ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61c24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UVRC_WOLSU (Q7M8K0) UvrABC system protein C (Protein uvrC) (Exci... 29 8.8
2PAC_BACME (Q60136) Penicillin G acylase precursor (EC 3.5.1.11) ... 29 8.8

>UVRC_WOLSU (Q7M8K0) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 602

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 443 LTSLKYSMMQIDCTHTKGGLCVDSVVIYPKGYRRE 339
           L SL   +   D +H +G  CV ++V+Y +G+ +E
Sbjct: 388 LESLPRRIEAFDTSHLRGEACVGAMVVYEEGFCKE 422



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>PAC_BACME (Q60136) Penicillin G acylase precursor (EC 3.5.1.11) (Penicillin G|
           amidase) (Penicillin G amidohydrolase) [Contains:
           Penicillin G acylase zymogen; Penicillin G acylase alpha
           subunit; Penicillin G acylase beta subunit]
          Length = 802

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 578 WDARPTRFQLSTSDEQQATSEYYLDGPGSWILYHVGDFVISNS 450
           W      F+ + S+   + + YY D  G    YHVG + + NS
Sbjct: 428 WAKNLKEFENAASEYTMSLNWYYADKKGDIAYYHVGRYPVRNS 470


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,883,586
Number of Sequences: 219361
Number of extensions: 1558175
Number of successful extensions: 3914
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3911
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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