Clone Name | rbah61d19 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009112.1| Triticum aestivum clone wl1.pk0008.c2:fis, full insert mRNA sequence Length = 654 Score = 591 bits (298), Expect = e-166 Identities = 369/393 (93%), Gaps = 4/393 (1%) Strand = Plus / Minus Query: 4 tgtattaatcgacgcactcagtgtnngtaca----tttttacaaggaactatacaaacat 59 ||||||||||| ||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct: 615 tgtattaatcggcgcgctcagtgtcagtacaggcatttttacaaggaactatacaaacat 556 Query: 60 gtttgcaaaaacaacatttttactagatcaatgtggttcctacaagctggaccctcgtat 119 |||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 555 gtttgcggaaagaacatttttactagatcaatgtggttcctacaacttggaccctcgtat 496 Query: 120 aaccgccgaaaacatacagggcatgacggggcgacttatgcgacaaacagctccgcctgc 179 || | | ||||||||||| |||| ||| | ||||||||||||| |||||||| |||||| Sbjct: 495 aatcacggaaaacatacaaggcacgacaagtcgacttatgcgacgaacagctctgcctgc 436 Query: 180 ccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcaggagg 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 435 ccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcaggagg 376 Query: 240 ttggcgagcctgtggaggatgtcgatgtgggtgttgatgatctgcgtcgcccgcgagtag 299 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 375 ttggcgagcctgtggaggatatcgatgtgggtgttgatgatctgcgtcgcccgcgagtag 316 Query: 300 gccgtctccacgagttccctgacctcggcatctacgatgtccgccgtggccatcgagtag 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 315 gccgtctccacgagttccctgacctcggcatctacgatgtccgccgtggccatcgagtag 256 Query: 360 tccttctggctcgacatctgctggcccaagaaa 392 ||||||||||||||||||||||||||||||||| Sbjct: 255 tccttctggctcgacatctgctggcccaagaaa 223
>gb|BT009457.1| Triticum aestivum clone wlp1c.pk007.f6:fis, full insert mRNA sequence Length = 1556 Score = 557 bits (281), Expect = e-156 Identities = 372/400 (93%), Gaps = 11/400 (2%) Strand = Plus / Minus Query: 4 tgtattaatcgacgcactcagtgtnngtaca-----tttttacaaggaactatacaaaca 58 ||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||| Sbjct: 1524 tgtattaattgacgcgctcagtgtcagtacaggtattttttacaaggaactatacaaaca 1465 Query: 59 tgtttgcaaaaacaacattttt-actagatcaatgtggttcctacaagctggaccctcgt 117 ||||||| |||| ||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 1464 tgtttgcgaaaagaacattttttactagatcaatgtggttcctacaagttggaccctcgt 1405 Query: 118 ataaccgccgaaaa-catacagggcatg----acggggcgacttatgcgacaaacagctc 172 |||| | || |||| ||||||||||| | || | ||||||||||||| |||||||| Sbjct: 1404 ataatcaccaaaaaacatacagggcacgcacgacaagtcgacttatgcgacgaacagctc 1345 Query: 173 cgcctgcccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgat 232 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1344 tgcctgcccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgat 1285 Query: 233 caggaggttggcgagcctgtggaggatgtcgatgtgggtgttgatgatctgcgtcgcccg 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1284 caggaggttggcgagcctgtggaggatgtcgatgtgggtgttgatgatctgcgtcgcccg 1225 Query: 293 cgagtaggccgtctccacgagttccctgacctcggcatctacgatgtccgccgtggccat 352 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1224 cgagtaggccgtctccacgagttccctgacctcggcgtctacgatgtccgccgtggccat 1165 Query: 353 cgagtagtccttctggctcgacatctgctggcccaagaaa 392 |||||||||||||||||||||||||||||||||||||||| Sbjct: 1164 cgagtagtccttctggctcgacatctgctggcccaagaaa 1125
>gb|BT009148.1| Triticum aestivum clone wl1n.pk0059.g7:fis, full insert mRNA sequence Length = 890 Score = 527 bits (266), Expect = e-147 Identities = 365/397 (91%), Gaps = 15/397 (3%) Strand = Plus / Minus Query: 5 gtattaatcgacgcactcagtgtnngtaca-------tttttacaaggaa-ctatacaaa 56 |||||||||||||| |||||||| ||||| ||||||||||||| ||||||||| Sbjct: 851 gtattaatcgacgcgctcagtgtcagtacaggcattttttttacaaggaaactatacaaa 792 Query: 57 catgtttgcaaaaacaacatttttactagatcaatgtggttcctacaagctggaccctcg 116 ||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 791 catgtttgcgaaaagaacatttttactagatcaatgtggttcctacaagttggaccctcg 732 Query: 117 tataaccgccgaaaa-catacagggcatgacggggcgacttatgcgacaaacagctccgc 175 | ||| | ||||||| |||||||| || | |||||||||||| |||||||| || Sbjct: 731 tgtaatcaccgaaaaacatacagg------cgagttgacttatgcgacgaacagctctgc 678 Query: 176 ctgcccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcag 235 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 677 ctgcccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatgag 618 Query: 236 gaggttggcgagcctgtggaggatgtcgatgtgggtgttgatgatctgcgtcgcccgcga 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 617 gaggttggcgagcctgtggaggatgtcgatgtgggtgttgatgatctgcgtcgcgcgcga 558 Query: 296 gtaggccgtctccacgagttccctgacctcggcatctacgatgtccgccgtggccatcga 355 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 557 gtaggccgtctccacgagttccctgacctcggcgtctacgatgtccgccgtggccatcga 498 Query: 356 gtagtccttctggctcgacatctgctggcccaagaaa 392 ||||||||||||||||||||||||||||||||||||| Sbjct: 497 gtagtccttctggctcgacatctgctggcccaagaaa 461
>dbj|AK065019.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F19, full insert sequence Length = 2378 Score = 234 bits (118), Expect = 2e-58 Identities = 205/234 (87%) Strand = Plus / Minus Query: 159 gcgacaaacagctccgcctgcccgtcgatgaagaggctcatgaactcctccccgtccacg 218 |||||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct: 2093 gcgacaaacaactctgcctgaccgtcgatgaacaggctcatgaactcttccccgtccacc 2034 Query: 219 gtctccttctcgatcaggaggttggcgagcctgtggaggatgtcgatgtgggtgttgatg 278 ||||||||||| ||||| || | || ||| ||||||||||||||||||| || ||||| Sbjct: 2033 gtctccttctccatcagaagctgagcaagcttgtggaggatgtcgatgtgtgtcgtgatg 1974 Query: 279 atctgcgtcgcccgcgagtaggccgtctccacgagttccctgacctcggcatctacgatg 338 |||||||| || | ||||||||| |||||||||| ||||| ||||| ||||| || | Sbjct: 1973 atctgcgttgctcttgagtaggccttctccacgagctccctcacctcagcatccacaaca 1914 Query: 339 tccgccgtggccatcgagtagtccttctggctcgacatctgctggcccaagaaa 392 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1913 tccgcggtggccatcgagtagtccttctggctcgacatctgctggcccaagaaa 1860
>dbj|AK061771.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C10, full insert sequence Length = 1325 Score = 234 bits (118), Expect = 2e-58 Identities = 205/234 (87%) Strand = Plus / Minus Query: 159 gcgacaaacagctccgcctgcccgtcgatgaagaggctcatgaactcctccccgtccacg 218 |||||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct: 1149 gcgacaaacaactctgcctgaccgtcgatgaacaggctcatgaactcttccccgtccacc 1090 Query: 219 gtctccttctcgatcaggaggttggcgagcctgtggaggatgtcgatgtgggtgttgatg 278 ||||||||||| ||||| || | || ||| ||||||||||||||||||| || ||||| Sbjct: 1089 gtctccttctccatcagaagctgagcaagcttgtggaggatgtcgatgtgtgtcgtgatg 1030 Query: 279 atctgcgtcgcccgcgagtaggccgtctccacgagttccctgacctcggcatctacgatg 338 |||||||| || | ||||||||| |||||||||| ||||| ||||| ||||| || | Sbjct: 1029 atctgcgttgctcttgagtaggccttctccacgagctccctcacctcagcatccacaaca 970 Query: 339 tccgccgtggccatcgagtagtccttctggctcgacatctgctggcccaagaaa 392 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 969 tccgcggtggccatcgagtagtccttctggctcgacatctgctggcccaagaaa 916
>gb|AY103957.1| Zea mays PCO116832 mRNA sequence Length = 1820 Score = 234 bits (118), Expect = 2e-58 Identities = 205/234 (87%) Strand = Plus / Minus Query: 159 gcgacaaacagctccgcctgcccgtcgatgaagaggctcatgaactcctccccgtccacg 218 |||||||||||||| ||||| ||||| ||||| | ||||||||||||||||||||||||| Sbjct: 1445 gcgacaaacagctcggcctggccgtcaatgaacaagctcatgaactcctccccgtccacg 1386 Query: 219 gtctccttctcgatcaggaggttggcgagcctgtggaggatgtcgatgtgggtgttgatg 278 |||||||||||||||||||| | ||||||| ||||||||||||||||||| ||| |||| Sbjct: 1385 gtctccttctcgatcaggagctgggcgagcttgtggaggatgtcgatgtgcgtggtgatt 1326 Query: 279 atctgcgtcgcccgcgagtaggccgtctccacgagttccctgacctcggcatctacgatg 338 |||||| | || | ||||||||| |||||||||||||||| |||||||| || || | Sbjct: 1325 atctgccttgctctagagtaggccttctccacgagttccctcacctcggcgtccacaaca 1266 Query: 339 tccgccgtggccatcgagtagtccttctggctcgacatctgctggcccaagaaa 392 ||||| || ||||| ||||||||||||||||| |||||||| || ||||||||| Sbjct: 1265 tccgctgttgccatagagtagtccttctggcttgacatctgttgccccaagaaa 1212 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 atgtggttcctacaagctgg 109 |||||||||||||||||||| Sbjct: 1545 atgtggttcctacaagctgg 1526
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 210 bits (106), Expect = 3e-51 Identities = 193/222 (86%) Strand = Plus / Plus Query: 159 gcgacaaacagctccgcctgcccgtcgatgaagaggctcatgaactcctccccgtccacg 218 |||||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct: 30354728 gcgacaaacaactctgcctgaccgtcgatgaacaggctcatgaactcttccccgtccacc 30354787 Query: 219 gtctccttctcgatcaggaggttggcgagcctgtggaggatgtcgatgtgggtgttgatg 278 ||||||||||| ||||| || | || ||| ||||||||||||||||||| || ||||| Sbjct: 30354788 gtctccttctccatcagaagctgagcaagcttgtggaggatgtcgatgtgtgtcgtgatg 30354847 Query: 279 atctgcgtcgcccgcgagtaggccgtctccacgagttccctgacctcggcatctacgatg 338 |||||||| || | ||||||||| |||||||||| ||||| ||||| ||||| || | Sbjct: 30354848 atctgcgttgctcttgagtaggccttctccacgagctccctcacctcagcatccacaaca 30354907 Query: 339 tccgccgtggccatcgagtagtccttctggctcgacatctgc 380 ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 30354908 tccgcggtggccatcgagtagtccttctggctcgacatctgc 30354949 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 catgtttgcaaaaacaacat 76 |||||||||||||||||||| Sbjct: 15678432 catgtttgcaaaaacaacat 15678451
>dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548E04 Length = 138037 Score = 210 bits (106), Expect = 3e-51 Identities = 193/222 (86%) Strand = Plus / Plus Query: 159 gcgacaaacagctccgcctgcccgtcgatgaagaggctcatgaactcctccccgtccacg 218 |||||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct: 101323 gcgacaaacaactctgcctgaccgtcgatgaacaggctcatgaactcttccccgtccacc 101382 Query: 219 gtctccttctcgatcaggaggttggcgagcctgtggaggatgtcgatgtgggtgttgatg 278 ||||||||||| ||||| || | || ||| ||||||||||||||||||| || ||||| Sbjct: 101383 gtctccttctccatcagaagctgagcaagcttgtggaggatgtcgatgtgtgtcgtgatg 101442 Query: 279 atctgcgtcgcccgcgagtaggccgtctccacgagttccctgacctcggcatctacgatg 338 |||||||| || | ||||||||| |||||||||| ||||| ||||| ||||| || | Sbjct: 101443 atctgcgttgctcttgagtaggccttctccacgagctccctcacctcagcatccacaaca 101502 Query: 339 tccgccgtggccatcgagtagtccttctggctcgacatctgc 380 ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 101503 tccgcggtggccatcgagtagtccttctggctcgacatctgc 101544
>ref|NM_103909.3| Arabidopsis thaliana FTSH1; ATP-dependent peptidase/ ATPase/ metallopeptidase AT1G50250 (FTSH1) mRNA, complete cds Length = 2473 Score = 46.1 bits (23), Expect = 0.085 Identities = 50/59 (84%) Strand = Plus / Minus Query: 180 ccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcaggag 238 ||||| || ||||| ||||||||||| || ||||| || || || |||||||||||||| Sbjct: 2259 ccgtcaataaagagactcatgaactcttcaccgtcaacagtttctttctcgatcaggag 2201
>gb|AC007980.1| Arabidopsis thaliana chromosome I BAC F14I3 genomic sequence, complete sequence Length = 100975 Score = 46.1 bits (23), Expect = 0.085 Identities = 50/59 (84%) Strand = Plus / Minus Query: 180 ccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcaggag 238 ||||| || ||||| ||||||||||| || ||||| || || || |||||||||||||| Sbjct: 62432 ccgtcaataaagagactcatgaactcttcaccgtcaacagtttctttctcgatcaggag 62374
>emb|X99808.1|ATFTSH A.thaliana mRNA for chloroplast FtsH protease Length = 2447 Score = 46.1 bits (23), Expect = 0.085 Identities = 50/59 (84%) Strand = Plus / Minus Query: 180 ccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcaggag 238 ||||| || ||||| ||||||||||| || ||||| || || || |||||||||||||| Sbjct: 2257 ccgtcaataaagagactcatgaactcttcaccgtcaacagtttctttctcgatcaggag 2199
>gb|AY123034.1| Arabidopsis thaliana putative chloroplast FtsH protease (At1g50250) mRNA, complete cds Length = 2182 Score = 46.1 bits (23), Expect = 0.085 Identities = 50/59 (84%) Strand = Plus / Minus Query: 180 ccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcaggag 238 ||||| || ||||| ||||||||||| || ||||| || || || |||||||||||||| Sbjct: 2126 ccgtcaataaagagactcatgaactcttcaccgtcaacagtttctttctcgatcaggag 2068
>gb|AY091095.1| Arabidopsis thaliana putative chloroplast FtsH protease (At1g50250) mRNA, complete cds Length = 2452 Score = 46.1 bits (23), Expect = 0.085 Identities = 50/59 (84%) Strand = Plus / Minus Query: 180 ccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcaggag 238 ||||| || ||||| ||||||||||| || ||||| || || || |||||||||||||| Sbjct: 2222 ccgtcaataaagagactcatgaactcttcaccgtcaacagtttctttctcgatcaggag 2164
>emb|BX815046.1|CNS0AE0R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS28ZC04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2428 Score = 46.1 bits (23), Expect = 0.085 Identities = 50/59 (84%) Strand = Plus / Minus Query: 180 ccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcaggag 238 ||||| || ||||| ||||||||||| || ||||| || || || |||||||||||||| Sbjct: 2258 ccgtcaataaagagactcatgaactcttcaccgtcaacagtttctttctcgatcaggag 2200
>emb|AL355537.11| Human DNA sequence from clone RP11-442O18 on chromosome 10 Contains three novel genes, complete sequence Length = 188728 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 59 tgtttgcaaaaacaacattttt 80 |||||||||||||||||||||| Sbjct: 113149 tgtttgcaaaaacaacattttt 113128
>emb|X90472.1|CAATPASE C.annuum mRNA for ATPase protein Length = 1989 Score = 44.1 bits (22), Expect = 0.34 Identities = 34/38 (89%) Strand = Plus / Minus Query: 348 gccatcgagtagtccttctggctcgacatctgctggcc 385 ||||| ||||||||||||||| | |||||||| ||||| Sbjct: 1864 gccatggagtagtccttctgggttgacatctgttggcc 1827
>gb|AC162693.5| Mus musculus chromosome 15, clone RP24-89G21, complete sequence Length = 159813 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 aggaactatacaaacatgttt 63 ||||||||||||||||||||| Sbjct: 121860 aggaactatacaaacatgttt 121840
>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome Length = 1176248 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 30 gtacatttttacaaggaactataca 54 ||||||||||||||||||| ||||| Sbjct: 350178 gtacatttttacaaggaaccataca 350154
>gb|AC021667.21|AC021667 Mus musculus, clone RP23-304J12, complete sequence Length = 203106 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 aggaactatacaaacatgttt 63 ||||||||||||||||||||| Sbjct: 174774 aggaactatacaaacatgttt 174794
>gb|BT016970.1| Zea mays clone E04912707E08.c mRNA sequence Length = 202 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 159 gcgacaaacagctccgcctgcccgtcgatgaa 190 |||||||||||||| ||||| ||||| ||||| Sbjct: 162 gcgacaaacagctcggcctggccgtcaatgaa 193 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 atgtggttcctacaagctgg 109 |||||||||||||||||||| Sbjct: 62 atgtggttcctacaagctgg 81
>gb|AC009395.7| Drosophila melanogaster clone BACR01D01, complete sequence Length = 189116 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 aggctcatgaactcctccccgtcc 215 |||||||||||||||||| ||||| Sbjct: 125479 aggctcatgaactcctcctcgtcc 125502
>gb|AE009134.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 160 of 256 of the complete sequence Length = 13735 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cctgcccgtcgatgaagagg 194 |||||||||||||||||||| Sbjct: 470 cctgcccgtcgatgaagagg 489
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 aaaacaacatttttactaga 86 |||||||||||||||||||| Sbjct: 30045234 aaaacaacatttttactaga 30045215
>gb|AC130218.4| Mus musculus BAC clone RP23-121N18 from chromosome 18, complete sequence Length = 213673 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gaagaggctcatgaactcct 207 |||||||||||||||||||| Sbjct: 81922 gaagaggctcatgaactcct 81903
>gb|AY094953.1| Drosophila melanogaster RH69586 full insert cDNA Length = 870 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 184 cgatgaagaggctcatgaactcctcccc 211 |||||||||||||||| ||||| ||||| Sbjct: 656 cgatgaagaggctcataaactcttcccc 683
>gb|AC144484.5| Medicago truncatula clone mth2-30o16, complete sequence Length = 121144 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aaacatgtttgcaaaaacaa 73 |||||||||||||||||||| Sbjct: 40718 aaacatgtttgcaaaaacaa 40737
>gb|AC152818.17| Medicago truncatula clone mth2-85g12, complete sequence Length = 142154 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aaacatgtttgcaaaaacaa 73 |||||||||||||||||||| Sbjct: 40721 aaacatgtttgcaaaaacaa 40740
>emb|AL513542.11| Human DNA sequence from clone RP11-129J12 on chromosome 10 Contains a novel gene and three CpG islands, complete sequence Length = 46619 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tttacaaggaactatacaaa 56 |||||||||||||||||||| Sbjct: 44932 tttacaaggaactatacaaa 44951
>emb|AL353719.10| Human DNA sequence from clone RP11-85A1 on chromosome 10 Contains the NKX2-3 gene for NK2 transcription factor related, locus 3 (Drosophila), the gene for putative mitochondrial solute carrier (MRS3/4) and five CpG islands, complete sequence Length = 123160 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tttacaaggaactatacaaa 56 |||||||||||||||||||| Sbjct: 313 tttacaaggaactatacaaa 332
>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome Length = 1512977 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 acatttttacaaggaactat 51 |||||||||||||||||||| Sbjct: 1065574 acatttttacaaggaactat 1065593
>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome Length = 1499920 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 acatttttacaaggaactat 51 |||||||||||||||||||| Sbjct: 1057462 acatttttacaaggaactat 1057481
>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome Length = 1516355 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 acatttttacaaggaactat 51 |||||||||||||||||||| Sbjct: 1086863 acatttttacaaggaactat 1086882
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aaaacaacatttttactaga 86 |||||||||||||||||||| Sbjct: 62517 aaaacaacatttttactaga 62536
>emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011F23, complete sequence Length = 149353 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aaaacaacatttttactaga 86 |||||||||||||||||||| Sbjct: 52316 aaaacaacatttttactaga 52335
>ref|NM_169826.1| Drosophila melanogaster CG31224-RA (CG31224), mRNA Length = 7059 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 192 aggctcatgaactcctccccgtcc 215 |||||||||||||||||| ||||| Sbjct: 2447 aggctcatgaactcctcctcgtcc 2424
>ref|NM_078959.3| Drosophila melanogaster Peroxiredoxin 2540 CG11765-RA (Prx2540-2), mRNA Length = 868 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 184 cgatgaagaggctcatgaactcctcccc 211 |||||||||||||||| ||||| ||||| Sbjct: 657 cgatgaagaggctcataaactcttcccc 684
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cctgcccgtcgatgaagagg 194 |||||||||||||||||||| Sbjct: 1766640 cctgcccgtcgatgaagagg 1766659
>gb|AY075377.1| Drosophila melanogaster LD06123 full length cDNA Length = 3188 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 192 aggctcatgaactcctccccgtcc 215 |||||||||||||||||| ||||| Sbjct: 2447 aggctcatgaactcctcctcgtcc 2424
>gb|AY070952.1| Drosophila melanogaster RE05093 full length cDNA Length = 870 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 184 cgatgaagaggctcatgaactcctcccc 211 |||||||||||||||| ||||| ||||| Sbjct: 655 cgatgaagaggctcataaactcttcccc 682
>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence Length = 181577 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aaaacaacatttttactaga 86 |||||||||||||||||||| Sbjct: 52509 aaaacaacatttttactaga 52528
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aaaacaacatttttactaga 86 |||||||||||||||||||| Sbjct: 33621256 aaaacaacatttttactaga 33621275
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aaaacaacatttttactaga 86 |||||||||||||||||||| Sbjct: 18087307 aaaacaacatttttactaga 18087326
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 aaaacaacatttttactaga 86 |||||||||||||||||||| Sbjct: 30136656 aaaacaacatttttactaga 30136637
>gb|AC007398.6|AC007398 Drosophila melanogaster, chromosome 2R, region 47A-47B, BAC clone BACR20O22, complete sequence Length = 168567 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 184 cgatgaagaggctcatgaactcctcccc 211 |||||||||||||||| ||||| ||||| Sbjct: 77043 cgatgaagaggctcataaactcttcccc 77070
>gb|AC007812.6|AC007812 Drosophila melanogaster, chromosome 3R, region 91C-91C, BAC clone BACR01F15, complete sequence Length = 186989 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 aggctcatgaactcctccccgtcc 215 |||||||||||||||||| ||||| Sbjct: 35762 aggctcatgaactcctcctcgtcc 35785
>gb|BT003589.1| Drosophila melanogaster LD03662 full insert cDNA Length = 2508 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 192 aggctcatgaactcctccccgtcc 215 |||||||||||||||||| ||||| Sbjct: 1241 aggctcatgaactcctcctcgtcc 1218
>dbj|AP003520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0021H10 Length = 142659 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 catgtttgcaaaaacaacat 76 |||||||||||||||||||| Sbjct: 14070 catgtttgcaaaaacaacat 14089
>gb|AC140071.4| Mus musculus BAC clone RP23-394K8 from 3, complete sequence Length = 203896 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 atacaaacatgtttgcaaaa 69 |||||||||||||||||||| Sbjct: 48422 atacaaacatgtttgcaaaa 48441
>emb|CR450802.8| Zebrafish DNA sequence from clone CH211-197I12 in linkage group 22, complete sequence Length = 186908 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 tgcaaaaacaacatttttac 82 |||||||||||||||||||| Sbjct: 35478 tgcaaaaacaacatttttac 35459
>emb|AL772158.6| Zebrafish DNA sequence from clone CH211-128N21 in linkage group 22, complete sequence Length = 178046 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 tgcaaaaacaacatttttac 82 |||||||||||||||||||| Sbjct: 29442 tgcaaaaacaacatttttac 29461
>emb|BX005362.6| Zebrafish DNA sequence from clone CH211-159C12 in linkage group 22, complete sequence Length = 178151 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 tgcaaaaacaacatttttac 82 |||||||||||||||||||| Sbjct: 144817 tgcaaaaacaacatttttac 144836
>gb|AE003723.5| Drosophila melanogaster chromosome 3R, section 61 of 118 of the complete sequence Length = 255619 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 aggctcatgaactcctccccgtcc 215 |||||||||||||||||| ||||| Sbjct: 48507 aggctcatgaactcctcctcgtcc 48530
>gb|AE003829.4| Drosophila melanogaster chromosome 2R, section 21 of 73 of the complete sequence Length = 281782 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 184 cgatgaagaggctcatgaactcctcccc 211 |||||||||||||||| ||||| ||||| Sbjct: 55947 cgatgaagaggctcataaactcttcccc 55974
>dbj|AB100244.1| Penicillium camemberti pyrG gene for orotidine-5'-phosphate decarboxylase, complete cds Length = 2580 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 254 gaggatgtcgatgtgggtgttgat 277 |||||||||||||||||| ||||| Sbjct: 1353 gaggatgtcgatgtgggttttgat 1330
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aaaacaacatttttactaga 86 |||||||||||||||||||| Sbjct: 18013628 aaaacaacatttttactaga 18013647
>emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa0028O09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155927 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aaaacaacatttttactaga 86 |||||||||||||||||||| Sbjct: 40985 aaaacaacatttttactaga 41004
>emb|CR974592.5| Mouse DNA sequence from clone RP23-56C15 on chromosome 12, complete sequence Length = 201549 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 tttgcaaaaacaacattttt 80 |||||||||||||||||||| Sbjct: 20409 tttgcaaaaacaacattttt 20428
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 catcgagtagtccttctggc 369 |||||||||||||||||||| Sbjct: 2170771 catcgagtagtccttctggc 2170790
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 catcgagtagtccttctggc 369 |||||||||||||||||||| Sbjct: 970532 catcgagtagtccttctggc 970551 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,769,312 Number of Sequences: 3902068 Number of extensions: 2769312 Number of successful extensions: 52974 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52633 Number of HSP's gapped (non-prelim): 338 length of query: 392 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 370 effective length of database: 17,147,199,772 effective search space: 6344463915640 effective search space used: 6344463915640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)