbjct: 1035 gaagtgcatggccagctttataacatcgctcgacccaagattattg 990
>gb|BC049182.1| Mus musculus hairless, mRNA (cDNA clone MGC:54518 IMAGE:6468299), complete cds Length = 5599 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 281 caagcatggaaccgtgttcctcgtcctgg 309 |||||| |||||| ||||||||||||||| Sbjct: 4372 caagcagggaaccttgttcctcgtcctgg 4400
>gb|BC040241.1| Homo sapiens WD repeat domain 41, mRNA (cDNA clone MGC:5405 IMAGE:3447269), complete cds Length = 2356 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 aattattgaaataatcttaaactgc 131 |||| |||||||||||||||||||| Sbjct: 1418 aatttttgaaataatcttaaactgc 1394
>gb|AC127369.4| Mus musculus BAC clone RP23-26A15 from 8, complete sequence Length = 211411 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 7 acaatactggtaaatttattctgtt 31 |||| |||||||||||||||||||| Sbjct: 160754 acaacactggtaaatttattctgtt 160730
>gb|AC122268.5| Mus musculus BAC clone RP23-216B15 from 14, complete sequence Length = 207136 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 281 caagcatggaaccgtgttcctcgtcctgg 309 |||||| |||||| ||||||||||||||| Sbjct: 196756 caagcagggaaccttgttcctcgtcctgg 196784
>ref|NM_021877.2| Mus musculus hairless (Hr), mRNA Length = 5599 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 281 caagcatggaaccgtgttcctcgtcctgg 309 |||||| |||||| ||||||||||||||| Sbjct: 4372 caagcagggaaccttgttcctcgtcctgg 4400
>emb|AL834138.1|HSM805349 Homo sapiens mRNA; cDNA DKFZp434J2114 (from clone DKFZp434J2114) Length = 3327 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 aattattgaaataatcttaaactgc 131 |||| |||||||||||||||||||| Sbjct: 2347 aatttttgaaataatcttaaactgc 2323
>emb|CR625903.1| full-length cDNA clone CS0DM014YF08 of Fetal liver of Homo sapiens (human) Length = 1643 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 aattattgaaataatcttaaactgc 131 |||| |||||||||||||||||||| Sbjct: 1614 aatttttgaaataatcttaaactgc 1590
>emb|CR616409.1| full-length cDNA clone CS0DL008YJ03 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1654 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 aattattgaaataatcttaaactgc 131 |||| |||||||||||||||||||| Sbjct: 1593 aatttttgaaataatcttaaactgc 1569
>dbj|AK023977.1| Homo sapiens cDNA FLJ13915 fis, clone Y79AA1000328, weakly similar to SEL-10 PROTEIN Length = 2301 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 aattattgaaataatcttaaactgc 131 |||| |||||||||||||||||||| Sbjct: 1368 aatttttgaaataatcttaaactgc 1344
>dbj|AK021855.1| Homo sapiens cDNA FLJ11793 fis, clone HEMBA1006130, weakly similar to SEL-10 PROTEIN Length = 1941 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 aattattgaaataatcttaaactgc 131 |||| |||||||||||||||||||| Sbjct: 1452 aatttttgaaataatcttaaactgc 1428
>dbj|AK001766.1| Homo sapiens cDNA FLJ10904 fis, clone OVARC1000013, weakly similar to APOPTOTIC PROTEASE ACTIVATING FACTOR 1 Length = 2536 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 aattattgaaataatcttaaactgc 131 |||| |||||||||||||||||||| Sbjct: 1612 aatttttgaaataatcttaaactgc 1588
>ref|NM_018268.2| Homo sapiens WD repeat domain 41 (WDR41), mRNA Length = 2608 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 aattattgaaataatcttaaactgc 131 |||| |||||||||||||||||||| Sbjct: 1633 aatttttgaaataatcttaaactgc 1609
>gb|AC022422.5| Homo sapiens chromosome 5 clone CTD-2199L4, complete sequence Length = 245697 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 107 aattattgaaataatcttaaactgc 131 |||| |||||||||||||||||||| Sbjct: 179495 aatttttgaaataatcttaaactgc 179519
>dbj|AK076280.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4632409G21 product:hairless, full insert sequence Length = 2969 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 281 caagcatggaaccgtgttcctcgtcctgg 309 |||||| |||||| ||||||||||||||| Sbjct: 1857 caagcagggaaccttgttcctcgtcctgg 1885
>gb|DQ000563.1| Synthetic construct clone PSF:109395 DKFZp434J2114 gene, complete cds Length = 690 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 aattattgaaataatcttaaactgc 131 |||| |||||||||||||||||||| Sbjct: 656 aatttttgaaataatcttaaactgc 632
>gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosome 14, complete sequence Length = 206798 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 281 caagcatggaaccgtgttcctcgtcctgg 309 |||||| |||||| ||||||||||||||| Sbjct: 150789 caagcagggaaccttgttcctcgtcctgg 150761
>gb|AC010234.5|AC010234 Homo sapiens chromosome 5 clone CTC-337B15, complete sequence Length = 143553 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 aattattgaaataatcttaaactgc 131 |||| |||||||||||||||||||| Sbjct: 124365 aatttttgaaataatcttaaactgc 124341
>gb|AF115511.1| Homo sapiens MSTP048 (MST048) mRNA, complete cds Length = 2388 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 aattattgaaataatcttaaactgc 131 |||| |||||||||||||||||||| Sbjct: 1414 aatttttgaaataatcttaaactgc 1390
>gb|BC001807.1| Homo sapiens cDNA clone IMAGE:3354734, containing frame-shift errors Length = 1713 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 aattattgaaataatcttaaactgc 131 |||| |||||||||||||||||||| Sbjct: 1620 aatttttgaaataatcttaaactgc 1596
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ctggtaaatttattctgttt 32 |||||||||||||||||||| Sbjct: 1099092 ctggtaaatttattctgttt 1099073
>gb|AC150385.2| Branchiostoma floridae clone CH302-101G3, complete sequence Length = 121661 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 gcgcacaatactggtaaatt 22 |||||||||||||||||||| Sbjct: 82512 gcgcacaatactggtaaatt 82493
>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006B22, complete sequence Length = 166052 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ctttctcaaaatcaatcttt 351 |||||||||||||||||||| Sbjct: 65184 ctttctcaaaatcaatcttt 65165
>gb|AC139578.4| Mus musculus BAC clone RP23-188P12 from chromosome 18, complete sequence Length = 179415 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 agaggaacacagataagcaaagct 219 ||||||| |||||||||||||||| Sbjct: 155532 agaggaagacagataagcaaagct 155555
>gb|AC111059.9| Mus musculus chromosome 15, clone RP24-495D8, complete sequence Length = 124519 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 aggcaccaaagaagaagagg 200 |||||||||||||||||||| Sbjct: 97291 aggcaccaaagaagaagagg 97310
>gb|AC140209.2| Mus musculus BAC clone RP24-472D23 from chromosome 15, complete sequence Length = 175802 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 aggcaccaaagaagaagagg 200 |||||||||||||||||||| Sbjct: 107877 aggcaccaaagaagaagagg 107858
>gb|AC135242.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0070D14, complete sequence Length = 174780 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ctttctcaaaatcaatcttt 351 |||||||||||||||||||| Sbjct: 75891 ctttctcaaaatcaatcttt 75910
>ref|XM_797853.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510153.10) partial mRNA Length = 1638 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tcctggtgagcaactttctt 323 |||||||||||||||||||| Sbjct: 833 tcctggtgagcaactttctt 814
>ref|XM_760984.1| Theileria parva strain Muguga chromosome 1 hypothetical protein (TP01_0558) partial mRNA Length = 1419 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 tctcaaaatcaatcttttcc 354 |||||||||||||||||||| Sbjct: 817 tctcaaaatcaatcttttcc 836
>emb|AL356275.20| Human DNA sequence from clone RP11-328D5 on chromosome 1 Contains the 5' end of a novel gene, a novel gene, the CD34 gene for CD34 antigen and the 3' end of the PLXNA2 gene for plexin A2, complete sequence Length = 198906 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 accaaagaagaagaggaaca 204 |||||||||||||||||||| Sbjct: 156914 accaaagaagaagaggaaca 156895
>emb|AL138726.12| Human DNA sequence from clone RP1-139G21 on chromosome 6 Contains (part of) the SLC17A1, SLC17A2 and SLC17A3 genes for the sodium phosphate solute carrier family 17 members 1, 2 and 3 and a H2A (histone 2A) pseudogene, complete sequence Length = 136646 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 cccaaaattattgaaataat 121 |||||||||||||||||||| Sbjct: 120015 cccaaaattattgaaataat 120034
>emb|AL023693.25|HS32B1 Human DNA sequence from clone RP1-32B1 on chromosome 6q22.33-23.3 Contains the MYB gene for v-myb myeloblastosis viral oncogene homolog (avian), 2 novel genes, the 3' end of a novel protein and a CpG island, complete sequence Length = 188287 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 cccaaaattattgaaataat 121 |||||||||||||||||||| Sbjct: 15312 cccaaaattattgaaataat 15331
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 161 attcaagctgaagatggtgaaggcaccaaagaagaa 196 |||||||||||| |||||||| |||||||||||| Sbjct: 4296893 attcaagctgaacatggtgaaaaaaccaaagaagaa 4296858
>emb|AL604031.10| Mouse DNA sequence from clone RP23-24O5 on chromosome 11 Contains a ribosomal protein L13 (Rpl13) pseudogene, a novel gene and two CpG islands, complete sequence Length = 215675 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 ccaaaattattgaaataatc 122 |||||||||||||||||||| Sbjct: 46098 ccaaaattattgaaataatc 46117
>emb|AL606626.3|OSJN00050 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088K19, complete sequence Length = 156002 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aaagaagaagaggaacacag 207 |||||||||||||||||||| Sbjct: 52463 aaagaagaagaggaacacag 52444
>emb|BX908770.13| Zebrafish DNA sequence from clone CH211-198A12 in linkage group 13, complete sequence Length = 126240 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 gcaccaaagaagaagaggaacaca 206 |||||||||||||||| ||||||| Sbjct: 87986 gcaccaaagaagaagaagaacaca 88009
>emb|BX927129.10| Zebrafish DNA sequence from clone DKEY-158N21 in linkage group 13, complete sequence Length = 154491 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 gcaccaaagaagaagaggaacaca 206 |||||||||||||||| ||||||| Sbjct: 36700 gcaccaaagaagaagaagaacaca 36723
>emb|BX928754.9| Zebrafish DNA sequence from clone DKEY-169I10 in linkage group 13, complete sequence Length = 263849 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 gcaccaaagaagaagaggaacaca 206 |||||||||||||||| ||||||| Sbjct: 215283 gcaccaaagaagaagaagaacaca 215306
>gb|AC120797.9| Mus musculus chromosome 18, clone RP24-81D18, complete sequence Length = 210631 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 agaggaacacagataagcaaagct 219 ||||||| |||||||||||||||| Sbjct: 80365 agaggaagacagataagcaaagct 80388
>gb|AC117445.12| Homo sapiens 3 BAC RP11-278A4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 31868 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cccaaaattattgaaataat 121 |||||||||||||||||||| Sbjct: 5004 cccaaaattattgaaataat 4985
>dbj|AK097185.1| Homo sapiens cDNA FLJ39866 fis, clone SPLEN2015276 Length = 2878 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 aattcaagctgaagatggtgaagg 183 ||||||||| |||||||||||||| Sbjct: 1756 aattcaagcagaagatggtgaagg 1779
>dbj|AK093933.1| Homo sapiens cDNA FLJ36614 fis, clone TRACH2016380 Length = 2105 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 aattcaagctgaagatggtgaagg 183 ||||||||| |||||||||||||| Sbjct: 983 aattcaagcagaagatggtgaagg 1006
>gb|AC025156.21| Homo sapiens 3 BAC RP11-494C5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167906 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 aggcaccaaagaagaagagg 200 |||||||||||||||||||| Sbjct: 80462 aggcaccaaagaagaagagg 80481
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aaagaagaagaggaacacag 207 |||||||||||||||||||| Sbjct: 21530374 aaagaagaagaggaacacag 21530355
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ctttctcaaaatcaatcttt 351 |||||||||||||||||||| Sbjct: 15082927 ctttctcaaaatcaatcttt 15082946
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 acaatactggtaaatttattctgt 30 ||||||||||||||||||| |||| Sbjct: 225691 acaatactggtaaatttatgctgt 225668
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ctttctcaaaatcaatcttt 351 |||||||||||||||||||| Sbjct: 14729770 ctttctcaaaatcaatcttt 14729751
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 ggcaccaaagaagaagagga 201 |||||||||||||||||||| Sbjct: 34509017 ggcaccaaagaagaagagga 34508998
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0424A08 Length = 151294 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ctttctcaaaatcaatcttt 351 |||||||||||||||||||| Sbjct: 15428 ctttctcaaaatcaatcttt 15447
>dbj|AP006058.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0066B16 Length = 190143 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 acaatactggtaaatttattctgt 30 ||||||||||||||||||| |||| Sbjct: 121189 acaatactggtaaatttatgctgt 121166
>dbj|AP004064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1520_C09 Length = 145553 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 ggcaccaaagaagaagagga 201 |||||||||||||||||||| Sbjct: 19957 ggcaccaaagaagaagagga 19938
>emb|AL138996.4|CNS01DX1 Human chromosome 14 DNA sequence BAC R-902B17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 184260 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 aattcaagctgaagatggtgaagg 183 ||||||||| |||||||||||||| Sbjct: 23577 aattcaagcagaagatggtgaagg 23600
>emb|AL935163.7| Zebrafish DNA sequence from clone CH211-206K20, complete sequence Length = 158350 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 caaaattattgaaataatct 123 |||||||||||||||||||| Sbjct: 132636 caaaattattgaaataatct 132655
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ctttctcaaaatcaatcttt 351 |||||||||||||||||||| Sbjct: 15164625 ctttctcaaaatcaatcttt 15164644
>emb|AL035091.2|HS88L2 Human DNA sequence from clone XX-D88L2 on chromosome 1q32.2-32.3, complete sequence Length = 160771 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 accaaagaagaagaggaaca 204 |||||||||||||||||||| Sbjct: 136634 accaaagaagaagaggaaca 136653 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,531,166 Number of Sequences: 3902068 Number of extensions: 4531166 Number of successful extensions: 109438 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109029 Number of HSP's gapped (non-prelim): 407 length of query: 410 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 388 effective length of database: 17,147,199,772 effective search space: 6653113511536 effective search space used: 6653113511536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)