ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf97i10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O75157:T22D2_HUMAN TSC22 domain family protein 2 - Homo sapiens ... 33 2.9
2Q5QZP7:CCMA_IDILO Cytochrome c biogenesis ATP-binding export pro... 33 3.8
3Q2NKJ3:CQ068_HUMAN Uncharacterized protein C17orf68 - Homo sapie... 33 4.9
4Q7TV80:UVRB_PROMM UvrABC system protein B - Prochlorococcus mari... 32 8.4
5Q5RDX3:CQ068_PONPY Uncharacterized protein C17orf68 homolog - Po... 32 8.4

>O75157:T22D2_HUMAN TSC22 domain family protein 2 - Homo sapiens (Human)|
          Length = 780
 Score = 33.5 bits (75), Expect = 2.9
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +2

Query: 662 QPRQEPTGWS---STMPMPPFTPVPCSPQPHRFLTIPDQPQGS 781
           QP   P G +   S+ P+PPF      PQP      P QPQG+
Sbjct: 275 QPPPPPVGGAVAQSSAPLPPFPGAATGPQPMMAAAQPSQPQGA 317



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>Q5QZP7:CCMA_IDILO Cytochrome c biogenesis ATP-binding export protein ccmA -|
           Idiomarina loihiensis
          Length = 218

 Score = 33.1 bits (74), Expect = 3.8
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
 Frame = -2

Query: 371 VEVWKLLPFLGGLEALKDEAVRQI---RKTREALRRPVGSEAALEWIDGERGLLDVQGIA 201
           V+ W LL  LG L  L+DE   ++   ++ R AL R   ++A+L  +D     LDVQGIA
Sbjct: 117 VDAWDLLEKLG-LLGLEDELTTRLSAGQQRRVALTRLWATQASLWILDEPFTALDVQGIA 175

Query: 200 L 198
           L
Sbjct: 176 L 176



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>Q2NKJ3:CQ068_HUMAN Uncharacterized protein C17orf68 - Homo sapiens (Human)|
          Length = 1217

 Score = 32.7 bits (73), Expect = 4.9
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
 Frame = +3

Query: 669 VKNRRDGALPCPCRPSPRCHARLSPTASSPSLISLKAARQ---WCSPHTVAFLLCASSHK 839
           V+N  +  L  P     + + RL   +S P+L +LK   Q   W S    A L    +  
Sbjct: 521 VRNAHNEILEEPHHCPLQKYTRLQTPSSFPTLATLKEEGQRKAWASFDPKALLPLPEASY 580

Query: 840 MPSAC--SREPWSWLCAIQS---PAQ 902
           +PS     R  WSWLC + S   PAQ
Sbjct: 581 LPSCQLNRRLAWSWLCLLPSAFCPAQ 606



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>Q7TV80:UVRB_PROMM UvrABC system protein B - Prochlorococcus marinus (strain MIT 9313)|
          Length = 679

 Score = 32.0 bits (71), Expect = 8.4
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
 Frame = -3

Query: 673 LTGLLHGEESEQGGLEDHAFR-PAAAEERPVGYEEAPSPARH----GAAE*GCDLRHADQ 509
           L  + +G+++ +  L +H FR P+AA+ RP+  EE  S AR      A     +L+ +D 
Sbjct: 345 LKAMYNGDQARKKVLIEHGFRLPSAADNRPLKSEEFWSKARQTVFVSATPGDWELKQSDG 404

Query: 508 DLHDHVFR 485
            L + V R
Sbjct: 405 HLAEQVIR 412



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>Q5RDX3:CQ068_PONPY Uncharacterized protein C17orf68 homolog - Pongo pygmaeus|
           (Orangutan)
          Length = 1217

 Score = 32.0 bits (71), Expect = 8.4
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
 Frame = +3

Query: 669 VKNRRDGALPCPCRPSPRCHARLSPTASSPSLISLKAARQ---WCSPHTVAFLLCASSHK 839
           V+N  +  L  P     + + RL   +S P+L +LK   Q   W S    A L    +  
Sbjct: 521 VRNAHNEILEEPHHCPLQKYTRLQTPSSFPTLAALKEEGQREAWASFDPEALLPLPEASH 580

Query: 840 MPSACSRE--PWSWLCAIQS---PAQ 902
           +PS        WSWLC + S   PAQ
Sbjct: 581 LPSCQLNRHLAWSWLCLLPSAFHPAQ 606


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 307,425,886
Number of extensions: 7000152
Number of successful extensions: 20845
Number of sequences better than 10.0: 5
Number of HSP's gapped: 20764
Number of HSP's successfully gapped: 5
Length of query: 582
Length of database: 100,686,439
Length adjustment: 119
Effective length of query: 463
Effective length of database: 68,045,334
Effective search space: 31504989642
Effective search space used: 31504989642
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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