Clone Name | rbah61c20 |
---|---|
Clone Library Name | barley_pub |
>gb|AY110152.1| Zea mays CL9977_1 mRNA sequence Length = 551 Score = 89.7 bits (45), Expect = 6e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 295 agatgtttcctgaaccagactcccatgttgaggaagctctcgaagtccgaccgcggtata 354 ||||||||| ||||||| || || |||||||||||||| ||||| || |||||||||| | Sbjct: 277 agatgtttcttgaaccataccccaatgttgaggaagctttcgaaatcggaccgcggtaaa 336 Query: 355 tcgatttcgtgcgtgtcctctgggaacat 383 | ||||||||| |||||||||||||||| Sbjct: 337 ttgatttcgtgtatgtcctctgggaacat 365
>ref|NM_196492.1| Oryza sativa (japonica cultivar-group) putative acylaminoacyl-peptidase like protein (OSJNBa0032I20.5), mRNA Length = 2406 Score = 58.0 bits (29), Expect = 2e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 295 agatgtttcctgaaccagactcccatgttgaggaagctctcgaagtccgaccgcggtata 354 ||||| ||| |||||||||| || ||||||||||||||||| || ||||| | ||||| Sbjct: 2375 agatgcttcttgaaccagacaccaatgttgaggaagctctcaaaatccgattgtggtatg 2316 Query: 355 tcgatttcgtgcgtgtcctctgggaacat 383 | |||||| || |||| ||||||||||| Sbjct: 2315 ttgatttcatgtatgtcgtctgggaacat 2287
>dbj|AK066318.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067G13, full insert sequence Length = 2732 Score = 58.0 bits (29), Expect = 2e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 295 agatgtttcctgaaccagactcccatgttgaggaagctctcgaagtccgaccgcggtata 354 ||||| ||| |||||||||| || ||||||||||||||||| || ||||| | ||||| Sbjct: 2427 agatgcttcttgaaccagacaccaatgttgaggaagctctcaaaatccgattgtggtatg 2368 Query: 355 tcgatttcgtgcgtgtcctctgggaacat 383 | |||||| || |||| ||||||||||| Sbjct: 2367 ttgatttcatgtatgtcgtctgggaacat 2339
>dbj|AK061694.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C07, full insert sequence Length = 1252 Score = 58.0 bits (29), Expect = 2e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 295 agatgtttcctgaaccagactcccatgttgaggaagctctcgaagtccgaccgcggtata 354 ||||| ||| |||||||||| || ||||||||||||||||| || ||||| | ||||| Sbjct: 1054 agatgcttcttgaaccagacaccaatgttgaggaagctctcaaaatccgattgtggtatg 995 Query: 355 tcgatttcgtgcgtgtcctctgggaacat 383 | |||||| || |||| ||||||||||| Sbjct: 994 ttgatttcatgtatgtcgtctgggaacat 966
>gb|AF475113.1| Triticum aestivum histone acetyltransferase mRNA, partial cds Length = 339 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 56 ctactccacaaacagaagccaaactcacattgcccaggctgcgtcaac 103 ||||| |||||| |||| |||| ||||| ||||||||||||||||||| Sbjct: 282 ctacttcacaaatagaatccaatctcaccttgcccaggctgcgtcaac 329
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 295 agatgtttcctgaaccagactcccatgttgaggaagctctcgaagtccga 344 ||||| ||| |||||||||| || ||||||||||||||||| || ||||| Sbjct: 14034531 agatgcttcttgaaccagacaccaatgttgaggaagctctcaaaatccga 14034482
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 295 agatgtttcctgaaccagactcccatgttgaggaagctctcgaagtccga 344 ||||| ||| |||||||||| || ||||||||||||||||| || ||||| Sbjct: 50660 agatgcttcttgaaccagacaccaatgttgaggaagctctcaaaatccga 50611
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 295 agatgtttcctgaaccagactcccatgttgaggaagctctcgaagtccga 344 ||||| ||| |||||||||| || ||||||||||||||||| || ||||| Sbjct: 14042773 agatgcttcttgaaccagacaccaatgttgaggaagctctcaaaatccga 14042724
>gb|AC135288.1| Solanum demissum chromosome 5 BAC PGEC219 genomic sequence, complete sequence Length = 124895 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 146 tacgctcataatttgggagaaa 167 |||||||||||||||||||||| Sbjct: 28673 tacgctcataatttgggagaaa 28652
>gb|AC118695.10| Mus musculus chromosome 19, clone RP24-62C10, complete sequence Length = 261979 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 aatcaccaagaagcttcgaagttct 245 |||||||||||||||||| |||||| Sbjct: 138503 aatcaccaagaagcttcggagttct 138527
>gb|AC123694.11| Mus musculus chromosome 10, clone RP23-326O5, complete sequence Length = 214111 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcataatttgggagaaatat 170 |||||||||||||||||||| Sbjct: 119643 tcataatttgggagaaatat 119624
>ref|XM_709207.1| Candida albicans SC5314 hypothetical protein (CaO19.91), mRNA Length = 900 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 125 gttcatttttatcaatctctttacgctc 152 |||| |||||||||||||||||| |||| Sbjct: 253 gttcctttttatcaatctctttatgctc 226
>ref|XM_708931.1| Candida albicans SC5314 hypothetical protein (CaO19.7737), mRNA Length = 900 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 125 gttcatttttatcaatctctttacgctc 152 |||| |||||||||||||||||| |||| Sbjct: 253 gttcctttttatcaatctctttatgctc 226
>emb|AL138721.16| Human DNA sequence from clone RP11-174N3 on chromosome 6 Contains the 3' end of gene KIAA0229 for a novel Ank, SAM (Sterile alpha motif) and Phosphotyrosine interaction (PTB/PID) domain containing protein, the TCP11 gene for t-complex 11 (mouse) and two CpG islands, complete sequence Length = 155539 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 gatgctgttcatttttatcaatct 142 |||||||||||||||| ||||||| Sbjct: 45549 gatgctgttcatttttttcaatct 45526
>emb|AL133321.11| Human DNA sequence from clone RP13-17E1 on chromosome X Contains part of the PCDH11X gene for protocadherin 11 X-linked, complete sequence Length = 170805 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 ataatttgggagaaatatat 172 |||||||||||||||||||| Sbjct: 10084 ataatttgggagaaatatat 10065
>gb|AC009630.14| Homo sapiens chromosome 8, clone RP11-360L9, complete sequence Length = 219622 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 aagacaaaatcaccaagaag 233 |||||||||||||||||||| Sbjct: 85496 aagacaaaatcaccaagaag 85477
>gb|AF386920.1| Bovine rotavirus strain B8 outer capsid protein VP7 gene, complete cds Length = 1062 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ctactactccacaaacagaa 72 |||||||||||||||||||| Sbjct: 875 ctactactccacaaacagaa 894
>gb|AF386916.1| Bovine rotavirus strain Hg2 outer capsid protein VP7 gene, complete cds Length = 1062 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ctactactccacaaacagaa 72 |||||||||||||||||||| Sbjct: 875 ctactactccacaaacagaa 894
>gb|AC079447.4| Homo sapiens BAC clone RP11-111H13 from 2, complete sequence Length = 175567 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 cacagaaagacaaaatcacc 227 |||||||||||||||||||| Sbjct: 108611 cacagaaagacaaaatcacc 108630
>emb|CR749772.5| Zebrafish DNA sequence from clone DKEY-260P18 in linkage group 19, complete sequence Length = 91686 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 tgttcatttttatcaatctcttta 147 ||||||||||||||||| |||||| Sbjct: 91182 tgttcatttttatcaatttcttta 91205
>emb|BX545847.9| Zebrafish DNA sequence from clone RP71-14M1 in linkage group 19, complete sequence Length = 128770 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 tgttcatttttatcaatctcttta 147 ||||||||||||||||| |||||| Sbjct: 127275 tgttcatttttatcaatttcttta 127252
>gb|AC175032.1| Mus musculus BAC clone RP24-222L21 from chromosome 14, complete sequence Length = 204872 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 aactcacattgcccaggctg 96 |||||||||||||||||||| Sbjct: 71591 aactcacattgcccaggctg 71610
>gb|AC174723.2| Mus musculus BAC clone RP23-93L3 from chromosome 14, complete sequence Length = 153644 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 aactcacattgcccaggctg 96 |||||||||||||||||||| Sbjct: 85070 aactcacattgcccaggctg 85089
>dbj|D14033.1|ROHVP7P Human rotavirus gene for VP7 protein, complete cds Length = 1062 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 ctactactccacaaacagaa 72 |||||||||||||||||||| Sbjct: 875 ctactactccacaaacagaa 894
>gb|AC174479.2| Mus musculus BAC clone RP23-100J17 from chromosome 14, complete sequence Length = 185390 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 aactcacattgcccaggctg 96 |||||||||||||||||||| Sbjct: 83975 aactcacattgcccaggctg 83956
>emb|CT025547.17| Mouse DNA sequence from clone RP24-111B7 on chromosome 14, complete sequence Length = 178908 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 gtgtcctctgggaacatgat 386 |||||||||||||||||||| Sbjct: 157784 gtgtcctctgggaacatgat 157765
>gb|AC165285.2| Mus musculus BAC clone RP24-235I1 from chromosome 14, complete sequence Length = 171474 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 aactcacattgcccaggctg 96 |||||||||||||||||||| Sbjct: 121199 aactcacattgcccaggctg 121218 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,886,948 Number of Sequences: 3902068 Number of extensions: 3886948 Number of successful extensions: 83733 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83636 Number of HSP's gapped (non-prelim): 97 length of query: 398 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 376 effective length of database: 17,147,199,772 effective search space: 6447347114272 effective search space used: 6447347114272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)