ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61c24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
2dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
3dbj|AK100726.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 1e-26
4gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome... 74 6e-10
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 74 6e-10
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
7dbj|AK106276.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 6e-10
8ref|XM_473560.1| Oryza sativa (japonica cultivar-group), predic... 58 3e-05
9emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4,... 58 3e-05
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
11dbj|AK099216.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
12dbj|AK064611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
13gb|AY106517.1| Zea mays PCO071075 mRNA sequence 52 0.002
14gb|AF488721.1| Human calicivirus NLV/Eger/HUNs19/2000/HUN RNA-de... 44 0.51
15gb|AF325777.1|AF325777 Human calicivirus NLV/Oberschleissheim 10... 44 0.51
16gb|AF312512.1|AF312512 Human calicivirus NLV/Laucha 403/1999/DE ... 44 0.51
17gb|AC163351.2| Mus musculus BAC clone RP23-150D4 from chromosome... 42 2.0
18ref|XM_949165.1| Theileria annulata strain Ankara hypothetical p... 42 2.0
19emb|X69944.1|NVRARD1AB N.viridescens retinoic acid receptor delt... 42 2.0
20emb|X17586.1|NVRARDG Newt mRNA for retinoic receptor delta (RAR-... 42 2.0
21gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park C... 42 2.0
22gb|BT024143.1| Zea mays clone EL01N0442F12 mRNA sequence 42 2.0
23gb|AY111039.1| Zea mays CL21532_1 mRNA sequence 42 2.0
24emb|AL713863.7| Mouse DNA sequence from clone RP23-330I16 on chr... 42 2.0
25gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 8.0
26gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 8.0
27gb|AC002303.1|HUAC002303 Homo sapiens Chromosome 16 BAC clone CI... 40 8.0
28emb|CR762407.8| Zebrafish DNA sequence from clone DKEY-262N17 in... 40 8.0
29gb|AC114553.6| Mus musculus chromosome 5, clone RP23-408M16, com... 40 8.0
30gb|AC151902.3| Mus musculus BAC clone RP23-240L13 from chromosom... 40 8.0
31emb|CR391949.7| Zebrafish DNA sequence from clone CH211-149B20 i... 40 8.0
32emb|CR846093.9| Zebrafish DNA sequence from clone DKEY-88P16 in ... 40 8.0
33emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 8.0
34emb|AL845326.5| Zebrafish DNA sequence from clone CH211-191D15 i... 40 8.0
35emb|AL831791.5| Zebrafish DNA sequence from clone DKEY-76P14 in ... 40 8.0
36emb|CR812486.5| Zebrafish DNA sequence from clone DKEYP-50C7 in ... 40 8.0
37emb|BX511122.4| Zebrafish DNA sequence from clone CH211-129H1 in... 40 8.0
38emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 i... 40 8.0
39emb|BX470212.6| Zebrafish DNA sequence from clone CH211-229H7 in... 40 8.0
40gb|AC025275.4|AC025275 Homo sapiens chromosome 16 clone CTC-502C... 40 8.0
41emb|BX664629.10| Zebrafish DNA sequence from clone DKEY-30G10 in... 40 8.0
42emb|BX255962.9| Zebrafish DNA sequence from clone CH211-269C21 i... 40 8.0
43emb|BX571825.6| Zebrafish DNA sequence from clone DKEY-158E13 in... 40 8.0
44emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-7... 40 8.0
45emb|AL445383.5|CNS07ECZ Human chromosome 14 DNA sequence BAC R-8... 40 8.0
46emb|BX537133.3| Zebrafish DNA sequence from clone DKEY-90M5 in l... 40 8.0
47emb|BX470234.8| Zebrafish DNA sequence from clone DKEY-94N12 in ... 40 8.0
48emb|CR293517.8| Zebrafish DNA sequence from clone CH211-203D21 i... 40 8.0
49emb|CR925820.5| Zebrafish DNA sequence from clone CH211-22E9 in ... 40 8.0
50emb|BX005218.6| Zebrafish DNA sequence from clone CH211-127L12 i... 40 8.0
51emb|BX000489.8| Zebrafish DNA sequence from clone CH211-215E19, ... 40 8.0
52emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, ... 40 8.0
53emb|AL928954.9| Zebrafish DNA sequence from clone CH211-127D4 in... 40 8.0
54gb|U47048.1|ECU47048 Escherichia coli microcin 24 region, DNA bi... 40 8.0
55emb|AL672190.14| Mouse DNA sequence from clone RP23-150G4 on chr... 40 8.0 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  129 bits (65), Expect = 1e-26
 Identities = 197/241 (81%)
 Strand = Plus / Minus

                                                                            
Query: 344      gccgataccctttcggatatatcacaactgaatcaacgcagagaccacctttcgtgtggg 403
                ||||||||||||| |||||||||| ||||||||||||||| |  ||||||||||| ||||
Sbjct: 27569695 gccgatacccttttggatatatcaaaactgaatcaacgcacaagccacctttcgtatggg 27569636

                                                                            
Query: 404      tgcagtcaatctgcatcattgaatacttcaggctggtcagctcatccgagttcgagatga 463
                |||| |||||||||| ||||||  |||| ||  |  | ||||| |||||||||   |  |
Sbjct: 27569635 tgcaatcaatctgcaacattgagaacttgagcttcataagctcgtccgagttcagtacaa 27569576

                                                                            
Query: 464      caaaatcaccaacatgatagagaatccagcttcccggtccatctagataatactccgacg 523
                ||||||||||||||||||| || |||||||||||   |   ||||||||||| || || |
Sbjct: 27569575 caaaatcaccaacatgataaagtatccagcttccttcttgttctagataatattctgatg 27569516

                                                                            
Query: 524      tcgcctgctgttcgtccgatgttgatagctggaaccgggtgggtctggcatcccacccat 583
                | || || ||||| || || ||||| ||||| ||||| |||||| |||| ||||||||||
Sbjct: 27569515 tagcatgttgttcatctgaagttgagagctgaaaccgtgtgggtttggcttcccacccat 27569456

                 
Query: 584      g 584
                |
Sbjct: 27569455 g 27569455
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>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0135D07
          Length = 170587

 Score =  129 bits (65), Expect = 1e-26
 Identities = 197/241 (81%)
 Strand = Plus / Minus

                                                                         
Query: 344   gccgataccctttcggatatatcacaactgaatcaacgcagagaccacctttcgtgtggg 403
             ||||||||||||| |||||||||| ||||||||||||||| |  ||||||||||| ||||
Sbjct: 49364 gccgatacccttttggatatatcaaaactgaatcaacgcacaagccacctttcgtatggg 49305

                                                                         
Query: 404   tgcagtcaatctgcatcattgaatacttcaggctggtcagctcatccgagttcgagatga 463
             |||| |||||||||| ||||||  |||| ||  |  | ||||| |||||||||   |  |
Sbjct: 49304 tgcaatcaatctgcaacattgagaacttgagcttcataagctcgtccgagttcagtacaa 49245

                                                                         
Query: 464   caaaatcaccaacatgatagagaatccagcttcccggtccatctagataatactccgacg 523
             ||||||||||||||||||| || |||||||||||   |   ||||||||||| || || |
Sbjct: 49244 caaaatcaccaacatgataaagtatccagcttccttcttgttctagataatattctgatg 49185

                                                                         
Query: 524   tcgcctgctgttcgtccgatgttgatagctggaaccgggtgggtctggcatcccacccat 583
             | || || ||||| || || ||||| ||||| ||||| |||||| |||| ||||||||||
Sbjct: 49184 tagcatgttgttcatctgaagttgagagctgaaaccgtgtgggtttggcttcccacccat 49125

              
Query: 584   g 584
             |
Sbjct: 49124 g 49124
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>dbj|AK100726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117D20, full
            insert sequence
          Length = 1834

 Score =  129 bits (65), Expect = 1e-26
 Identities = 197/241 (81%)
 Strand = Plus / Minus

                                                                        
Query: 344  gccgataccctttcggatatatcacaactgaatcaacgcagagaccacctttcgtgtggg 403
            ||||||||||||| |||||||||| ||||||||||||||| |  ||||||||||| ||||
Sbjct: 1444 gccgatacccttttggatatatcaaaactgaatcaacgcacaagccacctttcgtatggg 1385

                                                                        
Query: 404  tgcagtcaatctgcatcattgaatacttcaggctggtcagctcatccgagttcgagatga 463
            |||| |||||||||| ||||||  |||| ||  |  | ||||| |||||||||   |  |
Sbjct: 1384 tgcaatcaatctgcaacattgagaacttgagcttcataagctcgtccgagttcagtacaa 1325

                                                                        
Query: 464  caaaatcaccaacatgatagagaatccagcttcccggtccatctagataatactccgacg 523
            ||||||||||||||||||| || |||||||||||   |   ||||||||||| || || |
Sbjct: 1324 caaaatcaccaacatgataaagtatccagcttccttcttgttctagataatattctgatg 1265

                                                                        
Query: 524  tcgcctgctgttcgtccgatgttgatagctggaaccgggtgggtctggcatcccacccat 583
            | || || ||||| || || ||||| ||||| ||||| |||||| |||| ||||||||||
Sbjct: 1264 tagcatgttgttcatctgaagttgagagctgaaaccgtgtgggtttggcttcccacccat 1205

             
Query: 584  g 584
            |
Sbjct: 1204 g 1204
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>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0056G13, complete sequence
          Length = 148011

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                         
Query: 352   cctttcggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtca 411
             ||||| ||||| ||||  |||||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 79540 cctttgggataaatcagcactgaatcgacgcagagaccacctttcgtatgggtgcagtcg 79481

                  
Query: 412   atctg 416
             |||||
Sbjct: 79480 atctg 79476



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 466   aaatcaccaacatgatagagaatccagcttcc 497
             |||||||||||||| || ||||||||||||||
Sbjct: 79426 aaatcaccaacatggtaaagaatccagcttcc 79395
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                          
Query: 352    cctttcggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtca 411
              ||||| ||||| ||||  |||||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 924343 cctttgggataaatcagcactgaatcgacgcagagaccacctttcgtatgggtgcagtcg 924284

                   
Query: 412    atctg 416
              |||||
Sbjct: 924283 atctg 924279



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 466    aaatcaccaacatgatagagaatccagcttcc 497
              |||||||||||||| || ||||||||||||||
Sbjct: 924229 aaatcaccaacatggtaaagaatccagcttcc 924198
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                          
Query: 352    cctttcggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtca 411
              ||||| ||||| ||||  |||||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 924341 cctttgggataaatcagcactgaatcgacgcagagaccacctttcgtatgggtgcagtcg 924282

                   
Query: 412    atctg 416
              |||||
Sbjct: 924281 atctg 924277



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 466    aaatcaccaacatgatagagaatccagcttcc 497
              |||||||||||||| || ||||||||||||||
Sbjct: 924227 aaatcaccaacatggtaaagaatccagcttcc 924196
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>dbj|AK106276.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-H04, full
            insert sequence
          Length = 1621

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                        
Query: 352  cctttcggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtca 411
            ||||| ||||| ||||  |||||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 1286 cctttgggataaatcagcactgaatcgacgcagagaccacctttcgtatgggtgcagtcg 1227

                 
Query: 412  atctg 416
            |||||
Sbjct: 1226 atctg 1222



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 466  aaatcaccaacatgatagagaatccagcttcc 497
            |||||||||||||| || ||||||||||||||
Sbjct: 1172 aaatcaccaacatggtaaagaatccagcttcc 1141
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>ref|XM_473560.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 840

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                       
Query: 358 ggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtcaatctgc 417
           |||||||| | ||| ||||||||||| ||||| ||||| || ||||| || |||||||||
Sbjct: 800 ggatatataaaaacagaatcaacgcatagaccgccttttgtatgggtacaatcaatctgc 741

                
Query: 418 atcat 422
           |||||
Sbjct: 740 atcat 736
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>emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088I22,
             complete sequence
          Length = 164572

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 358   ggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtcaatctgc 417
             |||||||| | ||| ||||||||||| ||||| ||||| || ||||| || |||||||||
Sbjct: 63704 ggatatataaaaacagaatcaacgcatagaccgccttttgtatgggtacaatcaatctgc 63763

                  
Query: 418   atcat 422
             |||||
Sbjct: 63764 atcat 63768
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                            
Query: 358      ggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtcaatctgc 417
                |||||||| | ||| ||||||||||| ||||| ||||| || ||||| || |||||||||
Sbjct: 28727254 ggatatataaaaacagaatcaacgcatagaccgccttttgtatgggtacaatcaatctgc 28727195

                     
Query: 418      atcat 422
                |||||
Sbjct: 28727194 atcat 28727190
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>dbj|AK099216.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081J09, full
            insert sequence
          Length = 1684

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 358  ggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtcaatctgc 417
            |||||||| | ||| ||||||||||| ||||| ||||| || ||||| || |||||||||
Sbjct: 1275 ggatatataaaaacagaatcaacgcatagaccgccttttgtatgggtacaatcaatctgc 1216

                 
Query: 418  atcat 422
            |||||
Sbjct: 1215 atcat 1211
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>dbj|AK064611.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-B11, full
            insert sequence
          Length = 1715

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 358  ggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtcaatctgc 417
            |||||||| | ||| ||||||||||| ||||| ||||| || ||||| || |||||||||
Sbjct: 1306 ggatatataaaaacagaatcaacgcatagaccgccttttgtatgggtacaatcaatctgc 1247

                 
Query: 418  atcat 422
            |||||
Sbjct: 1246 atcat 1242
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>gb|AY106517.1| Zea mays PCO071075 mRNA sequence
          Length = 1699

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 373  gaatcaacgcagagaccacctttcgtgtgggtgcagtcaatctgcatcat 422
            ||||| |||||||| || ||||||||||| |||||||| ||||| |||||
Sbjct: 1371 gaatccacgcagaggccgcctttcgtgtgcgtgcagtctatctgaatcat 1322
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>gb|AF488721.1| Human calicivirus NLV/Eger/HUNs19/2000/HUN RNA-dependent RNA
           polymerase gene, partial cds
          Length = 274

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 457 gagatgacaaaatcaccaacat 478
           ||||||||||||||||||||||
Sbjct: 132 gagatgacaaaatcaccaacat 111
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>gb|AF325777.1|AF325777 Human calicivirus NLV/Oberschleissheim 102/1999/DE RNA-dependent
           RNA polymerase gene, partial cds
          Length = 300

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 457 gagatgacaaaatcaccaacat 478
           ||||||||||||||||||||||
Sbjct: 137 gagatgacaaaatcaccaacat 116
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>gb|AF312512.1|AF312512 Human calicivirus NLV/Laucha 403/1999/DE RNA-dependent RNA
           polymerase gene, partial cds
          Length = 237

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 457 gagatgacaaaatcaccaacat 478
           ||||||||||||||||||||||
Sbjct: 109 gagatgacaaaatcaccaacat 88
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>gb|AC163351.2| Mus musculus BAC clone RP23-150D4 from chromosome 13, complete sequence
          Length = 214062

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 252   tagccatctccctctgaattg 272
             |||||||||||||||||||||
Sbjct: 87956 tagccatctccctctgaattg 87976
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>ref|XM_949165.1| Theileria annulata strain Ankara hypothetical protein (TA20495)
            partial mRNA
          Length = 5181

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 146  acactacaaagaatacaggacaaaatgca 174
            |||| |||| |||||||||||||||||||
Sbjct: 1862 acaccacaatgaatacaggacaaaatgca 1890
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>emb|X69944.1|NVRARD1AB N.viridescens retinoic acid receptor delta 1a and 1b cDNA
          Length = 2424

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 18   atgctgatgaaaattacagat 38
            |||||||||||||||||||||
Sbjct: 1984 atgctgatgaaaattacagat 2004
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>emb|X17586.1|NVRARDG Newt mRNA for retinoic receptor delta (RAR-delta)
          Length = 1600

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 18   atgctgatgaaaattacagat 38
            |||||||||||||||||||||
Sbjct: 1160 atgctgatgaaaattacagat 1180
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>gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 177115

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 162   aggacaaaatgcaaaactctcatcagaaa 190
             |||||||| ||||||| ||||||||||||
Sbjct: 10637 aggacaaattgcaaaaatctcatcagaaa 10665
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>gb|BT024143.1| Zea mays clone EL01N0442F12 mRNA sequence
          Length = 2013

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 443  gctcatccgagttcgagatgacaaaatcaccaacatg 479
            ||||||| || || || ||||||||||||||||||||
Sbjct: 1393 gctcatcggaatttgatatgacaaaatcaccaacatg 1357
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>gb|AY111039.1| Zea mays CL21532_1 mRNA sequence
          Length = 936

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 443 gctcatccgagttcgagatgacaaaatcaccaacatg 479
           ||||||| || || || ||||||||||||||||||||
Sbjct: 616 gctcatcggaatttgatatgacaaaatcaccaacatg 652
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>emb|AL713863.7| Mouse DNA sequence from clone RP23-330I16 on chromosome X, complete
              sequence
          Length = 203422

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 178    ctctcatcagaaaggaagaag 198
              |||||||||||||||||||||
Sbjct: 147539 ctctcatcagaaaggaagaag 147559
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 272     gcctcgtgttgctgcagcat 291
               ||||||||||||||||||||
Sbjct: 1920862 gcctcgtgttgctgcagcat 1920843
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 272     gcctcgtgttgctgcagcat 291
               ||||||||||||||||||||
Sbjct: 1509038 gcctcgtgttgctgcagcat 1509057
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>gb|AC002303.1|HUAC002303 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-670B5  ~complete genomic
              sequence, complete sequence
          Length = 131530

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    actacaaagaatacaggaca 167
              ||||||||||||||||||||
Sbjct: 123018 actacaaagaatacaggaca 122999
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>emb|CR762407.8| Zebrafish DNA sequence from clone DKEY-262N17 in linkage group 6,
             complete sequence
          Length = 146422

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   ctgcaaaatcacatcacatg 321
             ||||||||||||||||||||
Sbjct: 98212 ctgcaaaatcacatcacatg 98231
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>gb|AC114553.6| Mus musculus chromosome 5, clone RP23-408M16, complete sequence
          Length = 198281

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    cagataagaatgaacaggaa 245
              ||||||||||||||||||||
Sbjct: 141054 cagataagaatgaacaggaa 141035
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>gb|AC151902.3| Mus musculus BAC clone RP23-240L13 from chromosome 14, complete
             sequence
          Length = 170417

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   ctctcatcagaaaggaagaa 197
             ||||||||||||||||||||
Sbjct: 85017 ctctcatcagaaaggaagaa 84998
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>emb|CR391949.7| Zebrafish DNA sequence from clone CH211-149B20 in linkage group 9,
             complete sequence
          Length = 162252

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   ctgcaaaatcacatcacatg 321
             ||||||||||||||||||||
Sbjct: 50170 ctgcaaaatcacatcacatg 50151
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>emb|CR846093.9| Zebrafish DNA sequence from clone DKEY-88P16 in linkage group 25,
             complete sequence
          Length = 214328

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   ctgcaaaatcacatcacatg 321
             ||||||||||||||||||||
Sbjct: 44696 ctgcaaaatcacatcacatg 44715
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 272     gcctcgtgttgctgcagcat 291
               ||||||||||||||||||||
Sbjct: 1396126 gcctcgtgttgctgcagcat 1396145
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>emb|AL845326.5| Zebrafish DNA sequence from clone CH211-191D15 in linkage group 5
             Contains a novel gene similar to mouse and Xenopus laevis
             CORO1A (coronin, actin binding protein 1A), three novel
             genes, a novel gene similar to human and mouse NIFU
             (nitrogen fixation cluster-like) and a CpG island,
             complete sequence
          Length = 143528

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   ctgcaaaatcacatcacatg 321
             ||||||||||||||||||||
Sbjct: 63945 ctgcaaaatcacatcacatg 63926
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>emb|AL831791.5| Zebrafish DNA sequence from clone DKEY-76P14 in linkage group 11
             Contains a novel gene similar to human and rodent RRAD
             (Ras-related protein associated with diabetes), a novel
             gene, a novel gene similar to mouse PNP (purine-nucleoside
             phosphorylase), a novel gene similar to human and rodent
             SOX11 (SRY (sex determining region Y)-box 11) and a CpG
             island, complete sequence
          Length = 204498

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   ctgcaaaatcacatcacatg 321
             ||||||||||||||||||||
Sbjct: 43376 ctgcaaaatcacatcacatg 43395
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>emb|CR812486.5| Zebrafish DNA sequence from clone DKEYP-50C7 in linkage group 14,
             complete sequence
          Length = 58222

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   ctgcaaaatcacatcacatg 321
             ||||||||||||||||||||
Sbjct: 47573 ctgcaaaatcacatcacatg 47554
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>emb|BX511122.4| Zebrafish DNA sequence from clone CH211-129H1 in linkage group 7,
             complete sequence
          Length = 56808

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   ctgcaaaatcacatcacatg 321
             ||||||||||||||||||||
Sbjct: 31286 ctgcaaaatcacatcacatg 31305
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>emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 in linkage group 5,
              complete sequence
          Length = 142908

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    ctgcaaaatcacatcacatg 321
              ||||||||||||||||||||
Sbjct: 128388 ctgcaaaatcacatcacatg 128407
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>emb|BX470212.6| Zebrafish DNA sequence from clone CH211-229H7 in linkage group 14,
             complete sequence
          Length = 94121

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   ctgcaaaatcacatcacatg 321
             ||||||||||||||||||||
Sbjct: 53116 ctgcaaaatcacatcacatg 53097
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>gb|AC025275.4|AC025275 Homo sapiens chromosome 16 clone CTC-502C3, complete sequence
          Length = 94850

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   actacaaagaatacaggaca 167
             ||||||||||||||||||||
Sbjct: 41472 actacaaagaatacaggaca 41491
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>emb|BX664629.10| Zebrafish DNA sequence from clone DKEY-30G10 in linkage group 22,
             complete sequence
          Length = 256437

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   ctgcaaaatcacatcacatg 321
             ||||||||||||||||||||
Sbjct: 55042 ctgcaaaatcacatcacatg 55023
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>emb|BX255962.9| Zebrafish DNA sequence from clone CH211-269C21 in linkage group 25,
             complete sequence
          Length = 151830

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   ctgcaaaatcacatcacatg 321
             ||||||||||||||||||||
Sbjct: 45859 ctgcaaaatcacatcacatg 45840
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>emb|BX571825.6| Zebrafish DNA sequence from clone DKEY-158E13 in linkage group 18,
             complete sequence
          Length = 200814

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   ctgcaaaatcacatcacatg 321
             ||||||||||||||||||||
Sbjct: 20908 ctgcaaaatcacatcacatg 20927
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>emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-736L22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171699

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 464   caaaatcaccaacatgatagagaa 487
             |||||||||||||||| |||||||
Sbjct: 58390 caaaatcaccaacatggtagagaa 58367
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>emb|AL445383.5|CNS07ECZ Human chromosome 14 DNA sequence BAC R-88E18 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 172914

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 464    caaaatcaccaacatgatagagaa 487
              |||||||||||||||| |||||||
Sbjct: 159813 caaaatcaccaacatggtagagaa 159790
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>emb|BX537133.3| Zebrafish DNA sequence from clone DKEY-90M5 in linkage group 20,
             complete sequence
          Length = 249791

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   ctgcaaaatcacatcacatg 321
             ||||||||||||||||||||
Sbjct: 43193 ctgcaaaatcacatcacatg 43212
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>emb|BX470234.8| Zebrafish DNA sequence from clone DKEY-94N12 in linkage group 22,
             complete sequence
          Length = 149941

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   ctgcaaaatcacatcacatg 321
             ||||||||||||||||||||
Sbjct: 29361 ctgcaaaatcacatcacatg 29380
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>emb|CR293517.8| Zebrafish DNA sequence from clone CH211-203D21 in linkage group 7,
             complete sequence
          Length = 78112

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   ctgcaaaatcacatcacatg 321
             ||||||||||||||||||||
Sbjct: 16843 ctgcaaaatcacatcacatg 16824
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>emb|CR925820.5| Zebrafish DNA sequence from clone CH211-22E9 in linkage group 10,
             complete sequence
          Length = 173023

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   tctgcaaaatcacatcacat 320
             ||||||||||||||||||||
Sbjct: 76087 tctgcaaaatcacatcacat 76068
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>emb|BX005218.6| Zebrafish DNA sequence from clone CH211-127L12 in linkage group 14,
              complete sequence
          Length = 183670

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    ctgcaaaatcacatcacatg 321
              ||||||||||||||||||||
Sbjct: 103906 ctgcaaaatcacatcacatg 103887
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>emb|BX000489.8| Zebrafish DNA sequence from clone CH211-215E19, complete sequence
          Length = 201748

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    ctgcaaaatcacatcacatg 321
              ||||||||||||||||||||
Sbjct: 193768 ctgcaaaatcacatcacatg 193787
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>emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, complete sequence
          Length = 180436

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   tctgcaaaatcacatcacat 320
             ||||||||||||||||||||
Sbjct: 18580 tctgcaaaatcacatcacat 18599
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>emb|AL928954.9| Zebrafish DNA sequence from clone CH211-127D4 in linkage group 5,
              complete sequence
          Length = 222888

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    ctgcaaaatcacatcacatg 321
              ||||||||||||||||||||
Sbjct: 217590 ctgcaaaatcacatcacatg 217571
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>gb|U47048.1|ECU47048 Escherichia coli microcin 24 region, DNA binding protein (mdbA),
           immunity protein (mtfI), microcin 24 (mtfS), and
           microcin transport protein (mtfA, mtfB) genes, complete
           cds
          Length = 5267

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 154 aagaatacaggacaaaatgcaaaa 177
           |||||||||||| |||||||||||
Sbjct: 891 aagaatacaggagaaaatgcaaaa 868
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>emb|AL672190.14| Mouse DNA sequence from clone RP23-150G4 on chromosome X, complete
             sequence
          Length = 198693

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   cttctagatcttccctaccc 129
             ||||||||||||||||||||
Sbjct: 49628 cttctagatcttccctaccc 49609


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,884,599
Number of Sequences: 3902068
Number of extensions: 4884599
Number of successful extensions: 84028
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83744
Number of HSP's gapped (non-prelim): 282
length of query: 589
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 566
effective length of database: 17,143,297,704
effective search space: 9703106500464
effective search space used: 9703106500464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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