Clone Name | rbah61d01 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ298132.1|HVU298132 Hordeum vulgare mRNA for polyamine oxidase (bpao2 gene) Length = 1700 Score = 743 bits (375), Expect = 0.0 Identities = 387/391 (98%) Strand = Plus / Minus Query: 146 aaaagcttccacgttaactgtgacacgcgtctgagtttattccatgacgatgcatgcgag 205 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1700 aaaagcttccacgttaactgtggcacgcgtctgagtttattccatgacgatgcatgcgag 1641 Query: 206 cagactggcatggcatctcaacttcctccttcatttagcctcagctttcagctcgtcgtc 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1640 cagactggcatggcatctcaacttcctccttcatttagcctcagctttcagctcgtcgtc 1581 Query: 266 atacttgggacggactttaaagtcgacgttgttgagggccttgttcatcagaatgtccgc 325 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1580 atacttgggacggactttaaagtcgacgttgttggaggccttgttcatcagaatgtccgc 1521 Query: 326 ggagtgtatacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtg 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1520 ggagtgtatacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtg 1461 Query: 386 ctccccggtgaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcg 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1460 ctccccggtgaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcg 1401 Query: 446 gttgacgccgatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcg 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1400 gttgacgccgatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcg 1341 Query: 506 cggcacgtagatatcggtggcgtcggggacg 536 | ||||||||||||||||||||||||||||| Sbjct: 1340 cagcacgtagatatcggtggcgtcggggacg 1310
>emb|AJ234402.1|HVU234402 Hordeum vulgare partial mRNA; clone cMWG0647 Length = 252 Score = 379 bits (191), Expect = e-102 Identities = 227/235 (96%), Gaps = 5/235 (2%) Strand = Plus / Minus Query: 2 agtgtttttattcgatnaa-ttacaagaaattacatcactggaacgcttcaacaggaacc 60 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct: 237 agtgtttttattcgatcaaattacaagaaattacatcactggaacgcttcaacaggaacc 178 Query: 61 acatactctcggagaatccaaacacgggaggcacgaaagaaagctggaacgtcacattat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 177 acatactctcggagaatccaaacacgggaggcacgaaagaaagctggaacgtcacattat 118 Query: 121 ttcgcctcacatcaaattcttggggaaaagcttccacgttaa-ctg--tgacacgcgtct 177 |||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||| Sbjct: 117 ttcgcctcacatcaaattcttggggaaaagcttccacgttaacctgcttggcacgcvtct 58 Query: 178 gagtttatt-ccatgacgatgcatgcgagcagactggcatggcatctcaacttcc 231 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57 gagtttattcccatgacgatgcatgcgagcagactggcatggcatctcaacttcc 3
>emb|AJ304793.1|HVU304793 Hordeum vulgare bpao2 gene for flavin containing polyamine oxidase, exons 1-8 Length = 4217 Score = 339 bits (171), Expect = 6e-90 Identities = 177/179 (98%) Strand = Plus / Minus Query: 244 cctcagctttcagctcgtcgtcatacttgggacggactttaaagtcgacgttgttgaggg 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 3994 cctcagctttcagctcgtcgtcatacttgggacggactttaaagtcgacgttgttggagg 3935 Query: 304 ccttgttcatcagaatgtccgcggagtgtatacctgcaagataagctccgtggacatagc 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3934 ccttgttcatcagaatgtccgcggagtgtatacctgcaagataagctccgtggacatagc 3875 Query: 364 cattgtagtgctcgctggtgtgctccccggtgaagtagacccgcccgccaaccggcgcc 422 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3874 cattgtagtgctcgctggtgtgctccccggtgaagtagacccgcccgccaaccggcgcc 3816 Score = 222 bits (112), Expect = 9e-55 Identities = 115/116 (99%) Strand = Plus / Minus Query: 421 cccggagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagccct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3690 cccggagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagccct 3631 Query: 481 tgaagaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggacg 536 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 3630 tgaagaatcggttggaccaccagcgcagcacgtagatatcggtggcgtcggggacg 3575 Score = 192 bits (97), Expect = 8e-46 Identities = 100/101 (99%) Strand = Plus / Minus Query: 146 aaaagcttccacgttaactgtgacacgcgtctgagtttattccatgacgatgcatgcgag 205 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 4217 aaaagcttccacgttaactgtggcacgcgtctgagtttattccatgacgatgcatgcgag 4158 Query: 206 cagactggcatggcatctcaacttcctccttcatttagcct 246 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 4157 cagactggcatggcatctcaacttcctccttcatttagcct 4117
>emb|AJ298131.1|HVU298131 Hordeum vulgare mRNA for polyamine oxidase (bpao1 gene) Length = 1583 Score = 204 bits (103), Expect = 2e-49 Identities = 195/225 (86%), Gaps = 3/225 (1%) Strand = Plus / Minus Query: 312 atcagaatgtccgcggagtgtatacctgcaagataagctccgtggacatagccattgtag 371 ||||||||||| || |||| ||||||| |||||||||||| |||||||| || |||||| Sbjct: 1478 atcagaatgtctgcagagtcaatacctgaaagataagctccatggacataaccgttgtag 1419 Query: 372 tgctcgctggtgtgctccccggtgaagtagacccgcccgccaaccggcgcccggagctgg 431 ||||||||||||||||||||||||||||| |||| |||| ||||| |||| ||||||| Sbjct: 1418 tgctcgctggtgtgctccccggtgaagtaaaccctcccg---accggtgccctgagctgg 1362 Query: 432 tcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaagaatcgg 491 ||||| ||||||||||||||||||||||||||||||||| ||| |||| || |||| | | Sbjct: 1361 tcgtattcgtagcggttgacgccgatgggccagttggagaaggtgcccctgtagaacctg 1302 Query: 492 ttggaccaccagcgcggcacgtagatatcggtggcgtcggggacg 536 | ||||||||| || |||||| ||| || || |||||||||||| Sbjct: 1301 tcggaccaccaccgtggcacgaggatgtccgtcgcgtcggggacg 1257
>ref|XM_450667.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1473 Score = 178 bits (90), Expect = 1e-41 Identities = 191/224 (85%), Gaps = 3/224 (1%) Strand = Plus / Minus Query: 312 atcagaatgtccgcggagtgtatacctgcaagataagctccgtggacatagccattgtag 371 |||||||| || || |||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 1418 atcagaatctctgcagagtcaatacctgcaagataagctccatggacatagccattgtag 1359 Query: 372 tgctcgctggtgtgctccccggtgaagtagacccgcccgccaaccggcgcccggagctgg 431 ||||||| |||||||| ||||||||||| || | | ||||||||||||| ||||||| Sbjct: 1358 cgctcgctcgtgtgctcaccggtgaagtacactctc---ccaaccggcgccctgagctgg 1302 Query: 432 tcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaagaatcgg 491 || ||||||||||| ||||||||||||||||||||||| || |||| |||||| | | Sbjct: 1301 tcatactcgtagcgactgacgccgatgggccagttggagaagctgccccggaagaacctg 1242 Query: 492 ttggaccaccagcgcggcacgtagatatcggtggcgtcggggac 535 | ||||||||| | ||| ||| ||| ||||||||||||||||| Sbjct: 1241 tcggaccaccatctcgggacgaggatgtcggtggcgtcggggac 1198
>emb|AJ002204.1|ZMJ002204 Zea mays mRNA for flavin containing polyamine oxidase (PAO) Length = 1750 Score = 167 bits (84), Expect = 5e-38 Identities = 188/222 (84%), Gaps = 3/222 (1%) Strand = Plus / Minus Query: 315 agaatgtccgcggagtgtatacctgcaagataagctccgtggacatagccattgtagtgc 374 ||||| || ||||||| ||||||| |||||| ||||| ||||||||||||||||||||| Sbjct: 1514 agaatttcagcggagtcgatacctgaaagataggctccatggacatagccattgtagtgc 1455 Query: 375 tcgctggtgtgctccccggtgaagtagacccgcccgccaaccggcgcccggagctggtcg 434 |||||||||||||| ||||||||||| |||| | |||||||| |||| ||||||||| Sbjct: 1454 tcgctggtgtgctcgccggtgaagtataccctc---ccaaccggtgccctaagctggtcg 1398 Query: 435 tactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaagaatcggttg 494 || ||||||||||||||||| | |||||||||||| ||| ||||||| |||| | || | Sbjct: 1397 tattcgtagcggttgacgccaactggccagttggagaaggtgcccttgtagaacctgtcg 1338 Query: 495 gaccaccagcgcggcacgtagatatcggtggcgtcggggacg 536 |||||||| | ||| || ||| ||||||||||| |||||| Sbjct: 1337 gaccaccacctcgggacaaggatgtcggtggcgtccgggacg 1296
>gb|AY107888.1| Zea mays PCO061908 mRNA sequence Length = 1895 Score = 167 bits (84), Expect = 5e-38 Identities = 188/222 (84%), Gaps = 3/222 (1%) Strand = Plus / Minus Query: 315 agaatgtccgcggagtgtatacctgcaagataagctccgtggacatagccattgtagtgc 374 ||||| || ||||||| ||||||| |||||| ||||| ||||||||||||||||||||| Sbjct: 1520 agaatttcagcggagtcgatacctgaaagataggctccatggacatagccattgtagtgc 1461 Query: 375 tcgctggtgtgctccccggtgaagtagacccgcccgccaaccggcgcccggagctggtcg 434 |||||||||||||| ||||||||||| |||| | |||||||| |||| ||||||||| Sbjct: 1460 tcgctggtgtgctcgccggtgaagtataccctc---ccaaccggtgccctaagctggtcg 1404 Query: 435 tactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaagaatcggttg 494 || ||||||||||||||||| | |||||||||||| ||| ||||||| |||| | || | Sbjct: 1403 tattcgtagcggttgacgccaactggccagttggagaaggtgcccttgtagaacctgtcg 1344 Query: 495 gaccaccagcgcggcacgtagatatcggtggcgtcggggacg 536 |||||||| | ||| || ||| ||||||||||| |||||| Sbjct: 1343 gaccaccacctcgggacaaggatgtcggtggcgtccgggacg 1302
>ref|XM_470573.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 161 bits (81), Expect = 3e-36 Identities = 164/191 (85%), Gaps = 3/191 (1%) Strand = Plus / Minus Query: 312 atcagaatgtccgcggagtgtatacctgcaagataagctccgtggacatagccattgtag 371 |||||||| ||||| |||| ||||||||||||||| |||| |||||||||||||||||| Sbjct: 989 atcagaatttccgcagagtcaatacctgcaagataacctccatggacatagccattgtag 930 Query: 372 tgctcgctggtgtgctccccggtgaagtagacccgcccgccaaccggcgcccggagctgg 431 | |||||| |||||||| ||||||||||| |||| | ||| ||| |||| ||||||| Sbjct: 929 tactcgcttgtgtgctcaccggtgaagtaaaccctc---tcaatcggggccctgagctgg 873 Query: 432 tcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaagaatcgg 491 || || ||||||||||||||||| ||||||||||||||| ||| ||||||| |||| | | Sbjct: 872 tcatattcgtagcggttgacgccaatgggccagttggagaaggtgcccttgtagaacctg 813 Query: 492 ttggaccacca 502 || |||||||| Sbjct: 812 tttgaccacca 802
>emb|AJ251568.1|ZMA251568 Zea mays PAO gene for flavin containing polyamine oxidase, exons 1-8 Length = 4096 Score = 159 bits (80), Expect = 1e-35 Identities = 172/202 (85%), Gaps = 3/202 (1%) Strand = Plus / Minus Query: 335 acctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccggt 394 ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 3900 acctgaaagataggctccatggacatagccattgtagtgctcgctggtgtgctcgccggt 3841 Query: 395 gaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcggttgacgcc 454 |||||| |||| | |||||||| |||| ||||||||||| ||||||||||||||||| Sbjct: 3840 gaagtataccctc---ccaaccggtgccctaagctggtcgtattcgtagcggttgacgcc 3784 Query: 455 gatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcgcggcacgta 514 | |||||||||||| ||| ||||||| |||| | || ||||||||| | ||| || Sbjct: 3783 aactggccagttggagaaggtgcccttgtagaacctgtcggaccaccacctcgggacaag 3724 Query: 515 gatatcggtggcgtcggggacg 536 ||| ||||||||||| |||||| Sbjct: 3723 gatgtcggtggcgtccgggacg 3702
>emb|AJ251018.1|ZMA251018 Zea mays pao gene for polyamine oxidase, exons 1-8, clone pMPAO2 Length = 4344 Score = 159 bits (80), Expect = 1e-35 Identities = 172/202 (85%), Gaps = 3/202 (1%) Strand = Plus / Minus Query: 335 acctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccggt 394 ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 4147 acctgaaagataggctccatggacatagccattgtagtgctcgctggtgtgctcaccggt 4088 Query: 395 gaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcggttgacgcc 454 |||||| |||| | |||||||| |||| ||||||||||| ||||||||||||||||| Sbjct: 4087 gaagtataccctc---ccaaccggtgccctaagctggtcgtattcgtagcggttgacgcc 4031 Query: 455 gatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcgcggcacgta 514 | |||||||||||| ||| ||||||| |||| | || ||||||||| | ||| || Sbjct: 4030 aactggccagttggagaaggtgcccttgtagaacctgtcggaccaccatctcgggacaag 3971 Query: 515 gatatcggtggcgtcggggacg 536 ||| ||||||||||| |||||| Sbjct: 3970 gatgtcggtggcgtccgggacg 3949
>ref|XM_450669.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1588 Score = 155 bits (78), Expect = 2e-34 Identities = 173/204 (84%), Gaps = 3/204 (1%) Strand = Plus / Minus Query: 333 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 392 |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct: 1430 atacctgcaagataagctccatggacatagccattgtagcgctcgctcgtgtgctcaccg 1371 Query: 393 gtgaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcggttgacg 452 ||||| ||||| | | ||||||||||||| ||||||||| | |||||||| ||||| Sbjct: 1370 gtgaaatagactctc---ccaaccggcgccctgagctggtcatgttcgtagcgactgacg 1314 Query: 453 ccgatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcgcggcacg 512 |||||||||||||||||| || ||| | |||||| | || |||||||| | ||| ||| Sbjct: 1313 ccgatgggccagttggagaagctgccttggaagaacctgtccgaccaccatctcgggacg 1254 Query: 513 tagatatcggtggcgtcggggacg 536 ||| |||||||||||||||||| Sbjct: 1253 aggatgtcggtggcgtcggggacg 1230
>dbj|AK069392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014L10, full insert sequence Length = 1587 Score = 155 bits (78), Expect = 2e-34 Identities = 173/204 (84%), Gaps = 3/204 (1%) Strand = Plus / Minus Query: 333 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 392 |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct: 1429 atacctgcaagataagctccatggacatagccattgtagcgctcgctcgtgtgctcaccg 1370 Query: 393 gtgaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcggttgacg 452 ||||| ||||| | | ||||||||||||| ||||||||| | |||||||| ||||| Sbjct: 1369 gtgaaatagactctc---ccaaccggcgccctgagctggtcatgttcgtagcgactgacg 1313 Query: 453 ccgatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcgcggcacg 512 |||||||||||||||||| || ||| | |||||| | || |||||||| | ||| ||| Sbjct: 1312 ccgatgggccagttggagaagctgccttggaagaacctgtccgaccaccatctcgggacg 1253 Query: 513 tagatatcggtggcgtcggggacg 536 ||| |||||||||||||||||| Sbjct: 1252 aggatgtcggtggcgtcggggacg 1229
>emb|AJ251019.1|ZMA251019 Zea mays pao gene for polyamine oxidase, exons 1-8, clone pMPAO3 Length = 3384 Score = 151 bits (76), Expect = 3e-33 Identities = 171/202 (84%), Gaps = 3/202 (1%) Strand = Plus / Minus Query: 335 acctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccggt 394 ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 3188 acctgaaagataggctccatggacatagccattgtagtgctcgctggtgtgctcaccggt 3129 Query: 395 gaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcggttgacgcc 454 |||||| |||| | |||||||| |||| ||||||||||| ||||||||||||||||| Sbjct: 3128 gaagtataccctc---ccaaccggtgccctaagctggtcgtattcgtagcggttgacgcc 3072 Query: 455 gatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcgcggcacgta 514 | |||||||| ||| ||| ||||||| |||| | || ||||||||| | ||| || Sbjct: 3071 aactggccagttagagaaggtgcccttgtagaacctgtcggaccaccacctcgggacaag 3012 Query: 515 gatatcggtggcgtcggggacg 536 ||| ||||||||||| |||||| Sbjct: 3011 gatgtcggtggcgtctgggacg 2990
>emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for flavin containing polyamine oxidase, exons 1-9 Length = 2942 Score = 107 bits (54), Expect = 4e-20 Identities = 72/78 (92%) Strand = Plus / Minus Query: 333 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 392 ||||||| |||||||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct: 2711 atacctgaaagataagctccatggacataaccgttgtagtgctcgctggtgtgctccccg 2652 Query: 393 gtgaagtagacccgcccg 410 |||||||| |||| |||| Sbjct: 2651 gtgaagtaaaccctcccg 2634 Score = 95.6 bits (48), Expect = 1e-16 Identities = 96/112 (85%) Strand = Plus / Minus Query: 425 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 484 |||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| || | Sbjct: 2490 gagctggtcgtattcgtagcggttgacgccgatgggccagttggagaaggtgcccctgta 2431 Query: 485 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggacg 536 ||| | || ||||||||| || ||||| ||| || || |||||||||||| Sbjct: 2430 gaacctgtcggaccaccaccgtggcactaggatgtccgtcgcgtcggggacg 2379
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 103 bits (52), Expect = 6e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 330 tgtatacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctcc 389 |||||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||| Sbjct: 4848268 tgtatacctgcaagataacctccatggacatagccattgtagtactcgcttgtgtgctca 4848209 Query: 390 ccggtgaagtagaccc 405 ||||||||||| |||| Sbjct: 4848208 ccggtgaagtaaaccc 4848193 Score = 83.8 bits (42), Expect = 5e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 425 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 484 ||||||||| || ||||||||||||||||| ||||||||||||||| ||| ||||||| | Sbjct: 4848050 gagctggtcatattcgtagcggttgacgccaatgggccagttggagaaggtgcccttgta 4847991 Query: 485 gaatcggttggaccacca 502 ||| | ||| |||||||| Sbjct: 4847990 gaacctgtttgaccacca 4847973
>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16, complete sequence Length = 159092 Score = 103 bits (52), Expect = 6e-19 Identities = 70/76 (92%) Strand = Plus / Plus Query: 330 tgtatacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctcc 389 |||||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||| Sbjct: 147279 tgtatacctgcaagataacctccatggacatagccattgtagtactcgcttgtgtgctca 147338 Query: 390 ccggtgaagtagaccc 405 ||||||||||| |||| Sbjct: 147339 ccggtgaagtaaaccc 147354 Score = 83.8 bits (42), Expect = 5e-13 Identities = 69/78 (88%) Strand = Plus / Plus Query: 425 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 484 ||||||||| || ||||||||||||||||| ||||||||||||||| ||| ||||||| | Sbjct: 147497 gagctggtcatattcgtagcggttgacgccaatgggccagttggagaaggtgcccttgta 147556 Query: 485 gaatcggttggaccacca 502 ||| | ||| |||||||| Sbjct: 147557 gaacctgtttgaccacca 147574
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 103 bits (52), Expect = 6e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 333 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 392 |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct: 12092784 atacctgcaagataagctccatggacatagccattgtagcgctcgctcgtgtgctcaccg 12092843 Query: 393 gtgaagta 400 |||||||| Sbjct: 12092844 gtgaagta 12092851 Score = 101 bits (51), Expect = 2e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 333 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 392 |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct: 12113134 atacctgcaagataagctccatggacatagccattgtagcgctcgctcgtgtgctcaccg 12113193 Query: 393 gtgaagtagac 403 ||||| ||||| Sbjct: 12113194 gtgaaatagac 12113204 Score = 85.7 bits (43), Expect = 1e-13 Identities = 94/111 (84%) Strand = Plus / Plus Query: 425 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 484 ||||||||| ||||||||||| ||||||||||||||||||||||| || |||| ||| Sbjct: 12092982 gagctggtcatactcgtagcgactgacgccgatgggccagttggagaagctgccccggaa 12093041 Query: 485 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggac 535 ||| | || ||||||||| | ||| ||| ||| ||||||||||||||||| Sbjct: 12093042 gaacctgtcggaccaccatctcgggacgaggatgtcggtggcgtcggggac 12093092 Score = 63.9 bits (32), Expect = 5e-07 Identities = 92/112 (82%) Strand = Plus / Plus Query: 425 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 484 ||||||||| | |||||||| ||||||||||||||||||||||| || ||| | ||| Sbjct: 12113376 gagctggtcatgttcgtagcgactgacgccgatgggccagttggagaagctgccttggaa 12113435 Query: 485 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggacg 536 ||| | || |||||||| | ||| ||| ||| |||||||||||||||||| Sbjct: 12113436 gaacctgtccgaccaccatctcgggacgaggatgtcggtggcgtcggggacg 12113487
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 103 bits (52), Expect = 6e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 330 tgtatacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctcc 389 |||||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||| Sbjct: 4847483 tgtatacctgcaagataacctccatggacatagccattgtagtactcgcttgtgtgctca 4847424 Query: 390 ccggtgaagtagaccc 405 ||||||||||| |||| Sbjct: 4847423 ccggtgaagtaaaccc 4847408 Score = 83.8 bits (42), Expect = 5e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 425 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 484 ||||||||| || ||||||||||||||||| ||||||||||||||| ||| ||||||| | Sbjct: 4847265 gagctggtcatattcgtagcggttgacgccaatgggccagttggagaaggtgcccttgta 4847206 Query: 485 gaatcggttggaccacca 502 ||| | ||| |||||||| Sbjct: 4847205 gaacctgtttgaccacca 4847188
>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1759_F09 Length = 149501 Score = 103 bits (52), Expect = 6e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 333 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 392 |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct: 4243 atacctgcaagataagctccatggacatagccattgtagcgctcgctcgtgtgctcaccg 4302 Query: 393 gtgaagta 400 |||||||| Sbjct: 4303 gtgaagta 4310 Score = 101 bits (51), Expect = 2e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 333 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 392 |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct: 24593 atacctgcaagataagctccatggacatagccattgtagcgctcgctcgtgtgctcaccg 24652 Query: 393 gtgaagtagac 403 ||||| ||||| Sbjct: 24653 gtgaaatagac 24663 Score = 85.7 bits (43), Expect = 1e-13 Identities = 94/111 (84%) Strand = Plus / Plus Query: 425 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 484 ||||||||| ||||||||||| ||||||||||||||||||||||| || |||| ||| Sbjct: 4441 gagctggtcatactcgtagcgactgacgccgatgggccagttggagaagctgccccggaa 4500 Query: 485 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggac 535 ||| | || ||||||||| | ||| ||| ||| ||||||||||||||||| Sbjct: 4501 gaacctgtcggaccaccatctcgggacgaggatgtcggtggcgtcggggac 4551 Score = 63.9 bits (32), Expect = 5e-07 Identities = 92/112 (82%) Strand = Plus / Plus Query: 425 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 484 ||||||||| | |||||||| ||||||||||||||||||||||| || ||| | ||| Sbjct: 24835 gagctggtcatgttcgtagcgactgacgccgatgggccagttggagaagctgccttggaa 24894 Query: 485 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggacg 536 ||| | || |||||||| | ||| ||| ||| |||||||||||||||||| Sbjct: 24895 gaacctgtccgaccaccatctcgggacgaggatgtcggtggcgtcggggacg 24946
>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0564H06 Length = 146823 Score = 103 bits (52), Expect = 6e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 333 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 392 |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct: 27163 atacctgcaagataagctccatggacatagccattgtagcgctcgctcgtgtgctcaccg 27222 Query: 393 gtgaagta 400 |||||||| Sbjct: 27223 gtgaagta 27230 Score = 101 bits (51), Expect = 2e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 333 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 392 |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct: 47513 atacctgcaagataagctccatggacatagccattgtagcgctcgctcgtgtgctcaccg 47572 Query: 393 gtgaagtagac 403 ||||| ||||| Sbjct: 47573 gtgaaatagac 47583 Score = 85.7 bits (43), Expect = 1e-13 Identities = 94/111 (84%) Strand = Plus / Plus Query: 425 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 484 ||||||||| ||||||||||| ||||||||||||||||||||||| || |||| ||| Sbjct: 27361 gagctggtcatactcgtagcgactgacgccgatgggccagttggagaagctgccccggaa 27420 Query: 485 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggac 535 ||| | || ||||||||| | ||| ||| ||| ||||||||||||||||| Sbjct: 27421 gaacctgtcggaccaccatctcgggacgaggatgtcggtggcgtcggggac 27471 Score = 63.9 bits (32), Expect = 5e-07 Identities = 92/112 (82%) Strand = Plus / Plus Query: 425 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 484 ||||||||| | |||||||| ||||||||||||||||||||||| || ||| | ||| Sbjct: 47755 gagctggtcatgttcgtagcgactgacgccgatgggccagttggagaagctgccttggaa 47814 Query: 485 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggacg 536 ||| | || |||||||| | ||| ||| ||| |||||||||||||||||| Sbjct: 47815 gaacctgtccgaccaccatctcgggacgaggatgtcggtggcgtcggggacg 47866
>gb|AC096691.6| Oryza sativa chromosome 10 BAC OSJNBa0083M08 genomic sequence, complete sequence Length = 106110 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 354 tggacatagccattgtagtgctcgctggtgtgctccccggtgaa 397 |||||||||||||||||||| ||||| |||||||| || ||||| Sbjct: 41460 tggacatagccattgtagtgttcgcttgtgtgctcgcctgtgaa 41503
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 354 tggacatagccattgtagtgctcgctggtgtgctccccggtgaa 397 |||||||||||||||||||| ||||| |||||||| || ||||| Sbjct: 11026776 tggacatagccattgtagtgttcgcttgtgtgctcgcctgtgaa 11026733
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 354 tggacatagccattgtagtgctcgctggtgtgctccccggtgaa 397 |||||||||||||||||||| ||||| |||||||| || ||||| Sbjct: 11033216 tggacatagccattgtagtgttcgcttgtgtgctcgcctgtgaa 11033173
>gb|AC110085.3| Homo sapiens BAC clone RP11-603P13 from 4, complete sequence Length = 80015 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 acatcaaattcttggggaaaa 149 ||||||||||||||||||||| Sbjct: 19517 acatcaaattcttggggaaaa 19497
>emb|AL928639.5| Mouse DNA sequence from clone RP23-446O17 on chromosome 2, complete sequence Length = 177843 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 459 ggccagttggagtaggagccc 479 ||||||||||||||||||||| Sbjct: 67336 ggccagttggagtaggagccc 67356
>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06, complete sequence Length = 139139 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 gacccgcccgccaaccggcg 420 |||||||||||||||||||| Sbjct: 41732 gacccgcccgccaaccggcg 41751
>ref|XM_627096.1| Cryptosporidium parvum Iowa II mannose-6-phosphate isomerase (cgd8_1920), partial mRNA Length = 1731 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 aattacaagaaattacatca 38 |||||||||||||||||||| Sbjct: 445 aattacaagaaattacatca 426
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 gacccgcccgccaaccggcg 420 |||||||||||||||||||| Sbjct: 27677174 gacccgcccgccaaccggcg 27677193 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,468,153 Number of Sequences: 3902068 Number of extensions: 3468153 Number of successful extensions: 55862 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55665 Number of HSP's gapped (non-prelim): 175 length of query: 536 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 513 effective length of database: 17,143,297,704 effective search space: 8794511722152 effective search space used: 8794511722152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)