ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 137 4e-29
2gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare str... 137 4e-29
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 137 4e-29
4ref|NM_119302.3| Arabidopsis thaliana unknown protein AT4G31530 ... 48 0.030
5emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BA... 48 0.030
6emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, ... 48 0.030
7gb|BT008347.1| Arabidopsis thaliana At4g31530 mRNA, complete cds 48 0.030
8emb|BX828210.1|CNS0A2WT Arabidopsis thaliana Full-length cDNA Co... 48 0.030
9emb|BX827010.1|CNS0A35O Arabidopsis thaliana Full-length cDNA Co... 48 0.030
10emb|BX827371.1|CNS0A2DI Arabidopsis thaliana Full-length cDNA Co... 48 0.030
11dbj|AK117306.1| Arabidopsis thaliana At4g31530 mRNA for unknown ... 48 0.030
12dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 46 0.12
13dbj|AP003127.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 46 0.12
14emb|BX537261.7| Zebrafish DNA sequence from clone DKEY-73F6 in l... 42 1.8
15emb|BX005250.7| Zebrafish DNA sequence from clone DKEY-35H6 in l... 42 1.8
16gb|AC120871.12| Mus musculus chromosome 16, clone RP23-121E8, co... 40 7.2
17gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.2
18gb|AC137624.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.2
19emb|CT010512.8| Mouse DNA sequence from clone RP23-283M18 on chr... 40 7.2
20emb|CR407582.7| Zebrafish DNA sequence from clone DKEY-224L8 in ... 40 7.2
21gb|AC101910.20| Mus musculus chromosome 7, clone RP24-327I20, co... 40 7.2
22emb|CR388046.14| Zebrafish DNA sequence from clone DKEY-50E6 in ... 40 7.2
23dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
24gb|AC156599.2| Laccaria bicolor clone JGIAHZW-3X, complete sequence 40 7.2
25dbj|BS000227.1| Pan troglodytes chromosome 22 clone:PTB-059D22, ... 40 7.2
26emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-7... 40 7.2
27emb|AL669926.6| Mouse DNA sequence from clone RP23-74K21 on chro... 40 7.2 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  137 bits (69), Expect = 4e-29
 Identities = 102/113 (90%)
 Strand = Plus / Plus

                                                                            
Query: 214      ccttcaccgaactaatctcgtatatttttccttgggtagattcaatatccaaagcttgga 273
                ||||||||||  | ||||||||||||| |||||  ||  |||||||||||||||||||||
Sbjct: 13583754 ccttcaccgagttgatctcgtatatttgtccttctgtgaattcaatatccaaagcttgga 13583813

                                                                     
Query: 274      tacatgcttctgccaccaccaatctgctcgcttctcccacaagcttgtcacct 326
                |||| |||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 13583814 tacaggcttctgccaccaccagtctgcttgcttctcccacaagcttgtcacct 13583866



 Score =  123 bits (62), Expect = 6e-25
 Identities = 80/86 (93%)
 Strand = Plus / Plus

                                                                            
Query: 426      atgatggtgaaaggtatgcctgaattacggacaaagtcctctgccatcttcttgtattta 485
                ||||||||||||||||||||||| ||  |||||||||||||||||||||||||||| |||
Sbjct: 13584119 atgatggtgaaaggtatgcctgagttctggacaaagtcctctgccatcttcttgtactta 13584178

                                          
Query: 486      agcacaccaaataggttcatgatact 511
                ||||||||||| || |||||||||||
Sbjct: 13584179 agcacaccaaacagattcatgatact 13584204



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 79/89 (88%)
 Strand = Plus / Plus

                                                                            
Query: 337      caactgctcgtctttctccagctgtagccttaacaagtgtgttcaggtcataggaagtgt 396
                ||||||| |||||||||||||| ||||| | || ||||||||| |||||||| |||||||
Sbjct: 13583956 caactgcccgtctttctccagcagtagcttgaagaagtgtgttaaggtcataagaagtgt 13584015

                                             
Query: 397      agggcccatctgttaatctccccggcctg 425
                |||| ||||| ||||||||||| ||||||
Sbjct: 13584016 agggtccatcggttaatctcccaggcctg 13584044



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                           
Query: 174      agctgcttccatttctcctggtcgctcccaggtccttcgccct 216
                |||| ||||||||||||  ||||||||||||||||||||||||
Sbjct: 13583551 agctccttccatttctctgggtcgctcccaggtccttcgccct 13583593
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>gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0005A11, from chromosome 3, complete sequence
          Length = 168219

 Score =  137 bits (69), Expect = 4e-29
 Identities = 102/113 (90%)
 Strand = Plus / Plus

                                                                          
Query: 214    ccttcaccgaactaatctcgtatatttttccttgggtagattcaatatccaaagcttgga 273
              ||||||||||  | ||||||||||||| |||||  ||  |||||||||||||||||||||
Sbjct: 143645 ccttcaccgagttgatctcgtatatttgtccttctgtgaattcaatatccaaagcttgga 143704

                                                                   
Query: 274    tacatgcttctgccaccaccaatctgctcgcttctcccacaagcttgtcacct 326
              |||| |||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 143705 tacaggcttctgccaccaccagtctgcttgcttctcccacaagcttgtcacct 143757



 Score =  123 bits (62), Expect = 6e-25
 Identities = 80/86 (93%)
 Strand = Plus / Plus

                                                                          
Query: 426    atgatggtgaaaggtatgcctgaattacggacaaagtcctctgccatcttcttgtattta 485
              ||||||||||||||||||||||| ||  |||||||||||||||||||||||||||| |||
Sbjct: 144010 atgatggtgaaaggtatgcctgagttctggacaaagtcctctgccatcttcttgtactta 144069

                                        
Query: 486    agcacaccaaataggttcatgatact 511
              ||||||||||| || |||||||||||
Sbjct: 144070 agcacaccaaacagattcatgatact 144095



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 79/89 (88%)
 Strand = Plus / Plus

                                                                          
Query: 337    caactgctcgtctttctccagctgtagccttaacaagtgtgttcaggtcataggaagtgt 396
              ||||||| |||||||||||||| ||||| | || ||||||||| |||||||| |||||||
Sbjct: 143847 caactgcccgtctttctccagcagtagcttgaagaagtgtgttaaggtcataagaagtgt 143906

                                           
Query: 397    agggcccatctgttaatctccccggcctg 425
              |||| ||||| ||||||||||| ||||||
Sbjct: 143907 agggtccatcggttaatctcccaggcctg 143935



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                         
Query: 174    agctgcttccatttctcctggtcgctcccaggtccttcgccct 216
              |||| ||||||||||||  ||||||||||||||||||||||||
Sbjct: 143442 agctccttccatttctctgggtcgctcccaggtccttcgccct 143484
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  137 bits (69), Expect = 4e-29
 Identities = 102/113 (90%)
 Strand = Plus / Plus

                                                                            
Query: 214      ccttcaccgaactaatctcgtatatttttccttgggtagattcaatatccaaagcttgga 273
                ||||||||||  | ||||||||||||| |||||  ||  |||||||||||||||||||||
Sbjct: 13579629 ccttcaccgagttgatctcgtatatttgtccttctgtgaattcaatatccaaagcttgga 13579688

                                                                     
Query: 274      tacatgcttctgccaccaccaatctgctcgcttctcccacaagcttgtcacct 326
                |||| |||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 13579689 tacaggcttctgccaccaccagtctgcttgcttctcccacaagcttgtcacct 13579741



 Score =  123 bits (62), Expect = 6e-25
 Identities = 80/86 (93%)
 Strand = Plus / Plus

                                                                            
Query: 426      atgatggtgaaaggtatgcctgaattacggacaaagtcctctgccatcttcttgtattta 485
                ||||||||||||||||||||||| ||  |||||||||||||||||||||||||||| |||
Sbjct: 13579994 atgatggtgaaaggtatgcctgagttctggacaaagtcctctgccatcttcttgtactta 13580053

                                          
Query: 486      agcacaccaaataggttcatgatact 511
                ||||||||||| || |||||||||||
Sbjct: 13580054 agcacaccaaacagattcatgatact 13580079



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 79/89 (88%)
 Strand = Plus / Plus

                                                                            
Query: 337      caactgctcgtctttctccagctgtagccttaacaagtgtgttcaggtcataggaagtgt 396
                ||||||| |||||||||||||| ||||| | || ||||||||| |||||||| |||||||
Sbjct: 13579831 caactgcccgtctttctccagcagtagcttgaagaagtgtgttaaggtcataagaagtgt 13579890

                                             
Query: 397      agggcccatctgttaatctccccggcctg 425
                |||| ||||| ||||||||||| ||||||
Sbjct: 13579891 agggtccatcggttaatctcccaggcctg 13579919



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                           
Query: 174      agctgcttccatttctcctggtcgctcccaggtccttcgccct 216
                |||| ||||||||||||  ||||||||||||||||||||||||
Sbjct: 13579426 agctccttccatttctctgggtcgctcccaggtccttcgccct 13579468
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>ref|NM_119302.3| Arabidopsis thaliana unknown protein AT4G31530 mRNA, complete cds
          Length = 1169

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 469 ccatcttcttgtatttaagcacaccaaataggttcatgat 508
           ||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 697 ccatcttcttgtacttaagaactccaaaaaggttcatgat 658
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>emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BAC clone F3L17 (ESSA project)
          Length = 94319

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 469   ccatcttcttgtatttaagcacaccaaataggttcatgat 508
             ||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 61274 ccatcttcttgtacttaagaactccaaaaaggttcatgat 61235
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>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75
          Length = 196242

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 469   ccatcttcttgtatttaagcacaccaaataggttcatgat 508
             ||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 49339 ccatcttcttgtacttaagaactccaaaaaggttcatgat 49300
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>gb|BT008347.1| Arabidopsis thaliana At4g31530 mRNA, complete cds
          Length = 975

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 469 ccatcttcttgtatttaagcacaccaaataggttcatgat 508
           ||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 655 ccatcttcttgtacttaagaactccaaaaaggttcatgat 616
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>emb|BX828210.1|CNS0A2WT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH63ZH05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1051

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 469 ccatcttcttgtatttaagcacaccaaataggttcatgat 508
           ||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 635 ccatcttcttgtacttaagaactccaaaaaggttcatgat 596
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>emb|BX827010.1|CNS0A35O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB86ZC12 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 747

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 469 ccatcttcttgtatttaagcacaccaaataggttcatgat 508
           ||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 275 ccatcttcttgtacttaagaactccaaaaaggttcatgat 236
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>emb|BX827371.1|CNS0A2DI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS45ZF05 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1068

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 469 ccatcttcttgtatttaagcacaccaaataggttcatgat 508
           ||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 660 ccatcttcttgtacttaagaactccaaaaaggttcatgat 621
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>dbj|AK117306.1| Arabidopsis thaliana At4g31530 mRNA for unknown protein, complete
           cds, clone: RAFL16-87-A03
          Length = 1162

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 469 ccatcttcttgtatttaagcacaccaaataggttcatgat 508
           ||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 697 ccatcttcttgtacttaagaactccaaaaaggttcatgat 658
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 372     agtgtgttcaggtcataggaagtgtagggcccatc 406
               ||||| ||||||||||||||||| ||||| |||||
Sbjct: 3544302 agtgtattcaggtcataggaagtataggggccatc 3544268
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>dbj|AP003127.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-710G6, complete
              sequences
          Length = 161238

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 311    cacaagcttgtcaccttggccta 333
              |||||||||||||||||||||||
Sbjct: 107175 cacaagcttgtcaccttggccta 107197
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>emb|BX537261.7| Zebrafish DNA sequence from clone DKEY-73F6 in linkage group 14,
             complete sequence
          Length = 135268

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 71    attgtgcacctattactgaat 91
             |||||||||||||||||||||
Sbjct: 98529 attgtgcacctattactgaat 98509
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>emb|BX005250.7| Zebrafish DNA sequence from clone DKEY-35H6 in linkage group 14, complete
              sequence
          Length = 281427

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 71     attgtgcacctattactgaat 91
              |||||||||||||||||||||
Sbjct: 237946 attgtgcacctattactgaat 237926
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>gb|AC120871.12| Mus musculus chromosome 16, clone RP23-121E8, complete sequence
          Length = 218995

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    aactgctcgtctttctccag 357
              ||||||||||||||||||||
Sbjct: 151751 aactgctcgtctttctccag 151770
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>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0037H06, complete sequence
          Length = 144457

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  gtcctctgccatcttcttgt 480
            ||||||||||||||||||||
Sbjct: 8196 gtcctctgccatcttcttgt 8177
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>gb|AC137624.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0680F01,
             complete sequence
          Length = 156691

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   gtcctctgccatcttcttgt 480
             ||||||||||||||||||||
Sbjct: 84177 gtcctctgccatcttcttgt 84158
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>emb|CT010512.8| Mouse DNA sequence from clone RP23-283M18 on chromosome 16, complete
              sequence
          Length = 202415

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    aactgctcgtctttctccag 357
              ||||||||||||||||||||
Sbjct: 114650 aactgctcgtctttctccag 114669
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>emb|CR407582.7| Zebrafish DNA sequence from clone DKEY-224L8 in linkage group 7, complete
              sequence
          Length = 200693

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 513    catggtatttcattgtattt 532
              ||||||||||||||||||||
Sbjct: 182860 catggtatttcattgtattt 182879
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>gb|AC101910.20| Mus musculus chromosome 7, clone RP24-327I20, complete sequence
          Length = 197719

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    cagcttgagacaaagtgcca 148
              ||||||||||||||||||||
Sbjct: 104325 cagcttgagacaaagtgcca 104344
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>emb|CR388046.14| Zebrafish DNA sequence from clone DKEY-50E6 in linkage group 7, complete
              sequence
          Length = 211210

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 513    catggtatttcattgtattt 532
              ||||||||||||||||||||
Sbjct: 109949 catggtatttcattgtattt 109968
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 461     gtcctctgccatcttcttgt 480
               ||||||||||||||||||||
Sbjct: 8675754 gtcctctgccatcttcttgt 8675735
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>gb|AC156599.2| Laccaria bicolor clone JGIAHZW-3X, complete sequence
          Length = 44441

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 110   cctcgtatggaatccactacagcttgag 137
             ||||||||||||| |||||| |||||||
Sbjct: 25472 cctcgtatggaatgcactacggcttgag 25499
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>dbj|BS000227.1| Pan troglodytes chromosome 22 clone:PTB-059D22, map 22, complete
             sequences
          Length = 148847

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   cttctgccaccaccaatctg 299
             ||||||||||||||||||||
Sbjct: 12951 cttctgccaccaccaatctg 12932
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>emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-736L22 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171699

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    aaatagctgcttccatttct 189
              ||||||||||||||||||||
Sbjct: 116112 aaatagctgcttccatttct 116093
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>emb|AL669926.6| Mouse DNA sequence from clone RP23-74K21 on chromosome 2, complete
            sequence
          Length = 226854

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  agttcgattcagcagctgca 170
            ||||||||||||||||||||
Sbjct: 7051 agttcgattcagcagctgca 7032


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,181,671
Number of Sequences: 3902068
Number of extensions: 4181671
Number of successful extensions: 79194
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79022
Number of HSP's gapped (non-prelim): 172
length of query: 532
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 509
effective length of database: 17,143,297,704
effective search space: 8725938531336
effective search space used: 8725938531336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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