Clone Name | rbah61d03 |
---|---|
Clone Library Name | barley_pub |
>Y2766_ARATH (O80934) Protein At2g37660, chloroplast precursor| Length = 325 Score = 59.3 bits (142), Expect = 6e-09 Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 4/120 (3%) Frame = -1 Query: 517 PXSIMNLFGVLKYKKMAEDFVRNSGIPFTIIRPGRLTDGPYTSYDLNTLVKATAGERRAV 338 P + + +L +K+ AE ++ +SGIP+TIIR G L D G R + Sbjct: 214 PLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQD--------------KDGGIREL 259 Query: 337 EIGQGDKLVGEASRLV----VAEACIQALDIESTQGKIYEISSVKGEGPGSDQEKWKQLF 170 +G+ D+L+ +R + VAE C+QAL +E + K +++S K EG G+ + +K LF Sbjct: 260 LVGKDDELLETETRTIARADVAEVCVQALQLEEAKFKALDLAS-KPEGTGTPTKDFKALF 318
>Y5224_ARATH (Q94EG6) Protein At5g02240| Length = 253 Score = 55.5 bits (132), Expect = 9e-08 Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 4/116 (3%) Frame = -1 Query: 490 VLKYKKMAEDFVRNSGIPFTIIRPGRLTDGPYTSYDLNTLVKATAGERRAVEIGQGDKLV 311 +L +K+ AE ++ +SG P+TIIR G L D G R + +G+ D+L+ Sbjct: 151 ILVWKRKAEQYLADSGTPYTIIRAGGLLD--------------KEGGVRELLVGKDDELL 196 Query: 310 GEASRLV----VAEACIQALDIESTQGKIYEISSVKGEGPGSDQEKWKQLFAAAES 155 ++ V VAE CIQAL E + K +++ S K EG + + +K LF+ S Sbjct: 197 QTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGS-KPEGTSTPTKDFKALFSQVTS 251
>YTFG_ECOLI (P39315) Hypothetical protein ytfG| Length = 286 Score = 35.4 bits (80), Expect = 0.098 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Frame = -1 Query: 466 EDFVRNSGIPFTIIRPGRLTDGPYTSYDLNTLVKATAGERRAVEIGQ-GDKLVGEASRLV 290 E + +SGI +T++R G Y N L A A V IG GD + A+R Sbjct: 122 EKMLADSGIVYTLLRNGW--------YSENYLASAPAALEHGVFIGAAGDGKIASATRAD 173 Query: 289 VAEACIQALDIESTQGKIYEIS 224 A A + + +GK+YE++ Sbjct: 174 YAAAAARVISEAGHEGKVYELA 195
>TVA1_MOUSE (P01738) T-cell receptor alpha chain V region PHDS58 precursor| Length = 130 Score = 35.4 bits (80), Expect = 0.098 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +1 Query: 103 LLPSYGIHYSLRQSATSSIQQLQIAASISPGRSQVLRPSPN*SRI-FFLG*IQYPKLGYM 279 LLP GIH+ LR + S+ Q ++S G S LR + S + +QYP+ G Sbjct: 5 LLPVLGIHFVLRDAQAQSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQ 64 Query: 280 LL 285 LL Sbjct: 65 LL 66
>GLI3_XENLA (Q91660) Zinc finger protein GLI3 (Neural-specific DNA-binding| protein xGLI3) (xGLI-3) Length = 1569 Score = 32.7 bits (73), Expect = 0.64 Identities = 17/50 (34%), Positives = 30/50 (60%) Frame = +3 Query: 210 SPFTELISYIFPWVDSISKAWIHASATTNLLASPTSLSPWPISTARLSPA 359 SPF+ YI P++D I +H+S + +++++ LSP + A +SPA Sbjct: 189 SPFSPPHPYISPYMDYIRS--LHSSPSLSMISAARGLSPTDVPHAGISPA 236
>UGPA_DICDI (P08800) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)| (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) Length = 511 Score = 32.0 bits (71), Expect = 1.1 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 9/61 (14%) Frame = -2 Query: 375 HLLRLQLEKDEQLR*AKVTSLWEKRADWWWQKHVSKL---------WILNLPKEKYTRLV 223 HLL L K E+L+ K LW W K VS L WI+N P E + +V Sbjct: 310 HLLELSQVKPEKLKIFKDFKLWNTNNIWVNLKSVSNLIKEDKLDLDWIVNYPLENHKAMV 369 Query: 222 R 220 + Sbjct: 370 Q 370
>SYV_CHLTR (O84304) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 939 Score = 32.0 bits (71), Expect = 1.1 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 15/79 (18%) Frame = -1 Query: 400 PYTSYDLNTLVKATAGERRAVEIGQGDKLVGEASRLVVAEACIQA-----LDIESTQG-- 242 PY + L +KAT G VE G+GD + G A ++ +EAC+ A + + QG Sbjct: 732 PYITETLFQKLKATLG---TVENGKGDSVTGHAVSMLRSEACMVAEYPKPIHVAFPQGLR 788 Query: 241 --------KIYEISSVKGE 209 +Y I +++GE Sbjct: 789 ESFGIAERLVYTIRNIRGE 807
>GLI3_PANTR (Q5IS56) Zinc finger protein GLI3| Length = 1580 Score = 30.4 bits (67), Expect = 3.2 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +3 Query: 210 SPFTELISYIFPWVDSISKAWIHASATTNLLASPTSLSPWPISTARLSPA 359 SPF+ YI P++D I +H+S + +++++ LSP A +SPA Sbjct: 188 SPFSPPHPYINPYMDYIRS--LHSSPSLSMISATRGLSPTDAPHAGVSPA 235
>GLI3_HUMAN (P10071) Zinc finger protein GLI3| Length = 1580 Score = 30.4 bits (67), Expect = 3.2 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +3 Query: 210 SPFTELISYIFPWVDSISKAWIHASATTNLLASPTSLSPWPISTARLSPA 359 SPF+ YI P++D I +H+S + +++++ LSP A +SPA Sbjct: 188 SPFSPPHPYINPYMDYIRS--LHSSPSLSMISATRGLSPTDAPHAGVSPA 235
>GLI3_MOUSE (Q61602) Zinc finger protein GLI3| Length = 1596 Score = 30.0 bits (66), Expect = 4.1 Identities = 17/50 (34%), Positives = 28/50 (56%) Frame = +3 Query: 210 SPFTELISYIFPWVDSISKAWIHASATTNLLASPTSLSPWPISTARLSPA 359 SPF+ YI P++D I +H S + +++++ LSP A +SPA Sbjct: 188 SPFSPPHPYINPYMDYIRS--LHCSPSLSMISAARGLSPTDAPHAGVSPA 235
>XKR5_MOUSE (Q5GH66) XK-related protein 5| Length = 676 Score = 29.6 bits (65), Expect = 5.4 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = -1 Query: 391 SYDLNTLVKATAGERRAVEIGQGDKLVGEAS 299 SY+L +L KA + E+ E+G G++ GE+S Sbjct: 368 SYELTSLDKAPSPEQNTAEVGLGEQRSGESS 398
>KCY_ARCFU (O28379) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidine| monophosphate kinase) (CMP kinase) Length = 180 Score = 29.3 bits (64), Expect = 7.1 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -2 Query: 309 EKRADWWWQKHVS-KLWILNLPKEKYTRLVR*RAKDLGATRR 187 E R W+ K+ K+WI P+ +Y+R+ + KDL R+ Sbjct: 80 EGRLSGWFVKNADLKVWIFADPEVRYSRIAKREGKDLTVVRQ 121
>GAT1B_XENLA (P23768) GATA-binding factor 1-B (Transcription factor xGATA-1B)| Length = 364 Score = 28.9 bits (63), Expect = 9.2 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Frame = +1 Query: 100 LLLPSYGIHYSLRQSATSSIQQLQIAASISPGRSQVLRPSP-N*SRIFFLG*IQYPKLGY 276 L + GI R+ ++ S ++ Q+ P ++ V PSP + F G Q P +G+ Sbjct: 271 LTMKKEGIQTRNRKVSSKSKKKKQLENPFEPPKTGVEEPSPYQYGPLLFHG--QMPTMGH 328 Query: 277 MLLPPPICSLLPQACH 324 ML PP P+ H Sbjct: 329 MLSPPHHFLQSPRMSH 344 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,294,210 Number of Sequences: 219361 Number of extensions: 1648724 Number of successful extensions: 4301 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4195 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4297 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)