ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61d15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAG1_BOVIN (Q29432) Pregnancy-associated glycoprotein 1 precurso... 28 8.1
2CONS_ARATH (Q39057) Zinc finger protein CONSTANS 28 8.1

>PAG1_BOVIN (Q29432) Pregnancy-associated glycoprotein 1 precursor (EC|
           3.4.23.-) (PAG 1) (Pregnancy-specific protein B) (PSP-B)
          Length = 380

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 170 LPSSDNNALPTYLFILRAPIARVPGATYIHKIDR 271
           +P S+ N LP+ +F +      VPG  YI K DR
Sbjct: 301 VPCSEVNTLPSIVFTINGINYPVPGRAYILKDDR 334



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>CONS_ARATH (Q39057) Zinc finger protein CONSTANS|
          Length = 373

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 313 RSASIKFDNSRAHQQKNMELLTFSCSRGSSGT 408
           R   +K + SR HQ  N +   F+   GSSGT
Sbjct: 212 RVVPLKLEESRGHQCHNQQNFQFNIKYGSSGT 243


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,308,927
Number of Sequences: 219361
Number of extensions: 1285803
Number of successful extensions: 2902
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2902
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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