Clone Name | rbah61d09 |
---|---|
Clone Library Name | barley_pub |
>LU_HUMAN (P50895) Lutheran blood group glycoprotein precursor (B-CAM cell| surface glycoprotein) (Auberger B antigen) (F8/G253 antigen) Length = 628 Score = 33.1 bits (74), Expect = 0.43 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 494 RPKQAHALPPPVHQGLRRAGSQHPEGRGRHLGGVQGDVK 378 R ++ PPP GL +GS+ PE G +GG G + Sbjct: 580 RQRREKGAPPPGEPGLSHSGSEQPEQTGLLMGGASGGAR 618
>PACN2_RAT (Q9QY17) Protein kinase C and casein kinase substrate in neurons 2| protein (Synaptic dynamin-associated protein II) (Syndapin 2) (Syndapin-II) (SdpII) Length = 488 Score = 32.7 bits (73), Expect = 0.56 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 7/64 (10%) Frame = -1 Query: 466 HLSTKVS-----GEQARNIQKE--EEDIWAGFKETLKKLDQLPKKEKPSVFQQRMKSIDR 308 HL K S E+ +N QKE + + GFKET + D K +KP + +++K +D Sbjct: 97 HLEVKASLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKP--WAKKLKEVDA 154 Query: 307 AVKA 296 A KA Sbjct: 155 AKKA 158
>IF39_HUMAN (P55884) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1 homolog) (hPrt1) Length = 814 Score = 32.7 bits (73), Expect = 0.56 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = -3 Query: 488 KQAHALPPPVHQGLRRAGSQHPEGRGRHLGGVQGDVKEVGPAPQKR 351 +Q A PPP LR AG PE G + + E GP P+ R Sbjct: 22 QQPAAEPPPAEGLLRPAGPGAPEAAGTEASSEEVGIAEAGPEPEVR 67
>RS5_METJA (P54045) 30S ribosomal protein S5P| Length = 217 Score = 32.0 bits (71), Expect = 0.95 Identities = 19/55 (34%), Positives = 28/55 (50%) Frame = -3 Query: 416 RGRHLGGVQGDVKEVGPAPQKRETKCLSAAHEIYRPCGQGCGLWIFQADNCGCGS 252 R ++G +G KEVGPA + K ++ A + +GCG W CGCG+ Sbjct: 80 RNGYVGVGKGKAKEVGPAIR----KAIAQAKKNIIRVKRGCGSW-----ECGCGT 125
>PACN1_HUMAN (Q9BY11) Protein kinase C and casein kinase substrate in neurons| protein 1 Length = 444 Score = 31.6 bits (70), Expect = 1.2 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Frame = -1 Query: 442 EQARNIQKE--EEDIWAGFKETLKKLDQLPKKEKPSVFQQRMKSIDRAVKA 296 E+ +N QK+ + I GFKET + D K +KP + ++MK ++ A KA Sbjct: 111 EKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKP--WAKKMKELEAAKKA 159
>RKPI_RHIME (Q52938) Capsular polysaccharide biosynthesis protein rkpI| Length = 538 Score = 31.6 bits (70), Expect = 1.2 Identities = 16/44 (36%), Positives = 26/44 (59%) Frame = +2 Query: 275 LERSIDHSLDRTVDRFHALLKDTWFLFFGELVQLL*RLLEPRPD 406 LE+S D +L + +D + L + WF+F+G+ LL +P PD Sbjct: 449 LEQS-DAALKQLIDGLNKLDRPVWFVFYGDHAPLLKSFADPFPD 491
>PACN1_RAT (Q9Z0W5) Protein kinase C and casein kinase substrate in neurons| protein 1 (Synaptic, dynamin-associated protein I) (Syndapin 1) (Syndapin-I) (SdpI) (Dynamin proline-rich domain-interacting protein) (Dynamin PRD-interacting protein) Length = 441 Score = 31.6 bits (70), Expect = 1.2 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Frame = -1 Query: 442 EQARNIQKE--EEDIWAGFKETLKKLDQLPKKEKPSVFQQRMKSIDRAVKA 296 E+ +N QK+ + I GFKET + D K +KP + ++MK ++ A KA Sbjct: 108 EKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKP--WAKKMKELEAAKKA 156
>PACN1_MOUSE (Q61644) Protein kinase C and casein kinase substrate in neurons| protein 1 Length = 441 Score = 31.6 bits (70), Expect = 1.2 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Frame = -1 Query: 442 EQARNIQKE--EEDIWAGFKETLKKLDQLPKKEKPSVFQQRMKSIDRAVKA 296 E+ +N QK+ + I GFKET + D K +KP + ++MK ++ A KA Sbjct: 108 EKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKP--WAKKMKELEAAKKA 156
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 27.7 bits (60), Expect(2) = 1.5 Identities = 24/71 (33%), Positives = 27/71 (38%), Gaps = 9/71 (12%) Frame = -3 Query: 428 HPEGRGR---HLGGVQGDVKEVGPAPQKRETKCLSAAHEIYRPCGQGCG------LWIFQ 276 +PEG R L G G V E P + C H CGQ C + Q Sbjct: 769 NPEGCTRCSCDLRGTLGGVAECQPGTGQ----CFCKPHV----CGQACASCKDGFFGLDQ 820 Query: 275 ADNCGCGSCYC 243 AD GC SC C Sbjct: 821 ADYFGCRSCRC 831 Score = 21.9 bits (45), Expect(2) = 1.5 Identities = 9/16 (56%), Positives = 10/16 (62%) Frame = -2 Query: 489 QAGSCAPATCPPRSPA 442 +AGSC PA P PA Sbjct: 721 EAGSCHPAGLAPVDPA 736
>PACN2_MOUSE (Q9WVE8) Protein kinase C and casein kinase substrate in neurons| protein 2 Length = 486 Score = 31.2 bits (69), Expect = 1.6 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 7/64 (10%) Frame = -1 Query: 466 HLSTKVS-----GEQARNIQKE--EEDIWAGFKETLKKLDQLPKKEKPSVFQQRMKSIDR 308 HL K S E+ +N QKE + + GFKET + D K +KP + +++K ++ Sbjct: 97 HLEVKASLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKP--WAKKLKEVEA 154 Query: 307 AVKA 296 A KA Sbjct: 155 AKKA 158
>PACN2_HUMAN (Q9UNF0) Protein kinase C and casein kinase substrate in neurons| protein 2 Length = 486 Score = 31.2 bits (69), Expect = 1.6 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 7/64 (10%) Frame = -1 Query: 466 HLSTKVS-----GEQARNIQKE--EEDIWAGFKETLKKLDQLPKKEKPSVFQQRMKSIDR 308 HL K S E+ +N QKE + + GFKET + D K +KP + +++K ++ Sbjct: 97 HLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKP--WAKKLKEVEA 154 Query: 307 AVKA 296 A KA Sbjct: 155 AKKA 158
>Y068_MYCPN (P75048) Hypothetical protein MG055 homolog (D09_orf125)| Length = 125 Score = 31.2 bits (69), Expect = 1.6 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Frame = -1 Query: 469 RHLSTKVSGEQARNIQKEEEDIWAGFKETLKKLDQLPKKEKP--SVFQQRMKSIDRAVKA 296 R L K+ ++A KE++D + K+T KK+DQ PK + P F ID+ V Sbjct: 29 RQLKAKIEAKKA----KEKQD--SKTKDTDKKVDQTPKVKVPFTKKFSNLWFGIDKEVNK 82 Query: 295 VVYGSFKLTIVV 260 +V+ + K I + Sbjct: 83 IVWVTSKKLITI 94
>Y002_NPVAC (P24655) Hypothetical 37.8 kDa protein in PTP-CTL intergenic region| (ORF2) Length = 328 Score = 30.8 bits (68), Expect = 2.1 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = -1 Query: 439 QARNIQKEEEDIWAGFKETLKKLDQLPKKEKPSVFQQRMKSIDRAVKAVVYGSFK 275 Q + + ++ GF+ET++K D++ +K+ V K +D + +AV Y + K Sbjct: 192 QVTRVMTDLNRMYTGFQETMQKKDEIMQKKDAQVTDLVAKVVDLSDRAVQYPADK 246
>PACN2_CHICK (O13154) Protein kinase C and casein kinase substrate in neurons| protein 2 (Focal adhesion protein of 52 kDa) (FAP52) Length = 448 Score = 30.4 bits (67), Expect = 2.8 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Frame = -1 Query: 442 EQARNIQKE--EEDIWAGFKETLKKLDQLPKKEKPSVFQQRMKSIDRAVKA 296 E+ +N QKE + + GFKET + D K +KP + +++K ++ A KA Sbjct: 110 EKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKP--WAKKLKEVEAAKKA 158
>HAND1_SHEEP (Q28555) Heart- and neural crest derivatives-expressed protein 1| (Extraembryonic tissues, heart, autonomic nervous system and neural crest derivatives-expressed protein 1) (eHAND) Length = 204 Score = 29.6 bits (65), Expect = 4.7 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 7/62 (11%) Frame = -3 Query: 470 PPPVHQGLRRAGSQHPE-------GRGRHLGGVQGDVKEVGPAPQKRETKCLSAAHEIYR 312 PPP A S P+ GR LGG G K GP ++R T+ +++A R Sbjct: 65 PPPTTAVRAAAASYGPDARPGQSPGRLEALGGRLGRRKGSGPKKERRRTESINSAFAELR 124 Query: 311 PC 306 C Sbjct: 125 EC 126
>STC2_STAAU (P17855) Staphylocoagulase precursor| Length = 715 Score = 29.3 bits (64), Expect = 6.2 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Frame = -3 Query: 470 PPPVHQGLRRAGSQ---HPEGRGRHLGGVQGDVKEVGPAPQKRET 345 P P+ +GL + S+ P+G L G+QG+ ++ PQ ET Sbjct: 411 PNPILEGLEGSSSKLEIKPQGTESTLKGIQGESSDIEVKPQATET 455
>TIF1B_MOUSE (Q62318) Transcription intermediary factor 1-beta (TIF1-beta)| (Tripartite motif protein 28) (KRAB-A-interacting protein) (KRIP-1) Length = 834 Score = 29.3 bits (64), Expect = 6.2 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Frame = -3 Query: 203 TKENQ*RQYGEMRTKDGRPACFM-FNYHDPTIFFCFTCFVFPSYGNKYLRCPLLQLHVHP 27 TK++ R G +T+DG + + H+P + FC +C L C QL+ H Sbjct: 188 TKDHTVRSTGPAKTRDGERTVYCNVHKHEPLVLFCESC--------DTLTCRDCQLNAHK 239 Query: 26 XTQ 18 Q Sbjct: 240 DHQ 242
>STC1_STAAU (P07767) Staphylocoagulase precursor| Length = 658 Score = 29.3 bits (64), Expect = 6.2 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Frame = -3 Query: 470 PPPVHQGLRRAGSQ---HPEGRGRHLGGVQGDVKEVGPAPQKRET 345 P P+ +GL + S+ P+G L G+QG+ ++ PQ ET Sbjct: 408 PNPILEGLEGSSSKLEIKPQGTESTLKGIQGESSDIEVKPQATET 452
>RHG25_HUMAN (P42331) Rho-GTPase-activating protein 25| Length = 638 Score = 29.3 bits (64), Expect = 6.2 Identities = 12/46 (26%), Positives = 30/46 (65%) Frame = -1 Query: 442 EQARNIQKEEEDIWAGFKETLKKLDQLPKKEKPSVFQQRMKSIDRA 305 EQ +N++KE D+WA ++L++ +K+K + + +++++R+ Sbjct: 566 EQIKNLEKENYDVWAKVVRLNEELEK--EKKKSAALEISLRNMERS 609
>SC5A1_HUMAN (P13866) Sodium/glucose cotransporter 1 (Na(+)/glucose| cotransporter 1) (High affinity sodium-glucose cotransporter) Length = 664 Score = 29.3 bits (64), Expect = 6.2 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = -1 Query: 460 STKVSGEQARNIQKEEEDIWAGFKETLKKLDQLPKKEK 347 S + S E+ ++ EEE+I G KET++ Q+P+K+K Sbjct: 562 SLRNSKEERIDLDAEEENIQEGPKETIEIETQVPEKKK 599
>RS5_METVA (P14036) 30S ribosomal protein S5P| Length = 225 Score = 28.9 bits (63), Expect = 8.1 Identities = 19/52 (36%), Positives = 24/52 (46%) Frame = -3 Query: 407 HLGGVQGDVKEVGPAPQKRETKCLSAAHEIYRPCGQGCGLWIFQADNCGCGS 252 ++G G KEVGPA + K ++ A GCG W CGCGS Sbjct: 91 YVGVGMGKSKEVGPAIR----KAIAQAKLSLIKVRVGCGSW-----ECGCGS 133
>FZD8_MOUSE (Q61091) Frizzled 8 precursor (Frizzled-8) (Fz-8) (mFz8)| Length = 685 Score = 28.9 bits (63), Expect = 8.1 Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 1/70 (1%) Frame = -3 Query: 500 PARPKQAHALPPPVHQGLRRAGSQHPEG-RGRHLGGVQGDVKEVGPAPQKRETKCLSAAH 324 P+ P++ PPP Q +G P G R H GG + AP R K Sbjct: 161 PSPPRRLPPPPPPGEQPPSGSGHSRPPGARPPHRGGSSRGSGDAAAAPPSRGGKARPPGG 220 Query: 323 EIYRPCGQGC 294 PC GC Sbjct: 221 GA-APCEPGC 229
>PACN2_XENLA (Q9DDA9) Protein kinase C and casein kinase substrate in neurons| protein 2 (x-PACSIN2) Length = 477 Score = 28.9 bits (63), Expect = 8.1 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Frame = -1 Query: 442 EQARNIQKE--EEDIWAGFKETLKKLDQLPKKEKPSVFQQRMKSIDRAVKA 296 E+ +N QKE + + GFKET + D K +KP + +++K ++ A K+ Sbjct: 110 EKIKNWQKEAFHKQMMGGFKETKEADDGFRKAQKP--WAKKLKEVEAAKKS 158
>MEGF6_MOUSE (Q80V70) Multiple epidermal growth factor-like domains 6 (EGF-like| domain-containing protein 3) (Multiple EGF-like domain protein 3) (Fragment) Length = 656 Score = 28.9 bits (63), Expect = 8.1 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +1 Query: 1 CKLXCNCVXGWTCSWRRGHLR 63 C+L C+C+ G TC GH R Sbjct: 171 CRLNCSCLNGGTCDRLTGHCR 191 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,675,327 Number of Sequences: 219361 Number of extensions: 1689871 Number of successful extensions: 5871 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5560 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5867 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)