ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61d19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009112.1| Triticum aestivum clone wl1.pk0008.c2:fis, full i... 591 e-166
2gb|BT009457.1| Triticum aestivum clone wlp1c.pk007.f6:fis, full ... 557 e-156
3gb|BT009148.1| Triticum aestivum clone wl1n.pk0059.g7:fis, full ... 527 e-147
4dbj|AK065019.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 2e-58
5dbj|AK061771.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 2e-58
6gb|AY103957.1| Zea mays PCO116832 mRNA sequence 234 2e-58
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
8dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
9ref|NM_103909.3| Arabidopsis thaliana FTSH1; ATP-dependent pepti... 46 0.085
10gb|AC007980.1| Arabidopsis thaliana chromosome I BAC F14I3 genom... 46 0.085
11emb|X99808.1|ATFTSH A.thaliana mRNA for chloroplast FtsH protease 46 0.085
12gb|AY123034.1| Arabidopsis thaliana putative chloroplast FtsH pr... 46 0.085
13gb|AY091095.1| Arabidopsis thaliana putative chloroplast FtsH pr... 46 0.085
14emb|BX815046.1|CNS0AE0R Arabidopsis thaliana Full-length cDNA Co... 46 0.085
15emb|AL355537.11| Human DNA sequence from clone RP11-442O18 on ch... 44 0.34
16emb|X90472.1|CAATPASE C.annuum mRNA for ATPase protein 44 0.34
17gb|AC162693.5| Mus musculus chromosome 15, clone RP24-89G21, com... 42 1.3
18gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome 42 1.3
19gb|AC021667.21|AC021667 Mus musculus, clone RP23-304J12, complet... 42 1.3
20gb|BT016970.1| Zea mays clone E04912707E08.c mRNA sequence 40 5.2
21gb|AC009395.7| Drosophila melanogaster clone BACR01D01, complete... 40 5.2
22gb|AE009134.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 5.2
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.2
24gb|AC130218.4| Mus musculus BAC clone RP23-121N18 from chromosom... 40 5.2
25gb|AY094953.1| Drosophila melanogaster RH69586 full insert cDNA 40 5.2
26gb|AC144484.5| Medicago truncatula clone mth2-30o16, complete se... 40 5.2
27gb|AC152818.17| Medicago truncatula clone mth2-85g12, complete s... 40 5.2
28emb|AL513542.11| Human DNA sequence from clone RP11-129J12 on ch... 40 5.2
29emb|AL353719.10| Human DNA sequence from clone RP11-85A1 on chro... 40 5.2
30emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete... 40 5.2
31emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 40 5.2
32emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple... 40 5.2
33gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 40 5.2
34emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4,... 40 5.2
35ref|NM_169826.1| Drosophila melanogaster CG31224-RA (CG31224), mRNA 40 5.2
36ref|NM_078959.3| Drosophila melanogaster Peroxiredoxin 2540 CG11... 40 5.2
37gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 5.2
38gb|AY075377.1| Drosophila melanogaster LD06123 full length cDNA 40 5.2
39gb|AY070952.1| Drosophila melanogaster RE05093 full length cDNA 40 5.2
40gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence 40 5.2
41dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
42dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
43dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
44gb|AC007398.6|AC007398 Drosophila melanogaster, chromosome 2R, r... 40 5.2
45gb|AC007812.6|AC007812 Drosophila melanogaster, chromosome 3R, r... 40 5.2
46gb|BT003589.1| Drosophila melanogaster LD03662 full insert cDNA 40 5.2
47dbj|AP003520.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
48gb|AC140071.4| Mus musculus BAC clone RP23-394K8 from 3, complet... 40 5.2
49emb|CR450802.8| Zebrafish DNA sequence from clone CH211-197I12 i... 40 5.2
50emb|AL772158.6| Zebrafish DNA sequence from clone CH211-128N21 i... 40 5.2
51emb|BX005362.6| Zebrafish DNA sequence from clone CH211-159C12 i... 40 5.2
52gb|AE003723.5| Drosophila melanogaster chromosome 3R, section 61... 40 5.2
53gb|AE003829.4| Drosophila melanogaster chromosome 2R, section 21... 40 5.2
54dbj|AB100244.1| Penicillium camemberti pyrG gene for orotidine-5... 40 5.2
55gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
56emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.2
57emb|CR974592.5| Mouse DNA sequence from clone RP23-56C15 on chro... 40 5.2
58gb|CP000036.1| Shigella boydii Sb227, complete genome 40 5.2
59gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 5.2 
>gb|BT009112.1| Triticum aestivum clone wl1.pk0008.c2:fis, full insert mRNA
           sequence
          Length = 654

 Score =  591 bits (298), Expect = e-166
 Identities = 369/393 (93%), Gaps = 4/393 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   tgtattaatcgacgcactcagtgtnngtaca----tttttacaaggaactatacaaacat 59
           ||||||||||| ||| ||||||||  |||||    |||||||||||||||||||||||||
Sbjct: 615 tgtattaatcggcgcgctcagtgtcagtacaggcatttttacaaggaactatacaaacat 556

                                                                       
Query: 60  gtttgcaaaaacaacatttttactagatcaatgtggttcctacaagctggaccctcgtat 119
           ||||||  ||| |||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 555 gtttgcggaaagaacatttttactagatcaatgtggttcctacaacttggaccctcgtat 496

                                                                       
Query: 120 aaccgccgaaaacatacagggcatgacggggcgacttatgcgacaaacagctccgcctgc 179
           || | | ||||||||||| |||| |||  | ||||||||||||| |||||||| ||||||
Sbjct: 495 aatcacggaaaacatacaaggcacgacaagtcgacttatgcgacgaacagctctgcctgc 436

                                                                       
Query: 180 ccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcaggagg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcaggagg 376

                                                                       
Query: 240 ttggcgagcctgtggaggatgtcgatgtgggtgttgatgatctgcgtcgcccgcgagtag 299
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttggcgagcctgtggaggatatcgatgtgggtgttgatgatctgcgtcgcccgcgagtag 316

                                                                       
Query: 300 gccgtctccacgagttccctgacctcggcatctacgatgtccgccgtggccatcgagtag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gccgtctccacgagttccctgacctcggcatctacgatgtccgccgtggccatcgagtag 256

                                            
Query: 360 tccttctggctcgacatctgctggcccaagaaa 392
           |||||||||||||||||||||||||||||||||
Sbjct: 255 tccttctggctcgacatctgctggcccaagaaa 223
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>gb|BT009457.1| Triticum aestivum clone wlp1c.pk007.f6:fis, full insert mRNA sequence
          Length = 1556

 Score =  557 bits (281), Expect = e-156
 Identities = 372/400 (93%), Gaps = 11/400 (2%)
 Strand = Plus / Minus

                                                                        
Query: 4    tgtattaatcgacgcactcagtgtnngtaca-----tttttacaaggaactatacaaaca 58
            ||||||||| ||||| ||||||||  |||||     ||||||||||||||||||||||||
Sbjct: 1524 tgtattaattgacgcgctcagtgtcagtacaggtattttttacaaggaactatacaaaca 1465

                                                                        
Query: 59   tgtttgcaaaaacaacattttt-actagatcaatgtggttcctacaagctggaccctcgt 117
            ||||||| |||| ||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 1464 tgtttgcgaaaagaacattttttactagatcaatgtggttcctacaagttggaccctcgt 1405

                                                                        
Query: 118  ataaccgccgaaaa-catacagggcatg----acggggcgacttatgcgacaaacagctc 172
            |||| | || |||| ||||||||||| |    ||  | ||||||||||||| ||||||||
Sbjct: 1404 ataatcaccaaaaaacatacagggcacgcacgacaagtcgacttatgcgacgaacagctc 1345

                                                                        
Query: 173  cgcctgcccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgat 232
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 tgcctgcccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgat 1285

                                                                        
Query: 233  caggaggttggcgagcctgtggaggatgtcgatgtgggtgttgatgatctgcgtcgcccg 292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 caggaggttggcgagcctgtggaggatgtcgatgtgggtgttgatgatctgcgtcgcccg 1225

                                                                        
Query: 293  cgagtaggccgtctccacgagttccctgacctcggcatctacgatgtccgccgtggccat 352
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1224 cgagtaggccgtctccacgagttccctgacctcggcgtctacgatgtccgccgtggccat 1165

                                                    
Query: 353  cgagtagtccttctggctcgacatctgctggcccaagaaa 392
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 cgagtagtccttctggctcgacatctgctggcccaagaaa 1125
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>gb|BT009148.1| Triticum aestivum clone wl1n.pk0059.g7:fis, full insert mRNA
           sequence
          Length = 890

 Score =  527 bits (266), Expect = e-147
 Identities = 365/397 (91%), Gaps = 15/397 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gtattaatcgacgcactcagtgtnngtaca-------tttttacaaggaa-ctatacaaa 56
           |||||||||||||| ||||||||  |||||       ||||||||||||| |||||||||
Sbjct: 851 gtattaatcgacgcgctcagtgtcagtacaggcattttttttacaaggaaactatacaaa 792

                                                                       
Query: 57  catgtttgcaaaaacaacatttttactagatcaatgtggttcctacaagctggaccctcg 116
           ||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 791 catgtttgcgaaaagaacatttttactagatcaatgtggttcctacaagttggaccctcg 732

                                                                       
Query: 117 tataaccgccgaaaa-catacagggcatgacggggcgacttatgcgacaaacagctccgc 175
           | ||| | ||||||| ||||||||      || |  |||||||||||| |||||||| ||
Sbjct: 731 tgtaatcaccgaaaaacatacagg------cgagttgacttatgcgacgaacagctctgc 678

                                                                       
Query: 176 ctgcccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcag 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 677 ctgcccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatgag 618

                                                                       
Query: 236 gaggttggcgagcctgtggaggatgtcgatgtgggtgttgatgatctgcgtcgcccgcga 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 617 gaggttggcgagcctgtggaggatgtcgatgtgggtgttgatgatctgcgtcgcgcgcga 558

                                                                       
Query: 296 gtaggccgtctccacgagttccctgacctcggcatctacgatgtccgccgtggccatcga 355
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 557 gtaggccgtctccacgagttccctgacctcggcgtctacgatgtccgccgtggccatcga 498

                                                
Query: 356 gtagtccttctggctcgacatctgctggcccaagaaa 392
           |||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtagtccttctggctcgacatctgctggcccaagaaa 461
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>dbj|AK065019.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F19, full
            insert sequence
          Length = 2378

 Score =  234 bits (118), Expect = 2e-58
 Identities = 205/234 (87%)
 Strand = Plus / Minus

                                                                        
Query: 159  gcgacaaacagctccgcctgcccgtcgatgaagaggctcatgaactcctccccgtccacg 218
            |||||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 2093 gcgacaaacaactctgcctgaccgtcgatgaacaggctcatgaactcttccccgtccacc 2034

                                                                        
Query: 219  gtctccttctcgatcaggaggttggcgagcctgtggaggatgtcgatgtgggtgttgatg 278
            ||||||||||| ||||| || |  || ||| ||||||||||||||||||| ||  |||||
Sbjct: 2033 gtctccttctccatcagaagctgagcaagcttgtggaggatgtcgatgtgtgtcgtgatg 1974

                                                                        
Query: 279  atctgcgtcgcccgcgagtaggccgtctccacgagttccctgacctcggcatctacgatg 338
            |||||||| || |  ||||||||| |||||||||| ||||| ||||| ||||| || |  
Sbjct: 1973 atctgcgttgctcttgagtaggccttctccacgagctccctcacctcagcatccacaaca 1914

                                                                  
Query: 339  tccgccgtggccatcgagtagtccttctggctcgacatctgctggcccaagaaa 392
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1913 tccgcggtggccatcgagtagtccttctggctcgacatctgctggcccaagaaa 1860
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>dbj|AK061771.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C10, full
            insert sequence
          Length = 1325

 Score =  234 bits (118), Expect = 2e-58
 Identities = 205/234 (87%)
 Strand = Plus / Minus

                                                                        
Query: 159  gcgacaaacagctccgcctgcccgtcgatgaagaggctcatgaactcctccccgtccacg 218
            |||||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 1149 gcgacaaacaactctgcctgaccgtcgatgaacaggctcatgaactcttccccgtccacc 1090

                                                                        
Query: 219  gtctccttctcgatcaggaggttggcgagcctgtggaggatgtcgatgtgggtgttgatg 278
            ||||||||||| ||||| || |  || ||| ||||||||||||||||||| ||  |||||
Sbjct: 1089 gtctccttctccatcagaagctgagcaagcttgtggaggatgtcgatgtgtgtcgtgatg 1030

                                                                        
Query: 279  atctgcgtcgcccgcgagtaggccgtctccacgagttccctgacctcggcatctacgatg 338
            |||||||| || |  ||||||||| |||||||||| ||||| ||||| ||||| || |  
Sbjct: 1029 atctgcgttgctcttgagtaggccttctccacgagctccctcacctcagcatccacaaca 970

                                                                  
Query: 339  tccgccgtggccatcgagtagtccttctggctcgacatctgctggcccaagaaa 392
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  tccgcggtggccatcgagtagtccttctggctcgacatctgctggcccaagaaa 916
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>gb|AY103957.1| Zea mays PCO116832 mRNA sequence
          Length = 1820

 Score =  234 bits (118), Expect = 2e-58
 Identities = 205/234 (87%)
 Strand = Plus / Minus

                                                                        
Query: 159  gcgacaaacagctccgcctgcccgtcgatgaagaggctcatgaactcctccccgtccacg 218
            |||||||||||||| ||||| ||||| ||||| | |||||||||||||||||||||||||
Sbjct: 1445 gcgacaaacagctcggcctggccgtcaatgaacaagctcatgaactcctccccgtccacg 1386

                                                                        
Query: 219  gtctccttctcgatcaggaggttggcgagcctgtggaggatgtcgatgtgggtgttgatg 278
            |||||||||||||||||||| | ||||||| ||||||||||||||||||| ||| |||| 
Sbjct: 1385 gtctccttctcgatcaggagctgggcgagcttgtggaggatgtcgatgtgcgtggtgatt 1326

                                                                        
Query: 279  atctgcgtcgcccgcgagtaggccgtctccacgagttccctgacctcggcatctacgatg 338
            |||||| | || |  ||||||||| |||||||||||||||| |||||||| || || |  
Sbjct: 1325 atctgccttgctctagagtaggccttctccacgagttccctcacctcggcgtccacaaca 1266

                                                                  
Query: 339  tccgccgtggccatcgagtagtccttctggctcgacatctgctggcccaagaaa 392
            ||||| || ||||| ||||||||||||||||| |||||||| || |||||||||
Sbjct: 1265 tccgctgttgccatagagtagtccttctggcttgacatctgttgccccaagaaa 1212



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   atgtggttcctacaagctgg 109
            ||||||||||||||||||||
Sbjct: 1545 atgtggttcctacaagctgg 1526
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  210 bits (106), Expect = 3e-51
 Identities = 193/222 (86%)
 Strand = Plus / Plus

                                                                            
Query: 159      gcgacaaacagctccgcctgcccgtcgatgaagaggctcatgaactcctccccgtccacg 218
                |||||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 30354728 gcgacaaacaactctgcctgaccgtcgatgaacaggctcatgaactcttccccgtccacc 30354787

                                                                            
Query: 219      gtctccttctcgatcaggaggttggcgagcctgtggaggatgtcgatgtgggtgttgatg 278
                ||||||||||| ||||| || |  || ||| ||||||||||||||||||| ||  |||||
Sbjct: 30354788 gtctccttctccatcagaagctgagcaagcttgtggaggatgtcgatgtgtgtcgtgatg 30354847

                                                                            
Query: 279      atctgcgtcgcccgcgagtaggccgtctccacgagttccctgacctcggcatctacgatg 338
                |||||||| || |  ||||||||| |||||||||| ||||| ||||| ||||| || |  
Sbjct: 30354848 atctgcgttgctcttgagtaggccttctccacgagctccctcacctcagcatccacaaca 30354907

                                                          
Query: 339      tccgccgtggccatcgagtagtccttctggctcgacatctgc 380
                ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 30354908 tccgcggtggccatcgagtagtccttctggctcgacatctgc 30354949



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 57       catgtttgcaaaaacaacat 76
                ||||||||||||||||||||
Sbjct: 15678432 catgtttgcaaaaacaacat 15678451
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>dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0548E04
          Length = 138037

 Score =  210 bits (106), Expect = 3e-51
 Identities = 193/222 (86%)
 Strand = Plus / Plus

                                                                          
Query: 159    gcgacaaacagctccgcctgcccgtcgatgaagaggctcatgaactcctccccgtccacg 218
              |||||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 101323 gcgacaaacaactctgcctgaccgtcgatgaacaggctcatgaactcttccccgtccacc 101382

                                                                          
Query: 219    gtctccttctcgatcaggaggttggcgagcctgtggaggatgtcgatgtgggtgttgatg 278
              ||||||||||| ||||| || |  || ||| ||||||||||||||||||| ||  |||||
Sbjct: 101383 gtctccttctccatcagaagctgagcaagcttgtggaggatgtcgatgtgtgtcgtgatg 101442

                                                                          
Query: 279    atctgcgtcgcccgcgagtaggccgtctccacgagttccctgacctcggcatctacgatg 338
              |||||||| || |  ||||||||| |||||||||| ||||| ||||| ||||| || |  
Sbjct: 101443 atctgcgttgctcttgagtaggccttctccacgagctccctcacctcagcatccacaaca 101502

                                                        
Query: 339    tccgccgtggccatcgagtagtccttctggctcgacatctgc 380
              ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 101503 tccgcggtggccatcgagtagtccttctggctcgacatctgc 101544
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>ref|NM_103909.3| Arabidopsis thaliana FTSH1; ATP-dependent peptidase/ ATPase/
            metallopeptidase AT1G50250 (FTSH1) mRNA, complete cds
          Length = 2473

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 180  ccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcaggag 238
            ||||| || ||||| ||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 2259 ccgtcaataaagagactcatgaactcttcaccgtcaacagtttctttctcgatcaggag 2201
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>gb|AC007980.1| Arabidopsis thaliana chromosome I BAC F14I3 genomic sequence, complete
             sequence
          Length = 100975

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 180   ccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcaggag 238
             ||||| || ||||| ||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 62432 ccgtcaataaagagactcatgaactcttcaccgtcaacagtttctttctcgatcaggag 62374
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>emb|X99808.1|ATFTSH A.thaliana mRNA for chloroplast FtsH protease
          Length = 2447

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 180  ccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcaggag 238
            ||||| || ||||| ||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 2257 ccgtcaataaagagactcatgaactcttcaccgtcaacagtttctttctcgatcaggag 2199
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>gb|AY123034.1| Arabidopsis thaliana putative chloroplast FtsH protease (At1g50250)
            mRNA, complete cds
          Length = 2182

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 180  ccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcaggag 238
            ||||| || ||||| ||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 2126 ccgtcaataaagagactcatgaactcttcaccgtcaacagtttctttctcgatcaggag 2068
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>gb|AY091095.1| Arabidopsis thaliana putative chloroplast FtsH protease (At1g50250)
            mRNA, complete cds
          Length = 2452

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 180  ccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcaggag 238
            ||||| || ||||| ||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 2222 ccgtcaataaagagactcatgaactcttcaccgtcaacagtttctttctcgatcaggag 2164
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>emb|BX815046.1|CNS0AE0R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS28ZC04 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2428

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 180  ccgtcgatgaagaggctcatgaactcctccccgtccacggtctccttctcgatcaggag 238
            ||||| || ||||| ||||||||||| || ||||| || || || ||||||||||||||
Sbjct: 2258 ccgtcaataaagagactcatgaactcttcaccgtcaacagtttctttctcgatcaggag 2200
to top
>emb|AL355537.11| Human DNA sequence from clone RP11-442O18 on chromosome 10 Contains three
              novel genes, complete sequence
          Length = 188728

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 59     tgtttgcaaaaacaacattttt 80
              ||||||||||||||||||||||
Sbjct: 113149 tgtttgcaaaaacaacattttt 113128
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>emb|X90472.1|CAATPASE C.annuum mRNA for ATPase protein
          Length = 1989

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 348  gccatcgagtagtccttctggctcgacatctgctggcc 385
            ||||| ||||||||||||||| | |||||||| |||||
Sbjct: 1864 gccatggagtagtccttctgggttgacatctgttggcc 1827
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>gb|AC162693.5| Mus musculus chromosome 15, clone RP24-89G21, complete sequence
          Length = 159813

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 43     aggaactatacaaacatgttt 63
              |||||||||||||||||||||
Sbjct: 121860 aggaactatacaaacatgttt 121840
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>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome
          Length = 1176248

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 30     gtacatttttacaaggaactataca 54
              ||||||||||||||||||| |||||
Sbjct: 350178 gtacatttttacaaggaaccataca 350154
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>gb|AC021667.21|AC021667 Mus musculus, clone RP23-304J12, complete sequence
          Length = 203106

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 43     aggaactatacaaacatgttt 63
              |||||||||||||||||||||
Sbjct: 174774 aggaactatacaaacatgttt 174794
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>gb|BT016970.1| Zea mays clone E04912707E08.c mRNA sequence
          Length = 202

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 159 gcgacaaacagctccgcctgcccgtcgatgaa 190
           |||||||||||||| ||||| ||||| |||||
Sbjct: 162 gcgacaaacagctcggcctggccgtcaatgaa 193



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  atgtggttcctacaagctgg 109
           ||||||||||||||||||||
Sbjct: 62  atgtggttcctacaagctgg 81
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>gb|AC009395.7| Drosophila melanogaster clone BACR01D01, complete sequence
          Length = 189116

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 192    aggctcatgaactcctccccgtcc 215
              |||||||||||||||||| |||||
Sbjct: 125479 aggctcatgaactcctcctcgtcc 125502
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>gb|AE009134.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 160
           of 256 of the complete sequence
          Length = 13735

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 175 cctgcccgtcgatgaagagg 194
           ||||||||||||||||||||
Sbjct: 470 cctgcccgtcgatgaagagg 489
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 67       aaaacaacatttttactaga 86
                ||||||||||||||||||||
Sbjct: 30045234 aaaacaacatttttactaga 30045215
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>gb|AC130218.4| Mus musculus BAC clone RP23-121N18 from chromosome 18, complete
             sequence
          Length = 213673

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   gaagaggctcatgaactcct 207
             ||||||||||||||||||||
Sbjct: 81922 gaagaggctcatgaactcct 81903
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>gb|AY094953.1| Drosophila melanogaster RH69586 full insert cDNA
          Length = 870

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 184 cgatgaagaggctcatgaactcctcccc 211
           |||||||||||||||| ||||| |||||
Sbjct: 656 cgatgaagaggctcataaactcttcccc 683
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>gb|AC144484.5| Medicago truncatula clone mth2-30o16, complete sequence
          Length = 121144

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    aaacatgtttgcaaaaacaa 73
             ||||||||||||||||||||
Sbjct: 40718 aaacatgtttgcaaaaacaa 40737
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>gb|AC152818.17| Medicago truncatula clone mth2-85g12, complete sequence
          Length = 142154

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    aaacatgtttgcaaaaacaa 73
             ||||||||||||||||||||
Sbjct: 40721 aaacatgtttgcaaaaacaa 40740
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>emb|AL513542.11| Human DNA sequence from clone RP11-129J12 on chromosome 10 Contains a
             novel gene and three CpG islands, complete sequence
          Length = 46619

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    tttacaaggaactatacaaa 56
             ||||||||||||||||||||
Sbjct: 44932 tttacaaggaactatacaaa 44951
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>emb|AL353719.10| Human DNA sequence from clone RP11-85A1 on chromosome 10 Contains
           the NKX2-3 gene for NK2 transcription factor related,
           locus 3 (Drosophila), the gene for putative
           mitochondrial solute carrier (MRS3/4) and five CpG
           islands, complete sequence
          Length = 123160

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 37  tttacaaggaactatacaaa 56
           ||||||||||||||||||||
Sbjct: 313 tttacaaggaactatacaaa 332
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>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 32      acatttttacaaggaactat 51
               ||||||||||||||||||||
Sbjct: 1065574 acatttttacaaggaactat 1065593
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>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 32      acatttttacaaggaactat 51
               ||||||||||||||||||||
Sbjct: 1057462 acatttttacaaggaactat 1057481
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>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 32      acatttttacaaggaactat 51
               ||||||||||||||||||||
Sbjct: 1086863 acatttttacaaggaactat 1086882
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    aaaacaacatttttactaga 86
             ||||||||||||||||||||
Sbjct: 62517 aaaacaacatttttactaga 62536
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>emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011F23,
             complete sequence
          Length = 149353

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    aaaacaacatttttactaga 86
             ||||||||||||||||||||
Sbjct: 52316 aaaacaacatttttactaga 52335
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>ref|NM_169826.1| Drosophila melanogaster CG31224-RA (CG31224), mRNA
          Length = 7059

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 192  aggctcatgaactcctccccgtcc 215
            |||||||||||||||||| |||||
Sbjct: 2447 aggctcatgaactcctcctcgtcc 2424
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>ref|NM_078959.3| Drosophila melanogaster Peroxiredoxin 2540 CG11765-RA (Prx2540-2),
           mRNA
          Length = 868

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 184 cgatgaagaggctcatgaactcctcccc 211
           |||||||||||||||| ||||| |||||
Sbjct: 657 cgatgaagaggctcataaactcttcccc 684
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 175     cctgcccgtcgatgaagagg 194
               ||||||||||||||||||||
Sbjct: 1766640 cctgcccgtcgatgaagagg 1766659
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>gb|AY075377.1| Drosophila melanogaster LD06123 full length cDNA
          Length = 3188

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 192  aggctcatgaactcctccccgtcc 215
            |||||||||||||||||| |||||
Sbjct: 2447 aggctcatgaactcctcctcgtcc 2424
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>gb|AY070952.1| Drosophila melanogaster RE05093 full length cDNA
          Length = 870

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 184 cgatgaagaggctcatgaactcctcccc 211
           |||||||||||||||| ||||| |||||
Sbjct: 655 cgatgaagaggctcataaactcttcccc 682
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>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence
          Length = 181577

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    aaaacaacatttttactaga 86
             ||||||||||||||||||||
Sbjct: 52509 aaaacaacatttttactaga 52528
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 67       aaaacaacatttttactaga 86
                ||||||||||||||||||||
Sbjct: 33621256 aaaacaacatttttactaga 33621275
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 67       aaaacaacatttttactaga 86
                ||||||||||||||||||||
Sbjct: 18087307 aaaacaacatttttactaga 18087326
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 67       aaaacaacatttttactaga 86
                ||||||||||||||||||||
Sbjct: 30136656 aaaacaacatttttactaga 30136637
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>gb|AC007398.6|AC007398 Drosophila melanogaster, chromosome 2R, region 47A-47B, BAC clone
             BACR20O22, complete sequence
          Length = 168567

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 184   cgatgaagaggctcatgaactcctcccc 211
             |||||||||||||||| ||||| |||||
Sbjct: 77043 cgatgaagaggctcataaactcttcccc 77070
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>gb|AC007812.6|AC007812 Drosophila melanogaster, chromosome 3R, region 91C-91C, BAC clone
             BACR01F15, complete sequence
          Length = 186989

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 192   aggctcatgaactcctccccgtcc 215
             |||||||||||||||||| |||||
Sbjct: 35762 aggctcatgaactcctcctcgtcc 35785
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>gb|BT003589.1| Drosophila melanogaster LD03662 full insert cDNA
          Length = 2508

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 192  aggctcatgaactcctccccgtcc 215
            |||||||||||||||||| |||||
Sbjct: 1241 aggctcatgaactcctcctcgtcc 1218
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>dbj|AP003520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0021H10
          Length = 142659

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    catgtttgcaaaaacaacat 76
             ||||||||||||||||||||
Sbjct: 14070 catgtttgcaaaaacaacat 14089
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>gb|AC140071.4| Mus musculus BAC clone RP23-394K8 from 3, complete sequence
          Length = 203896

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    atacaaacatgtttgcaaaa 69
             ||||||||||||||||||||
Sbjct: 48422 atacaaacatgtttgcaaaa 48441
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>emb|CR450802.8| Zebrafish DNA sequence from clone CH211-197I12 in linkage group 22,
             complete sequence
          Length = 186908

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    tgcaaaaacaacatttttac 82
             ||||||||||||||||||||
Sbjct: 35478 tgcaaaaacaacatttttac 35459
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>emb|AL772158.6| Zebrafish DNA sequence from clone CH211-128N21 in linkage group 22,
             complete sequence
          Length = 178046

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    tgcaaaaacaacatttttac 82
             ||||||||||||||||||||
Sbjct: 29442 tgcaaaaacaacatttttac 29461
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>emb|BX005362.6| Zebrafish DNA sequence from clone CH211-159C12 in linkage group 22,
              complete sequence
          Length = 178151

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     tgcaaaaacaacatttttac 82
              ||||||||||||||||||||
Sbjct: 144817 tgcaaaaacaacatttttac 144836
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>gb|AE003723.5| Drosophila melanogaster chromosome 3R, section 61 of 118 of the
             complete sequence
          Length = 255619

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 192   aggctcatgaactcctccccgtcc 215
             |||||||||||||||||| |||||
Sbjct: 48507 aggctcatgaactcctcctcgtcc 48530
to top
>gb|AE003829.4| Drosophila melanogaster chromosome 2R, section 21 of 73 of the complete
             sequence
          Length = 281782

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 184   cgatgaagaggctcatgaactcctcccc 211
             |||||||||||||||| ||||| |||||
Sbjct: 55947 cgatgaagaggctcataaactcttcccc 55974
to top
>dbj|AB100244.1| Penicillium camemberti pyrG gene for orotidine-5'-phosphate
            decarboxylase, complete cds
          Length = 2580

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 254  gaggatgtcgatgtgggtgttgat 277
            |||||||||||||||||| |||||
Sbjct: 1353 gaggatgtcgatgtgggttttgat 1330
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 67       aaaacaacatttttactaga 86
                ||||||||||||||||||||
Sbjct: 18013628 aaaacaacatttttactaga 18013647
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>emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa0028O09 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 155927

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    aaaacaacatttttactaga 86
             ||||||||||||||||||||
Sbjct: 40985 aaaacaacatttttactaga 41004
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>emb|CR974592.5| Mouse DNA sequence from clone RP23-56C15 on chromosome 12, complete
             sequence
          Length = 201549

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    tttgcaaaaacaacattttt 80
             ||||||||||||||||||||
Sbjct: 20409 tttgcaaaaacaacattttt 20428
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 350     catcgagtagtccttctggc 369
               ||||||||||||||||||||
Sbjct: 2170771 catcgagtagtccttctggc 2170790
to top
>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 350    catcgagtagtccttctggc 369
              ||||||||||||||||||||
Sbjct: 970532 catcgagtagtccttctggc 970551


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,769,312
Number of Sequences: 3902068
Number of extensions: 2769312
Number of successful extensions: 52974
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52633
Number of HSP's gapped (non-prelim): 338
length of query: 392
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 370
effective length of database: 17,147,199,772
effective search space: 6344463915640
effective search space used: 6344463915640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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