ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STTP1_MOUSE (Q91WG4) Stat3-interacting protein (StIP1) 29 2.8
2STTP1_RAT (Q496Z0) Stat3-interacting protein (StIP1) 28 4.8
3STTP1_HUMAN (Q6IA86) Stat3-interacting protein (StIP1) (SHINC-2) 28 6.2

>STTP1_MOUSE (Q91WG4) Stat3-interacting protein (StIP1)|
          Length = 831

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 254 GRXCIIHXCNGTLKRWKAYLGNPRQWS 174
           G   I H  +G L  WK    NPRQW+
Sbjct: 352 GTMIIAHAFHGALHLWKQSTVNPRQWA 378



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>STTP1_RAT (Q496Z0) Stat3-interacting protein (StIP1)|
          Length = 821

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 254 GRXCIIHXCNGTLKRWKAYLGNPRQWS 174
           G   I H  +G +  WK    NPRQW+
Sbjct: 352 GSMIIAHAFHGAMHLWKQSTVNPRQWA 378



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>STTP1_HUMAN (Q6IA86) Stat3-interacting protein (StIP1) (SHINC-2)|
          Length = 826

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 254 GRXCIIHXCNGTLKRWKAYLGNPRQWS 174
           G   I H  +G L  WK    NPR+W+
Sbjct: 353 GSMIIAHAFHGALHLWKQNTVNPREWT 379


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,739,317
Number of Sequences: 219361
Number of extensions: 474252
Number of successful extensions: 1039
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 80,573,946
effective HSP length: 61
effective length of database: 67,192,925
effective search space used: 1612630200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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