ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf99m06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_511157.2| PREDICTED: Pan troglodytes similar to BDG-29 (L... 46 0.20
2emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 46 0.20
3gb|AC092720.4| Homo sapiens chromosome 16 clone RP11-482M8, comp... 46 0.20
4emb|CR555306.1| Azoarcus sp. EbN1 complete genome 46 0.20
5gb|CP000460.1| Burkholderia cenocepacia HI2424 chromosome 3, com... 44 0.78
6gb|CP000378.1| Burkholderia cenocepacia AU 1054 chromosome 1, co... 44 0.78
7gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 44 0.78
8gb|CP000431.1| Rhodococcus sp. RHA1, complete genome 42 3.1
9gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome 42 3.1
10emb|CT025731.18| Mouse DNA sequence from clone RP24-85N6 on chro... 42 3.1
11gb|AY658213.1| Synthetic construct Peudomonas aeruginosa clone F... 42 3.1
12gb|AC162923.2| Mus musculus BAC clone RP23-304O17 from chromosom... 42 3.1
13dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 3.1
14emb|CR848405.2| Xenopus tropicalis finished cDNA, clone TNeu072l04 42 3.1
15gb|AC162305.5| Mus musculus BAC clone RP23-470G3 from chromosome... 42 3.1
16gb|AC145550.3| Mus musculus BAC clone RP23-50A18 from 16, comple... 42 3.1

>ref|XM_511157.2| PREDICTED: Pan troglodytes similar to BDG-29 (LOC454299), mRNA
          Length = 7449
 Score = 46.1 bits (23), Expect = 0.20
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 294 cggccggcgcctcctccgccgtc 316
           |||||||||||||||||||||||
Sbjct: 428 cggccggcgcctcctccgccgtc 450



to top

>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 46.1 bits (23), Expect = 0.20
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 68      ggtcctgggcttcctcggctcgg 90
               |||||||||||||||||||||||
Sbjct: 5745129 ggtcctgggcttcctcggctcgg 5745107



to top

>gb|AC092720.4| Homo sapiens chromosome 16 clone RP11-482M8, complete sequence
          Length = 169214

 Score = 46.1 bits (23), Expect = 0.20
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 294   cggccggcgcctcctccgccgtc 316
             |||||||||||||||||||||||
Sbjct: 23390 cggccggcgcctcctccgccgtc 23368



to top

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 46.1 bits (23), Expect = 0.20
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 508     tcatcgccgtcgtgctcgggatcgcgt 534
               ||||||||||||||||||| |||||||
Sbjct: 2086669 tcatcgccgtcgtgctcggcatcgcgt 2086695



to top

>gb|CP000460.1| Burkholderia cenocepacia HI2424 chromosome 3, complete genome
          Length = 1055417

 Score = 44.1 bits (22), Expect = 0.78
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 553    cggccgcgccgtcgcacacgccgcccgacg 582
              ||||||||| ||||| ||||||||||||||
Sbjct: 467207 cggccgcgcggtcgcgcacgccgcccgacg 467236



to top

>gb|CP000378.1| Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence
          Length = 3294563

 Score = 44.1 bits (22), Expect = 0.78
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 553     cggccgcgccgtcgcacacgccgcccgacg 582
               ||||||||| ||||| ||||||||||||||
Sbjct: 1716792 cggccgcgcggtcgcgcacgccgcccgacg 1716763



to top

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.78
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 287     gcggcgccggccggcgcctcct 308
               ||||||||||||||||||||||
Sbjct: 3523211 gcggcgccggccggcgcctcct 3523190



to top

>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome
          Length = 7804765

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 380    ggcgatgttcatcgtcggcgtgacggaga 408
              |||| ||||| ||||||||||||||||||
Sbjct: 483653 ggcgctgttcttcgtcggcgtgacggaga 483625



to top

>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome
          Length = 6264404

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 317     caagcggcgcaggctcggcat 337
               |||||||||||||||||||||
Sbjct: 4681912 caagcggcgcaggctcggcat 4681892



to top

>emb|CT025731.18| Mouse DNA sequence from clone RP24-85N6 on chromosome 17, complete
              sequence
          Length = 226653

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 335    catcatcctctccatcttctc 355
              |||||||||||||||||||||
Sbjct: 221447 catcatcctctccatcttctc 221467



to top

>gb|AY658213.1| Synthetic construct Peudomonas aeruginosa clone FLH044482.01F
           PA4185 gene, partial cds
          Length = 729

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 317 caagcggcgcaggctcggcat 337
           |||||||||||||||||||||
Sbjct: 492 caagcggcgcaggctcggcat 472



to top

>gb|AC162923.2| Mus musculus BAC clone RP23-304O17 from chromosome 17, complete sequence
          Length = 192669

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 335    catcatcctctccatcttctc 355
              |||||||||||||||||||||
Sbjct: 124256 catcatcctctccatcttctc 124276



to top

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 318     aagcggcgcaggctcggcatc 338
               |||||||||||||||||||||
Sbjct: 4578454 aagcggcgcaggctcggcatc 4578474



to top

>emb|CR848405.2| Xenopus tropicalis finished cDNA, clone TNeu072l04
          Length = 2076

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 334 gcatcatcctctccatcttct 354
           |||||||||||||||||||||
Sbjct: 963 gcatcatcctctccatcttct 943



to top

>gb|AC162305.5| Mus musculus BAC clone RP23-470G3 from chromosome 16, complete sequence
          Length = 208504

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 69     gtcctgggcttcctcggctcg 89
              |||||||||||||||||||||
Sbjct: 152336 gtcctgggcttcctcggctcg 152356



to top

>gb|AC145550.3| Mus musculus BAC clone RP23-50A18 from 16, complete sequence
          Length = 146370

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 69     gtcctgggcttcctcggctcg 89
              |||||||||||||||||||||
Sbjct: 107626 gtcctgggcttcctcggctcg 107606


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 111,714,034
Number of extensions: 6970713
Number of successful extensions: 154080
Number of sequences better than 10.0: 16
Number of HSP's gapped: 154080
Number of HSP's successfully gapped: 16
Length of query: 821
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 799
Effective length of database: 18,508,616,841
Effective search space: 14788384855959
Effective search space used: 14788384855959
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top