No.
Definition
Score (bits)
E Value
1 ref|NM_186260.2| Oryza sativa (japonica cultivar-group), mRNA
274
3e-70
2 dbj|AK064848.1| Oryza sativa (japonica cultivar-group) cDNA clon...
274
3e-70
3 dbj|AK060737.1| Oryza sativa (japonica cultivar-group) cDNA clon...
274
3e-70
4 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
176
5e-41
5 dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic D...
176
5e-41
6 dbj|AP003824.3| Oryza sativa (japonica cultivar-group) genomic D...
176
5e-41
7 ref|NM_186261.2| Oryza sativa (japonica cultivar-group), mRNA
161
3e-36
8 dbj|AK067910.1| Oryza sativa (japonica cultivar-group) cDNA clon...
161
3e-36
9 gb|AY106674.1| Zea mays PCO110619 mRNA sequence
113
6e-22
10 dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
46
0.13
11 gb|AC149544.1| Populus trichocarpa clone Pop1-69J1, complete seq...
42
2.0
12 ref|XM_850439.1| PREDICTED: Canis familiaris similar to Compleme...
42
2.0
13 gb|AC105042.7| Homo sapiens chromosome 18, clone CTD-2544E12, co...
42
2.0
14 gb|AC111085.11| Mus musculus chromosome 9, clone RP23-146C24, co...
40
7.7
15 dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c...
40
7.7
16 gb|AY129334.1| Mycobacteriophage Rosebush, complete genome
40
7.7
17 gb|AC010096.10| Homo sapiens BAC clone RP11-364A16 from 2, compl...
40
7.7
18 dbj|AP000415.1| Arabidopsis thaliana genomic DNA, chromosome 3, ...
40
7.7
19 gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete...
40
7.7
20 emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
40
7.7
>dbj|AP008213.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 176 bits (89), Expect = 5e-41
Identities = 161/185 (87%)
Strand = Plus / Minus
Query: 311 atgactcctcgatgggcatcttgattcccttgatttcgcgcgcgagggtccgcagctcct 370
||||||||||||||||||||||||| |||||||| ||||| || || | ||||| ||| |
Sbjct: 2228915 atgactcctcgatgggcatcttgatgcccttgatctcgcgtgccagagaccgcaactctt 2228856
Query: 371 cgacctcgtcggcggtgaggctccacccgagggcaccggcgaactccattgcctgcccgg 430
||||||||||| ||||||||||||| ||||| || |||||||||||| ||||| ||||
Sbjct: 2228855 cgacctcgtcgccggtgaggctccagccgagcgcgccggcgaactcctgcgcctggccgg 2228796
Query: 431 cgttcttggcccccgggatgggcaccacgttgccctggcaggtcagccagttcagagaca 490
|||||||||| || ||||| |||||||| ||||| ||||| |||||||||||||| || |
Sbjct: 2228795 cgttcttggctccggggattggcaccacattgccttggcatgtcagccagttcagtgaaa 2228736
Query: 491 cctga 495
|||||
Sbjct: 2228735 cctga 2228731
Score = 95.6 bits (48), Expect = 2e-16
Identities = 93/108 (86%)
Strand = Plus / Minus
Query: 388 aggctccacccgagggcaccggcgaactccattgcctgcccggcgttcttggcccccggg 447
|||||||||||||| ||||| ||||||||| | |||||| | |||||||| || || |||
Sbjct: 2233222 aggctccacccgagcgcaccagcgaactccctggcctgctctgcgttcttcgctccgggg 2233163
Query: 448 atgggcaccacgttgccctggcaggtcagccagttcagagacacctga 495
|| ||||| |||||||| |||||| |||||||||||||| |||||||
Sbjct: 2233162 atcggcacaacgttgccttggcagatcagccagttcagaaccacctga 2233115
Score = 87.7 bits (44), Expect = 4e-14
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 489 cacctgagttgggttcttgccatagcttactccaatctctttgattctgttcatgagtgg 548
|||||| ||||||||||| ||||||||| |||||||||| ||||| ||||||||||||||
Sbjct: 2228598 cacctgggttgggttcttcccatagctttctccaatctccttgatcctgttcatgagtgg 2228539
Query: 549 ttggagct 556
||| ||||
Sbjct: 2228538 ttgaagct 2228531
Score = 65.9 bits (33), Expect = 1e-07
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 488 acacctgagttgggttcttgccatagcttactccaatctctttgattctgttcatgagtg 547
|||||||||||||| |||| |||| ||| ||||||||||||| || ||||| || ||||
Sbjct: 2232841 acacctgagttggggtcttctcataacttcctccaatctctttaatcctgttaataagtg 2232782
Query: 548 gttggagct 556
|||||||||
Sbjct: 2232781 gttggagct 2232773
>dbj|AP004010.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1351_C05
Length = 112465
Score = 176 bits (89), Expect = 5e-41
Identities = 161/185 (87%)
Strand = Plus / Minus
Query: 311 atgactcctcgatgggcatcttgattcccttgatttcgcgcgcgagggtccgcagctcct 370
||||||||||||||||||||||||| |||||||| ||||| || || | ||||| ||| |
Sbjct: 96817 atgactcctcgatgggcatcttgatgcccttgatctcgcgtgccagagaccgcaactctt 96758
Query: 371 cgacctcgtcggcggtgaggctccacccgagggcaccggcgaactccattgcctgcccgg 430
||||||||||| ||||||||||||| ||||| || |||||||||||| ||||| ||||
Sbjct: 96757 cgacctcgtcgccggtgaggctccagccgagcgcgccggcgaactcctgcgcctggccgg 96698
Query: 431 cgttcttggcccccgggatgggcaccacgttgccctggcaggtcagccagttcagagaca 490
|||||||||| || ||||| |||||||| ||||| ||||| |||||||||||||| || |
Sbjct: 96697 cgttcttggctccggggattggcaccacattgccttggcatgtcagccagttcagtgaaa 96638
Query: 491 cctga 495
|||||
Sbjct: 96637 cctga 96633
Score = 95.6 bits (48), Expect = 2e-16
Identities = 93/108 (86%)
Strand = Plus / Minus
Query: 388 aggctccacccgagggcaccggcgaactccattgcctgcccggcgttcttggcccccggg 447
|||||||||||||| ||||| ||||||||| | |||||| | |||||||| || || |||
Sbjct: 101124 aggctccacccgagcgcaccagcgaactccctggcctgctctgcgttcttcgctccgggg 101065
Query: 448 atgggcaccacgttgccctggcaggtcagccagttcagagacacctga 495
|| ||||| |||||||| |||||| |||||||||||||| |||||||
Sbjct: 101064 atcggcacaacgttgccttggcagatcagccagttcagaaccacctga 101017
Score = 87.7 bits (44), Expect = 4e-14
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 489 cacctgagttgggttcttgccatagcttactccaatctctttgattctgttcatgagtgg 548
|||||| ||||||||||| ||||||||| |||||||||| ||||| ||||||||||||||
Sbjct: 96500 cacctgggttgggttcttcccatagctttctccaatctccttgatcctgttcatgagtgg 96441
Query: 549 ttggagct 556
||| ||||
Sbjct: 96440 ttgaagct 96433
Score = 65.9 bits (33), Expect = 1e-07
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 488 acacctgagttgggttcttgccatagcttactccaatctctttgattctgttcatgagtg 547
|||||||||||||| |||| |||| ||| ||||||||||||| || ||||| || ||||
Sbjct: 100743 acacctgagttggggtcttctcataacttcctccaatctctttaatcctgttaataagtg 100684
Query: 548 gttggagct 556
|||||||||
Sbjct: 100683 gttggagct 100675
>dbj|AP003824.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1343_B12
Length = 121362
Score = 176 bits (89), Expect = 5e-41
Identities = 161/185 (87%)
Strand = Plus / Minus
Query: 311 atgactcctcgatgggcatcttgattcccttgatttcgcgcgcgagggtccgcagctcct 370
||||||||||||||||||||||||| |||||||| ||||| || || | ||||| ||| |
Sbjct: 2614 atgactcctcgatgggcatcttgatgcccttgatctcgcgtgccagagaccgcaactctt 2555
Query: 371 cgacctcgtcggcggtgaggctccacccgagggcaccggcgaactccattgcctgcccgg 430
||||||||||| ||||||||||||| ||||| || |||||||||||| ||||| ||||
Sbjct: 2554 cgacctcgtcgccggtgaggctccagccgagcgcgccggcgaactcctgcgcctggccgg 2495
Query: 431 cgttcttggcccccgggatgggcaccacgttgccctggcaggtcagccagttcagagaca 490
|||||||||| || ||||| |||||||| ||||| ||||| |||||||||||||| || |
Sbjct: 2494 cgttcttggctccggggattggcaccacattgccttggcatgtcagccagttcagtgaaa 2435
Query: 491 cctga 495
|||||
Sbjct: 2434 cctga 2430
Score = 95.6 bits (48), Expect = 2e-16
Identities = 93/108 (86%)
Strand = Plus / Minus
Query: 388 aggctccacccgagggcaccggcgaactccattgcctgcccggcgttcttggcccccggg 447
|||||||||||||| ||||| ||||||||| | |||||| | |||||||| || || |||
Sbjct: 6921 aggctccacccgagcgcaccagcgaactccctggcctgctctgcgttcttcgctccgggg 6862
Query: 448 atgggcaccacgttgccctggcaggtcagccagttcagagacacctga 495
|| ||||| |||||||| |||||| |||||||||||||| |||||||
Sbjct: 6861 atcggcacaacgttgccttggcagatcagccagttcagaaccacctga 6814
Score = 87.7 bits (44), Expect = 4e-14
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 489 cacctgagttgggttcttgccatagcttactccaatctctttgattctgttcatgagtgg 548
|||||| ||||||||||| ||||||||| |||||||||| ||||| ||||||||||||||
Sbjct: 2297 cacctgggttgggttcttcccatagctttctccaatctccttgatcctgttcatgagtgg 2238
Query: 549 ttggagct 556
||| ||||
Sbjct: 2237 ttgaagct 2230
Score = 65.9 bits (33), Expect = 1e-07
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 488 acacctgagttgggttcttgccatagcttactccaatctctttgattctgttcatgagtg 547
|||||||||||||| |||| |||| ||| ||||||||||||| || ||||| || ||||
Sbjct: 6540 acacctgagttggggtcttctcataacttcctccaatctctttaatcctgttaataagtg 6481
Query: 548 gttggagct 556
|||||||||
Sbjct: 6480 gttggagct 6472
>emb|CR936257.1 | Natronomonas pharaonis DSM 2160 complete genome
Length = 2595221
Score = 40.1 bits (20), Expect = 7.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 362 gcagctcctcgacctcgtcg 381
||||||||||||||||||||
Sbjct: 392313 gcagctcctcgacctcgtcg 392294
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,141,305
Number of Sequences: 3902068
Number of extensions: 4141305
Number of successful extensions: 78990
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78717
Number of HSP's gapped (non-prelim): 273
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)