>Y2766_ARATH (O80934) Protein At2g37660, chloroplast precursor|
          Length = 325

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
 Frame = -1

Query: 517 PXSIMNLFGVLKYKKMAEDFVRNSGIPFTIIRPGRLTDGPYTSYDLNTLVKATAGERRAV 338
           P + +    +L +K+ AE ++ +SGIP+TIIR G L D                G  R +
Sbjct: 214 PLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQD--------------KDGGIREL 259

Query: 337 EIGQGDKLVGEASRLV----VAEACIQALDIESTQGKIYEISSVKGEGPGSDQEKWKQLF 170
            +G+ D+L+   +R +    VAE C+QAL +E  + K  +++S K EG G+  + +K LF
Sbjct: 260 LVGKDDELLETETRTIARADVAEVCVQALQLEEAKFKALDLAS-KPEGTGTPTKDFKALF 318

>Y5224_ARATH (Q94EG6) Protein At5g02240|
          Length = 253

 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
 Frame = -1

Query: 490 VLKYKKMAEDFVRNSGIPFTIIRPGRLTDGPYTSYDLNTLVKATAGERRAVEIGQGDKLV 311
           +L +K+ AE ++ +SG P+TIIR G L D                G  R + +G+ D+L+
Sbjct: 151 ILVWKRKAEQYLADSGTPYTIIRAGGLLD--------------KEGGVRELLVGKDDELL 196

Query: 310 GEASRLV----VAEACIQALDIESTQGKIYEISSVKGEGPGSDQEKWKQLFAAAES 155
              ++ V    VAE CIQAL  E  + K +++ S K EG  +  + +K LF+   S
Sbjct: 197 QTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGS-KPEGTSTPTKDFKALFSQVTS 251

>YTFG_ECOLI (P39315) Hypothetical protein ytfG|
          Length = 286

 Score = 35.4 bits (80), Expect = 0.098
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = -1

Query: 466 EDFVRNSGIPFTIIRPGRLTDGPYTSYDLNTLVKATAGERRAVEIGQ-GDKLVGEASRLV 290
           E  + +SGI +T++R G         Y  N L  A A     V IG  GD  +  A+R  
Sbjct: 122 EKMLADSGIVYTLLRNGW--------YSENYLASAPAALEHGVFIGAAGDGKIASATRAD 173

Query: 289 VAEACIQALDIESTQGKIYEIS 224
            A A  + +     +GK+YE++
Sbjct: 174 YAAAAARVISEAGHEGKVYELA 195

>TVA1_MOUSE (P01738) T-cell receptor alpha chain V region PHDS58 precursor|
          Length = 130

 Score = 35.4 bits (80), Expect = 0.098
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 103 LLPSYGIHYSLRQSATSSIQQLQIAASISPGRSQVLRPSPN*SRI-FFLG*IQYPKLGYM 279
           LLP  GIH+ LR +   S+ Q     ++S G S  LR   + S   +    +QYP+ G  
Sbjct: 5   LLPVLGIHFVLRDAQAQSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQ 64

Query: 280 LL 285
           LL
Sbjct: 65  LL 66

>GLI3_XENLA (Q91660) Zinc finger protein GLI3 (Neural-specific DNA-binding|
           protein xGLI3) (xGLI-3)
          Length = 1569

 Score = 32.7 bits (73), Expect = 0.64
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +3

Query: 210 SPFTELISYIFPWVDSISKAWIHASATTNLLASPTSLSPWPISTARLSPA 359
           SPF+    YI P++D I    +H+S + +++++   LSP  +  A +SPA
Sbjct: 189 SPFSPPHPYISPYMDYIRS--LHSSPSLSMISAARGLSPTDVPHAGISPA 236

>UGPA_DICDI (P08800) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)|
           (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase)
          Length = 511

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
 Frame = -2

Query: 375 HLLRLQLEKDEQLR*AKVTSLWEKRADWWWQKHVSKL---------WILNLPKEKYTRLV 223
           HLL L   K E+L+  K   LW     W   K VS L         WI+N P E +  +V
Sbjct: 310 HLLELSQVKPEKLKIFKDFKLWNTNNIWVNLKSVSNLIKEDKLDLDWIVNYPLENHKAMV 369

Query: 222 R 220
           +
Sbjct: 370 Q 370

>SYV_CHLTR (O84304) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 939

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 15/79 (18%)
 Frame = -1

Query: 400 PYTSYDLNTLVKATAGERRAVEIGQGDKLVGEASRLVVAEACIQA-----LDIESTQG-- 242
           PY +  L   +KAT G    VE G+GD + G A  ++ +EAC+ A     + +   QG  
Sbjct: 732 PYITETLFQKLKATLG---TVENGKGDSVTGHAVSMLRSEACMVAEYPKPIHVAFPQGLR 788

Query: 241 --------KIYEISSVKGE 209
                    +Y I +++GE
Sbjct: 789 ESFGIAERLVYTIRNIRGE 807

>GLI3_PANTR (Q5IS56) Zinc finger protein GLI3|
          Length = 1580

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +3

Query: 210 SPFTELISYIFPWVDSISKAWIHASATTNLLASPTSLSPWPISTARLSPA 359
           SPF+    YI P++D I    +H+S + +++++   LSP     A +SPA
Sbjct: 188 SPFSPPHPYINPYMDYIRS--LHSSPSLSMISATRGLSPTDAPHAGVSPA 235

>GLI3_HUMAN (P10071) Zinc finger protein GLI3|
          Length = 1580

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +3

Query: 210 SPFTELISYIFPWVDSISKAWIHASATTNLLASPTSLSPWPISTARLSPA 359
           SPF+    YI P++D I    +H+S + +++++   LSP     A +SPA
Sbjct: 188 SPFSPPHPYINPYMDYIRS--LHSSPSLSMISATRGLSPTDAPHAGVSPA 235

>GLI3_MOUSE (Q61602) Zinc finger protein GLI3|
          Length = 1596

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 210 SPFTELISYIFPWVDSISKAWIHASATTNLLASPTSLSPWPISTARLSPA 359
           SPF+    YI P++D I    +H S + +++++   LSP     A +SPA
Sbjct: 188 SPFSPPHPYINPYMDYIRS--LHCSPSLSMISAARGLSPTDAPHAGVSPA 235

>XKR5_MOUSE (Q5GH66) XK-related protein 5|
          Length = 676

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 391 SYDLNTLVKATAGERRAVEIGQGDKLVGEAS 299
           SY+L +L KA + E+   E+G G++  GE+S
Sbjct: 368 SYELTSLDKAPSPEQNTAEVGLGEQRSGESS 398

>KCY_ARCFU (O28379) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidine|
           monophosphate kinase) (CMP kinase)
          Length = 180

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 309 EKRADWWWQKHVS-KLWILNLPKEKYTRLVR*RAKDLGATRR 187
           E R   W+ K+   K+WI   P+ +Y+R+ +   KDL   R+
Sbjct: 80  EGRLSGWFVKNADLKVWIFADPEVRYSRIAKREGKDLTVVRQ 121

>GAT1B_XENLA (P23768) GATA-binding factor 1-B (Transcription factor xGATA-1B)|
          Length = 364

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +1

Query: 100 LLLPSYGIHYSLRQSATSSIQQLQIAASISPGRSQVLRPSP-N*SRIFFLG*IQYPKLGY 276
           L +   GI    R+ ++ S ++ Q+     P ++ V  PSP     + F G  Q P +G+
Sbjct: 271 LTMKKEGIQTRNRKVSSKSKKKKQLENPFEPPKTGVEEPSPYQYGPLLFHG--QMPTMGH 328

Query: 277 MLLPPPICSLLPQACH 324
           ML PP      P+  H
Sbjct: 329 MLSPPHHFLQSPRMSH 344


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,294,210
Number of Sequences: 219361
Number of extensions: 1648724
Number of successful extensions: 4301
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4297
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)