Clone Name | rbah61d16 |
---|---|
Clone Library Name | barley_pub |
>emb|AL672220.6| Human DNA sequence from clone RP11-17C2 on chromosome 1 Contains a CpG island, complete sequence Length = 104417 Score = 44.1 bits (22), Expect = 0.092 Identities = 22/22 (100%) Strand = Plus / Plus Query: 33 caaaaatgctaaacagggggca 54 |||||||||||||||||||||| Sbjct: 18032 caaaaatgctaaacagggggca 18053
>gb|AC165224.9| Mus musculus chromosome 5, clone RP24-389L10, complete sequence Length = 155046 Score = 40.1 bits (20), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 cacaagcagctccaggctcacgaa 113 |||||||||||| ||||||||||| Sbjct: 144774 cacaagcagctcaaggctcacgaa 144797
>gb|AC168279.3| Mus musculus 10 BAC RP23-345H24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 196860 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 cacaagcagctccaggctca 109 |||||||||||||||||||| Sbjct: 44463 cacaagcagctccaggctca 44444
>gb|AC118733.8| Mus musculus chromosome 10, clone RP24-170A20, complete sequence Length = 188335 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 cacaagcagctccaggctca 109 |||||||||||||||||||| Sbjct: 46432 cacaagcagctccaggctca 46451
>gb|AC015751.10| Homo sapiens chromosome 17, clone RP11-1J8, complete sequence Length = 104948 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ttcacaagcagctccaggct 107 |||||||||||||||||||| Sbjct: 78068 ttcacaagcagctccaggct 78087
>dbj|AK166420.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length enriched library, clone:G930015F23 product:hypothetical protein, full insert sequence Length = 650 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 cacaagcagctccaggctca 109 |||||||||||||||||||| Sbjct: 206 cacaagcagctccaggctca 187
>dbj|AK036704.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830165C13 product:unclassifiable, full insert sequence Length = 2401 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 cacaagcagctccaggctca 109 |||||||||||||||||||| Sbjct: 1509 cacaagcagctccaggctca 1490
>gb|AC110572.13| Mus musculus chromosome 5, clone RP23-316P20, complete sequence Length = 170850 Score = 40.1 bits (20), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 cacaagcagctccaggctcacgaa 113 |||||||||||| ||||||||||| Sbjct: 118938 cacaagcagctcaaggctcacgaa 118915
>dbj|AB103913.1| Equus caballus DNA, microsatellite TKY695 Length = 530 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 acaaaaatgctaaacagggg 51 |||||||||||||||||||| Sbjct: 40 acaaaaatgctaaacagggg 59
>gb|AC034259.7| Homo sapiens chromosome 11, clone RP11-138N3, complete sequence Length = 206192 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 acaagcagctccaggctca 109 ||||||||||||||||||| Sbjct: 60051 acaagcagctccaggctca 60033
>gb|AC108067.3| Homo sapiens BAC clone RP11-554D13 from 4, complete sequence Length = 122825 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 aggctcacaaaaatgctaa 44 ||||||||||||||||||| Sbjct: 871 aggctcacaaaaatgctaa 853
>gb|AC023301.5| Homo sapiens chromosome 18, clone RP11-713C5, complete sequence Length = 167190 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 14 acagctttcttcaggctca 32 ||||||||||||||||||| Sbjct: 150465 acagctttcttcaggctca 150447
>gb|AC004923.2| Homo sapiens PAC clone RP5-901A4 from 11, complete sequence Length = 94851 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 acaagcagctccaggctca 109 ||||||||||||||||||| Sbjct: 5246 acaagcagctccaggctca 5228
>gb|AC093778.3| Homo sapiens BAC clone RP11-167F5 from 4, complete sequence Length = 142526 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 aggctcacaaaaatgctaa 44 ||||||||||||||||||| Sbjct: 141397 aggctcacaaaaatgctaa 141379
>gb|AC007649.12| Homo sapiens 12 BAC RPCI11-90N16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168623 Score = 38.2 bits (19), Expect = 5.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 3 aatataactntacagctttctt 24 ||||||||| |||||||||||| Sbjct: 86981 aatataactatacagctttctt 86960
>gb|AC154616.2| Mus musculus BAC clone RP23-319O9 from 14, complete sequence Length = 179927 Score = 38.2 bits (19), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 74 agccttcacaaagcttcacaagc 96 ||||||||||||| ||||||||| Sbjct: 97968 agccttcacaaagattcacaagc 97990
>emb|AL356021.4|CNS05TDB Human chromosome 14 DNA sequence BAC R-783L4 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 184656 Score = 38.2 bits (19), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 18 ctttcttcaggctcacaaaaatg 40 ||||| ||||||||||||||||| Sbjct: 118163 ctttcctcaggctcacaaaaatg 118141 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,001,732 Number of Sequences: 3902068 Number of extensions: 1001732 Number of successful extensions: 69679 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69653 Number of HSP's gapped (non-prelim): 26 length of query: 123 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 102 effective length of database: 17,151,101,840 effective search space: 1749412387680 effective search space used: 1749412387680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)