Clone Name | rbah61c24 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 129 bits (65), Expect = 1e-26 Identities = 197/241 (81%) Strand = Plus / Minus Query: 344 gccgataccctttcggatatatcacaactgaatcaacgcagagaccacctttcgtgtggg 403 ||||||||||||| |||||||||| ||||||||||||||| | ||||||||||| |||| Sbjct: 27569695 gccgatacccttttggatatatcaaaactgaatcaacgcacaagccacctttcgtatggg 27569636 Query: 404 tgcagtcaatctgcatcattgaatacttcaggctggtcagctcatccgagttcgagatga 463 |||| |||||||||| |||||| |||| || | | ||||| ||||||||| | | Sbjct: 27569635 tgcaatcaatctgcaacattgagaacttgagcttcataagctcgtccgagttcagtacaa 27569576 Query: 464 caaaatcaccaacatgatagagaatccagcttcccggtccatctagataatactccgacg 523 ||||||||||||||||||| || ||||||||||| | ||||||||||| || || | Sbjct: 27569575 caaaatcaccaacatgataaagtatccagcttccttcttgttctagataatattctgatg 27569516 Query: 524 tcgcctgctgttcgtccgatgttgatagctggaaccgggtgggtctggcatcccacccat 583 | || || ||||| || || ||||| ||||| ||||| |||||| |||| |||||||||| Sbjct: 27569515 tagcatgttgttcatctgaagttgagagctgaaaccgtgtgggtttggcttcccacccat 27569456 Query: 584 g 584 | Sbjct: 27569455 g 27569455
>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0135D07 Length = 170587 Score = 129 bits (65), Expect = 1e-26 Identities = 197/241 (81%) Strand = Plus / Minus Query: 344 gccgataccctttcggatatatcacaactgaatcaacgcagagaccacctttcgtgtggg 403 ||||||||||||| |||||||||| ||||||||||||||| | ||||||||||| |||| Sbjct: 49364 gccgatacccttttggatatatcaaaactgaatcaacgcacaagccacctttcgtatggg 49305 Query: 404 tgcagtcaatctgcatcattgaatacttcaggctggtcagctcatccgagttcgagatga 463 |||| |||||||||| |||||| |||| || | | ||||| ||||||||| | | Sbjct: 49304 tgcaatcaatctgcaacattgagaacttgagcttcataagctcgtccgagttcagtacaa 49245 Query: 464 caaaatcaccaacatgatagagaatccagcttcccggtccatctagataatactccgacg 523 ||||||||||||||||||| || ||||||||||| | ||||||||||| || || | Sbjct: 49244 caaaatcaccaacatgataaagtatccagcttccttcttgttctagataatattctgatg 49185 Query: 524 tcgcctgctgttcgtccgatgttgatagctggaaccgggtgggtctggcatcccacccat 583 | || || ||||| || || ||||| ||||| ||||| |||||| |||| |||||||||| Sbjct: 49184 tagcatgttgttcatctgaagttgagagctgaaaccgtgtgggtttggcttcccacccat 49125 Query: 584 g 584 | Sbjct: 49124 g 49124
>dbj|AK100726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117D20, full insert sequence Length = 1834 Score = 129 bits (65), Expect = 1e-26 Identities = 197/241 (81%) Strand = Plus / Minus Query: 344 gccgataccctttcggatatatcacaactgaatcaacgcagagaccacctttcgtgtggg 403 ||||||||||||| |||||||||| ||||||||||||||| | ||||||||||| |||| Sbjct: 1444 gccgatacccttttggatatatcaaaactgaatcaacgcacaagccacctttcgtatggg 1385 Query: 404 tgcagtcaatctgcatcattgaatacttcaggctggtcagctcatccgagttcgagatga 463 |||| |||||||||| |||||| |||| || | | ||||| ||||||||| | | Sbjct: 1384 tgcaatcaatctgcaacattgagaacttgagcttcataagctcgtccgagttcagtacaa 1325 Query: 464 caaaatcaccaacatgatagagaatccagcttcccggtccatctagataatactccgacg 523 ||||||||||||||||||| || ||||||||||| | ||||||||||| || || | Sbjct: 1324 caaaatcaccaacatgataaagtatccagcttccttcttgttctagataatattctgatg 1265 Query: 524 tcgcctgctgttcgtccgatgttgatagctggaaccgggtgggtctggcatcccacccat 583 | || || ||||| || || ||||| ||||| ||||| |||||| |||| |||||||||| Sbjct: 1264 tagcatgttgttcatctgaagttgagagctgaaaccgtgtgggtttggcttcccacccat 1205 Query: 584 g 584 | Sbjct: 1204 g 1204
>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0056G13, complete sequence Length = 148011 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 352 cctttcggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtca 411 ||||| ||||| |||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct: 79540 cctttgggataaatcagcactgaatcgacgcagagaccacctttcgtatgggtgcagtcg 79481 Query: 412 atctg 416 ||||| Sbjct: 79480 atctg 79476 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 466 aaatcaccaacatgatagagaatccagcttcc 497 |||||||||||||| || |||||||||||||| Sbjct: 79426 aaatcaccaacatggtaaagaatccagcttcc 79395
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 352 cctttcggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtca 411 ||||| ||||| |||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct: 924343 cctttgggataaatcagcactgaatcgacgcagagaccacctttcgtatgggtgcagtcg 924284 Query: 412 atctg 416 ||||| Sbjct: 924283 atctg 924279 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 466 aaatcaccaacatgatagagaatccagcttcc 497 |||||||||||||| || |||||||||||||| Sbjct: 924229 aaatcaccaacatggtaaagaatccagcttcc 924198
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 352 cctttcggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtca 411 ||||| ||||| |||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct: 924341 cctttgggataaatcagcactgaatcgacgcagagaccacctttcgtatgggtgcagtcg 924282 Query: 412 atctg 416 ||||| Sbjct: 924281 atctg 924277 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 466 aaatcaccaacatgatagagaatccagcttcc 497 |||||||||||||| || |||||||||||||| Sbjct: 924227 aaatcaccaacatggtaaagaatccagcttcc 924196
>dbj|AK106276.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-H04, full insert sequence Length = 1621 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 352 cctttcggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtca 411 ||||| ||||| |||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1286 cctttgggataaatcagcactgaatcgacgcagagaccacctttcgtatgggtgcagtcg 1227 Query: 412 atctg 416 ||||| Sbjct: 1226 atctg 1222 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 466 aaatcaccaacatgatagagaatccagcttcc 497 |||||||||||||| || |||||||||||||| Sbjct: 1172 aaatcaccaacatggtaaagaatccagcttcc 1141
>ref|XM_473560.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 840 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 358 ggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtcaatctgc 417 |||||||| | ||| ||||||||||| ||||| ||||| || ||||| || ||||||||| Sbjct: 800 ggatatataaaaacagaatcaacgcatagaccgccttttgtatgggtacaatcaatctgc 741 Query: 418 atcat 422 ||||| Sbjct: 740 atcat 736
>emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088I22, complete sequence Length = 164572 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 358 ggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtcaatctgc 417 |||||||| | ||| ||||||||||| ||||| ||||| || ||||| || ||||||||| Sbjct: 63704 ggatatataaaaacagaatcaacgcatagaccgccttttgtatgggtacaatcaatctgc 63763 Query: 418 atcat 422 ||||| Sbjct: 63764 atcat 63768
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 358 ggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtcaatctgc 417 |||||||| | ||| ||||||||||| ||||| ||||| || ||||| || ||||||||| Sbjct: 28727254 ggatatataaaaacagaatcaacgcatagaccgccttttgtatgggtacaatcaatctgc 28727195 Query: 418 atcat 422 ||||| Sbjct: 28727194 atcat 28727190
>dbj|AK099216.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081J09, full insert sequence Length = 1684 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 358 ggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtcaatctgc 417 |||||||| | ||| ||||||||||| ||||| ||||| || ||||| || ||||||||| Sbjct: 1275 ggatatataaaaacagaatcaacgcatagaccgccttttgtatgggtacaatcaatctgc 1216 Query: 418 atcat 422 ||||| Sbjct: 1215 atcat 1211
>dbj|AK064611.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-B11, full insert sequence Length = 1715 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 358 ggatatatcacaactgaatcaacgcagagaccacctttcgtgtgggtgcagtcaatctgc 417 |||||||| | ||| ||||||||||| ||||| ||||| || ||||| || ||||||||| Sbjct: 1306 ggatatataaaaacagaatcaacgcatagaccgccttttgtatgggtacaatcaatctgc 1247 Query: 418 atcat 422 ||||| Sbjct: 1246 atcat 1242
>gb|AY106517.1| Zea mays PCO071075 mRNA sequence Length = 1699 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 373 gaatcaacgcagagaccacctttcgtgtgggtgcagtcaatctgcatcat 422 ||||| |||||||| || ||||||||||| |||||||| ||||| ||||| Sbjct: 1371 gaatccacgcagaggccgcctttcgtgtgcgtgcagtctatctgaatcat 1322
>gb|AF488721.1| Human calicivirus NLV/Eger/HUNs19/2000/HUN RNA-dependent RNA polymerase gene, partial cds Length = 274 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 457 gagatgacaaaatcaccaacat 478 |||||||||||||||||||||| Sbjct: 132 gagatgacaaaatcaccaacat 111
>gb|AF325777.1|AF325777 Human calicivirus NLV/Oberschleissheim 102/1999/DE RNA-dependent RNA polymerase gene, partial cds Length = 300 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 457 gagatgacaaaatcaccaacat 478 |||||||||||||||||||||| Sbjct: 137 gagatgacaaaatcaccaacat 116
>gb|AF312512.1|AF312512 Human calicivirus NLV/Laucha 403/1999/DE RNA-dependent RNA polymerase gene, partial cds Length = 237 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 457 gagatgacaaaatcaccaacat 478 |||||||||||||||||||||| Sbjct: 109 gagatgacaaaatcaccaacat 88
>gb|AC163351.2| Mus musculus BAC clone RP23-150D4 from chromosome 13, complete sequence Length = 214062 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 tagccatctccctctgaattg 272 ||||||||||||||||||||| Sbjct: 87956 tagccatctccctctgaattg 87976
>ref|XM_949165.1| Theileria annulata strain Ankara hypothetical protein (TA20495) partial mRNA Length = 5181 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 146 acactacaaagaatacaggacaaaatgca 174 |||| |||| ||||||||||||||||||| Sbjct: 1862 acaccacaatgaatacaggacaaaatgca 1890
>emb|X69944.1|NVRARD1AB N.viridescens retinoic acid receptor delta 1a and 1b cDNA Length = 2424 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 18 atgctgatgaaaattacagat 38 ||||||||||||||||||||| Sbjct: 1984 atgctgatgaaaattacagat 2004
>emb|X17586.1|NVRARDG Newt mRNA for retinoic receptor delta (RAR-delta) Length = 1600 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 18 atgctgatgaaaattacagat 38 ||||||||||||||||||||| Sbjct: 1160 atgctgatgaaaattacagat 1180
>gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177115 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 162 aggacaaaatgcaaaactctcatcagaaa 190 |||||||| ||||||| |||||||||||| Sbjct: 10637 aggacaaattgcaaaaatctcatcagaaa 10665
>gb|BT024143.1| Zea mays clone EL01N0442F12 mRNA sequence Length = 2013 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Minus Query: 443 gctcatccgagttcgagatgacaaaatcaccaacatg 479 ||||||| || || || |||||||||||||||||||| Sbjct: 1393 gctcatcggaatttgatatgacaaaatcaccaacatg 1357
>gb|AY111039.1| Zea mays CL21532_1 mRNA sequence Length = 936 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 443 gctcatccgagttcgagatgacaaaatcaccaacatg 479 ||||||| || || || |||||||||||||||||||| Sbjct: 616 gctcatcggaatttgatatgacaaaatcaccaacatg 652
>emb|AL713863.7| Mouse DNA sequence from clone RP23-330I16 on chromosome X, complete sequence Length = 203422 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 ctctcatcagaaaggaagaag 198 ||||||||||||||||||||| Sbjct: 147539 ctctcatcagaaaggaagaag 147559
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 gcctcgtgttgctgcagcat 291 |||||||||||||||||||| Sbjct: 1920862 gcctcgtgttgctgcagcat 1920843
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 gcctcgtgttgctgcagcat 291 |||||||||||||||||||| Sbjct: 1509038 gcctcgtgttgctgcagcat 1509057
>gb|AC002303.1|HUAC002303 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-670B5 ~complete genomic sequence, complete sequence Length = 131530 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 actacaaagaatacaggaca 167 |||||||||||||||||||| Sbjct: 123018 actacaaagaatacaggaca 122999
>emb|CR762407.8| Zebrafish DNA sequence from clone DKEY-262N17 in linkage group 6, complete sequence Length = 146422 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 98212 ctgcaaaatcacatcacatg 98231
>gb|AC114553.6| Mus musculus chromosome 5, clone RP23-408M16, complete sequence Length = 198281 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cagataagaatgaacaggaa 245 |||||||||||||||||||| Sbjct: 141054 cagataagaatgaacaggaa 141035
>gb|AC151902.3| Mus musculus BAC clone RP23-240L13 from chromosome 14, complete sequence Length = 170417 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ctctcatcagaaaggaagaa 197 |||||||||||||||||||| Sbjct: 85017 ctctcatcagaaaggaagaa 84998
>emb|CR391949.7| Zebrafish DNA sequence from clone CH211-149B20 in linkage group 9, complete sequence Length = 162252 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 50170 ctgcaaaatcacatcacatg 50151
>emb|CR846093.9| Zebrafish DNA sequence from clone DKEY-88P16 in linkage group 25, complete sequence Length = 214328 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 44696 ctgcaaaatcacatcacatg 44715
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 gcctcgtgttgctgcagcat 291 |||||||||||||||||||| Sbjct: 1396126 gcctcgtgttgctgcagcat 1396145
>emb|AL845326.5| Zebrafish DNA sequence from clone CH211-191D15 in linkage group 5 Contains a novel gene similar to mouse and Xenopus laevis CORO1A (coronin, actin binding protein 1A), three novel genes, a novel gene similar to human and mouse NIFU (nitrogen fixation cluster-like) and a CpG island, complete sequence Length = 143528 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 63945 ctgcaaaatcacatcacatg 63926
>emb|AL831791.5| Zebrafish DNA sequence from clone DKEY-76P14 in linkage group 11 Contains a novel gene similar to human and rodent RRAD (Ras-related protein associated with diabetes), a novel gene, a novel gene similar to mouse PNP (purine-nucleoside phosphorylase), a novel gene similar to human and rodent SOX11 (SRY (sex determining region Y)-box 11) and a CpG island, complete sequence Length = 204498 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 43376 ctgcaaaatcacatcacatg 43395
>emb|CR812486.5| Zebrafish DNA sequence from clone DKEYP-50C7 in linkage group 14, complete sequence Length = 58222 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 47573 ctgcaaaatcacatcacatg 47554
>emb|BX511122.4| Zebrafish DNA sequence from clone CH211-129H1 in linkage group 7, complete sequence Length = 56808 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 31286 ctgcaaaatcacatcacatg 31305
>emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 in linkage group 5, complete sequence Length = 142908 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 128388 ctgcaaaatcacatcacatg 128407
>emb|BX470212.6| Zebrafish DNA sequence from clone CH211-229H7 in linkage group 14, complete sequence Length = 94121 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 53116 ctgcaaaatcacatcacatg 53097
>gb|AC025275.4|AC025275 Homo sapiens chromosome 16 clone CTC-502C3, complete sequence Length = 94850 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 actacaaagaatacaggaca 167 |||||||||||||||||||| Sbjct: 41472 actacaaagaatacaggaca 41491
>emb|BX664629.10| Zebrafish DNA sequence from clone DKEY-30G10 in linkage group 22, complete sequence Length = 256437 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 55042 ctgcaaaatcacatcacatg 55023
>emb|BX255962.9| Zebrafish DNA sequence from clone CH211-269C21 in linkage group 25, complete sequence Length = 151830 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 45859 ctgcaaaatcacatcacatg 45840
>emb|BX571825.6| Zebrafish DNA sequence from clone DKEY-158E13 in linkage group 18, complete sequence Length = 200814 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 20908 ctgcaaaatcacatcacatg 20927
>emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-736L22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171699 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 464 caaaatcaccaacatgatagagaa 487 |||||||||||||||| ||||||| Sbjct: 58390 caaaatcaccaacatggtagagaa 58367
>emb|AL445383.5|CNS07ECZ Human chromosome 14 DNA sequence BAC R-88E18 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 172914 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 464 caaaatcaccaacatgatagagaa 487 |||||||||||||||| ||||||| Sbjct: 159813 caaaatcaccaacatggtagagaa 159790
>emb|BX537133.3| Zebrafish DNA sequence from clone DKEY-90M5 in linkage group 20, complete sequence Length = 249791 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 43193 ctgcaaaatcacatcacatg 43212
>emb|BX470234.8| Zebrafish DNA sequence from clone DKEY-94N12 in linkage group 22, complete sequence Length = 149941 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 29361 ctgcaaaatcacatcacatg 29380
>emb|CR293517.8| Zebrafish DNA sequence from clone CH211-203D21 in linkage group 7, complete sequence Length = 78112 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 16843 ctgcaaaatcacatcacatg 16824
>emb|CR925820.5| Zebrafish DNA sequence from clone CH211-22E9 in linkage group 10, complete sequence Length = 173023 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 tctgcaaaatcacatcacat 320 |||||||||||||||||||| Sbjct: 76087 tctgcaaaatcacatcacat 76068
>emb|BX005218.6| Zebrafish DNA sequence from clone CH211-127L12 in linkage group 14, complete sequence Length = 183670 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 103906 ctgcaaaatcacatcacatg 103887
>emb|BX000489.8| Zebrafish DNA sequence from clone CH211-215E19, complete sequence Length = 201748 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 193768 ctgcaaaatcacatcacatg 193787
>emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, complete sequence Length = 180436 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tctgcaaaatcacatcacat 320 |||||||||||||||||||| Sbjct: 18580 tctgcaaaatcacatcacat 18599
>emb|AL928954.9| Zebrafish DNA sequence from clone CH211-127D4 in linkage group 5, complete sequence Length = 222888 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 ctgcaaaatcacatcacatg 321 |||||||||||||||||||| Sbjct: 217590 ctgcaaaatcacatcacatg 217571
>gb|U47048.1|ECU47048 Escherichia coli microcin 24 region, DNA binding protein (mdbA), immunity protein (mtfI), microcin 24 (mtfS), and microcin transport protein (mtfA, mtfB) genes, complete cds Length = 5267 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 aagaatacaggacaaaatgcaaaa 177 |||||||||||| ||||||||||| Sbjct: 891 aagaatacaggagaaaatgcaaaa 868
>emb|AL672190.14| Mouse DNA sequence from clone RP23-150G4 on chromosome X, complete sequence Length = 198693 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cttctagatcttccctaccc 129 |||||||||||||||||||| Sbjct: 49628 cttctagatcttccctaccc 49609 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,884,599 Number of Sequences: 3902068 Number of extensions: 4884599 Number of successful extensions: 84028 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83744 Number of HSP's gapped (non-prelim): 282 length of query: 589 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 566 effective length of database: 17,143,297,704 effective search space: 9703106500464 effective search space used: 9703106500464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)