ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf97h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CT833493.1| Oryza sativa (indica cultivar-group) cDNA clone:... 94 1e-15
2ref|NM_001051746.1| Oryza sativa (japonica cultivar-group) Os01g... 94 1e-15
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 94 1e-15
4dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic D... 94 1e-15
5dbj|AK105883.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 1e-15
6dbj|AK067058.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 1e-15
7dbj|AK059108.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 1e-15
8dbj|AK237838.1| Sus scrofa mRNA, clone:SPL010105A04, expressed i... 44 1.2
9gb|BC118191.1| Bos taurus cDNA clone MGC:139402 IMAGE:8279486, c... 42 4.9
10gb|AC161429.2| Homo sapiens chromosome 20 clone WI2-3415J14, com... 42 4.9
11ref|XM_603210.2| PREDICTED: Bos taurus similar to catenin (cadhe... 42 4.9
12gb|AC115723.13| Mus musculus chromosome 5, clone RP23-17D18, com... 42 4.9
13ref|XM_581160.2| PREDICTED: Bos taurus similar to Alpha-2-macrog... 42 4.9
14gb|AC121564.4| Mus musculus BAC clone RP23-214I6 from 5, complet... 42 4.9
15emb|BX649588.5| Zebrafish DNA sequence from clone CH211-97M8 in ... 42 4.9
16gb|AC120381.13| Mus musculus chromosome 5, clone RP24-266G11, co... 42 4.9
17emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 4.9
18emb|AJ628149.4| Micromonospora echinospora genomic region of the... 42 4.9
19emb|AL590418.16| Mouse DNA sequence from clone RP23-206I14 on ch... 42 4.9 
>emb|CT833493.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA029H17, full
           insert sequence
          Length = 1161
 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 89/103 (86%)
 Strand = Plus / Plus

                                                                       
Query: 811 cgtcatcgaccatctgcggccacatcttctgccagaagtgcatcaaggccgccatccagg 870
           ||||||||||||||||||| ||||| || ||| || |||| ||||||||| | |||||||
Sbjct: 797 cgtcatcgaccatctgcggtcacattttttgcaagcagtgtatcaaggcctcaatccagg 856

                                                      
Query: 871 ctcagaacaagtgcccgacctgccgtaagacgcttaccatgaa 913
           ||||||| |||||||| |||||||| | || ||| ||||||||
Sbjct: 857 ctcagaagaagtgccctacctgccggaggaagctgaccatgaa 899
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>ref|NM_001051746.1| Oryza sativa (japonica cultivar-group) Os01g0919500 (Os01g0919500)
           mRNA, complete cds
          Length = 1147

 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 89/103 (86%)
 Strand = Plus / Plus

                                                                       
Query: 811 cgtcatcgaccatctgcggccacatcttctgccagaagtgcatcaaggccgccatccagg 870
           ||||||||||||||||||| ||||| || ||| || |||| ||||||||| | |||||||
Sbjct: 796 cgtcatcgaccatctgcggtcacattttttgcaagcagtgtatcaaggcctcaatccagg 855

                                                      
Query: 871 ctcagaacaagtgcccgacctgccgtaagacgcttaccatgaa 913
           ||||||| |||||||| |||||||| | || ||| ||||||||
Sbjct: 856 ctcagaagaagtgccctacctgccggaggaagctgaccatgaa 898
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 89/103 (86%)
 Strand = Plus / Plus

                                                                            
Query: 811      cgtcatcgaccatctgcggccacatcttctgccagaagtgcatcaaggccgccatccagg 870
                ||||||||||||||||||| ||||| || ||| || |||| ||||||||| | |||||||
Sbjct: 40113897 cgtcatcgaccatctgcggtcacattttttgcaagcagtgtatcaaggcctcaatccagg 40113956

                                                           
Query: 871      ctcagaacaagtgcccgacctgccgtaagacgcttaccatgaa 913
                ||||||| |||||||| |||||||| | || ||| ||||||||
Sbjct: 40113957 ctcagaagaagtgccctacctgccggaggaagctgaccatgaa 40113999
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>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0678F11
          Length = 154292

 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 89/103 (86%)
 Strand = Plus / Plus

                                                                         
Query: 811   cgtcatcgaccatctgcggccacatcttctgccagaagtgcatcaaggccgccatccagg 870
             ||||||||||||||||||| ||||| || ||| || |||| ||||||||| | |||||||
Sbjct: 56981 cgtcatcgaccatctgcggtcacattttttgcaagcagtgtatcaaggcctcaatccagg 57040

                                                        
Query: 871   ctcagaacaagtgcccgacctgccgtaagacgcttaccatgaa 913
             ||||||| |||||||| |||||||| | || ||| ||||||||
Sbjct: 57041 ctcagaagaagtgccctacctgccggaggaagctgaccatgaa 57083
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>dbj|AK105883.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-D05, full
           insert sequence
          Length = 1095

 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 89/103 (86%)
 Strand = Plus / Plus

                                                                       
Query: 811 cgtcatcgaccatctgcggccacatcttctgccagaagtgcatcaaggccgccatccagg 870
           ||||||||||||||||||| ||||| || ||| || |||| ||||||||| | |||||||
Sbjct: 796 cgtcatcgaccatctgcggtcacattttttgcaagcagtgtatcaaggcctcaatccagg 855

                                                      
Query: 871 ctcagaacaagtgcccgacctgccgtaagacgcttaccatgaa 913
           ||||||| |||||||| |||||||| | || ||| ||||||||
Sbjct: 856 ctcagaagaagtgccctacctgccggaggaagctgaccatgaa 898
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>dbj|AK067058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091M15, full
           insert sequence
          Length = 1243

 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 89/103 (86%)
 Strand = Plus / Plus

                                                                       
Query: 811 cgtcatcgaccatctgcggccacatcttctgccagaagtgcatcaaggccgccatccagg 870
           ||||||||||||||||||| ||||| || ||| || |||| ||||||||| | |||||||
Sbjct: 879 cgtcatcgaccatctgcggtcacattttttgcaagcagtgtatcaaggcctcaatccagg 938

                                                      
Query: 871 ctcagaacaagtgcccgacctgccgtaagacgcttaccatgaa 913
           ||||||| |||||||| |||||||| | || ||| ||||||||
Sbjct: 939 ctcagaagaagtgccctacctgccggaggaagctgaccatgaa 981
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>dbj|AK059108.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D10, full
           insert sequence
          Length = 1147

 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 89/103 (86%)
 Strand = Plus / Plus

                                                                       
Query: 811 cgtcatcgaccatctgcggccacatcttctgccagaagtgcatcaaggccgccatccagg 870
           ||||||||||||||||||| ||||| || ||| || |||| ||||||||| | |||||||
Sbjct: 796 cgtcatcgaccatctgcggtcacattttttgcaagcagtgtatcaaggcctcaatccagg 855

                                                      
Query: 871 ctcagaacaagtgcccgacctgccgtaagacgcttaccatgaa 913
           ||||||| |||||||| |||||||| | || ||| ||||||||
Sbjct: 856 ctcagaagaagtgccctacctgccggaggaagctgaccatgaa 898
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>dbj|AK237838.1| Sus scrofa mRNA, clone:SPL010105A04, expressed in spleen
          Length = 2591

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 829  gccacatcttctgccagaagtgcatc 854
            |||||||||||||| |||||||||||
Sbjct: 1782 gccacatcttctgcaagaagtgcatc 1807
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>gb|BC118191.1| Bos taurus cDNA clone MGC:139402 IMAGE:8279486, complete cds
          Length = 1531

 Score = 42.1 bits (21), Expect = 4.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 255 ggcggcggcggctgccggacc 275
           |||||||||||||||||||||
Sbjct: 60  ggcggcggcggctgccggacc 40
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>gb|AC161429.2| Homo sapiens chromosome 20 clone WI2-3415J14, complete sequence
          Length = 41419

 Score = 42.1 bits (21), Expect = 4.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 773   gttcagctgcccagtctgctg 793
             |||||||||||||||||||||
Sbjct: 23364 gttcagctgcccagtctgctg 23384
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>ref|XM_603210.2| PREDICTED: Bos taurus similar to catenin (cadherin-associated
           protein), delta 2 (neural plakophilin-related arm-repeat
           protein) (LOC524873), partial mRNA
          Length = 1063

 Score = 42.1 bits (21), Expect = 4.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 255 ggcggcggcggctgccggacc 275
           |||||||||||||||||||||
Sbjct: 50  ggcggcggcggctgccggacc 70
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>gb|AC115723.13| Mus musculus chromosome 5, clone RP23-17D18, complete sequence
          Length = 206470

 Score = 42.1 bits (21), Expect = 4.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 1215  tctatggatacaaatatcaacattt 1239
             ||||||||||||||||| |||||||
Sbjct: 11132 tctatggatacaaatataaacattt 11108
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>ref|XM_581160.2| PREDICTED: Bos taurus similar to Alpha-2-macroglobulin
           receptor-associated protein precursor (Alpha-2-MRAP)
           (Low density lipoprotein receptor-related
           protein-associated protein 1) (RAP) (LOC504957), mRNA
          Length = 273

 Score = 42.1 bits (21), Expect = 4.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 255 ggcggcggcggctgccggacc 275
           |||||||||||||||||||||
Sbjct: 56  ggcggcggcggctgccggacc 36
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>gb|AC121564.4| Mus musculus BAC clone RP23-214I6 from 5, complete sequence
          Length = 190110

 Score = 42.1 bits (21), Expect = 4.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 1243   ataccaaataaaatatcaccagttctact 1271
              |||||||| |||| |||||||||||||||
Sbjct: 155548 ataccaaagaaaagatcaccagttctact 155520
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>emb|BX649588.5| Zebrafish DNA sequence from clone CH211-97M8 in linkage group 20,
             complete sequence
          Length = 75268

 Score = 42.1 bits (21), Expect = 4.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 539   tttgttgtctggtgcaaacat 559
             |||||||||||||||||||||
Sbjct: 14403 tttgttgtctggtgcaaacat 14423
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>gb|AC120381.13| Mus musculus chromosome 5, clone RP24-266G11, complete sequence
          Length = 166871

 Score = 42.1 bits (21), Expect = 4.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 1215   tctatggatacaaatatcaacattt 1239
              ||||||||||||||||| |||||||
Sbjct: 138910 tctatggatacaaatataaacattt 138886
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 4.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 111     gcgacgggataccgccgcggc 131
               |||||||||||||||||||||
Sbjct: 2100428 gcgacgggataccgccgcggc 2100408
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>emb|AJ628149.4| Micromonospora echinospora genomic region of the gentamicin
            biosynthesis gene cluster, strain DSM 43036
          Length = 84222

 Score = 42.1 bits (21), Expect = 4.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 145  ggatgtggtggaccgtgccgcaggg 169
            ||||||||||| |||||||||||||
Sbjct: 3895 ggatgtggtgggccgtgccgcaggg 3919
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>emb|AL590418.16| Mouse DNA sequence from clone RP23-206I14 on chromosome 2, complete
             sequence
          Length = 175045

 Score = 42.1 bits (21), Expect = 4.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 828   ggccacatcttctgccagaag 848
             |||||||||||||||||||||
Sbjct: 25578 ggccacatcttctgccagaag 25598


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 209,910,029
Number of extensions: 11201950
Number of successful extensions: 209432
Number of sequences better than 10.0: 19
Number of HSP's gapped: 209432
Number of HSP's successfully gapped: 19
Length of query: 1290
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1267
Effective length of database: 18,503,978,556
Effective search space: 23444540830452
Effective search space used: 23444540830452
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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