ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf97g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os01g67000:12001.t06058:unspliced-genomic membrane-assoc... 38 0.028
2LOC_Os08g07730:12008.t00662:unspliced-genomic transferase fa... 34 0.68
3LOC_Os01g38140:12001.t03352:unspliced-genomic retrotransposo... 34 0.68
4LOC_Os02g37800:12002.t03418:unspliced-genomic lecithine chol... 32 1.8
5LOC_Os06g41710:12006.t03863:unspliced-genomic MORC family CW... 32 2.4
6LOC_Os11g30700:12011.t02672:unspliced-genomic retrotransposo... 26 3.1
7LOC_Os03g61100:12003.t05343:unspliced-genomic GDP-mannose tr... 30 6.2
8LOC_Os12g24960:12012.t02219:unspliced-genomic retrotransposo... 24 7.9
9LOC_Os12g01290:12012.t004192:unspliced-genomic ulp1 protease... 30 8.6
10LOC_Os11g40540:12011.t03595:unspliced-genomic sugar transpor... 30 8.6
11LOC_Os11g05820:12011.t00473:unspliced-genomic transposon pro... 30 8.6
12LOC_Os07g30200:12007.t02710:unspliced-genomic asparaginyl-tR... 30 8.6
13LOC_Os04g01610:12004.t00059:unspliced-genomic expressed protein 30 8.6
14LOC_Os03g15930:12003.t01379:unspliced-genomic cysteine-type ... 30 8.6
15LOC_Os02g42590:12002.t03844:unspliced-genomic signal transdu... 30 8.6
16LOC_Os01g60780:12001.t05459:unspliced-genomic integral membr... 30 8.6
17LOC_Os01g04910:12001.t00378:unspliced-genomic PRPK, putative... 30 8.6

>LOC_Os01g67000:12001.t06058:unspliced-genomic membrane-associated 30 kDa protein, chloroplast precursor, putative,|
            expressed
          Length = 4501
 Score = 38.2 bits (77), Expect = 0.028
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +3 / +1

                                
Query: 6    DIERELNELREKANDY*ILQ 65
            +IE ELNELR+KAN+Y*I+Q
Sbjct: 4159 EIENELNELRKKANEY*IMQ 4218



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>LOC_Os08g07730:12008.t00662:unspliced-genomic transferase family protein, expressed|
          Length = 3882

 Score = 33.6 bits (67), Expect = 0.68
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2 / -2

                                              
Query: 128  SLQICPMRV*TFNACFLLW*RYEGIHVRKILCIF 229
            SL + P     +N C LL+* Y G+   KILC+F
Sbjct: 1448 SLHLTPAVNSKWNGC*LLF*SYRGVSYGKILCLF 1347



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>LOC_Os01g38140:12001.t03352:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 10891

 Score = 33.6 bits (67), Expect = 0.68
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3 / +3

                                               
Query: 258  LPQCKSLIFIELSREHKLFTVVYLVPFGWCHNMYE 362
            LPQ ++ +FIE S ++KLF +     F +C++ +E
Sbjct: 5652 LPQSQTTLFIEFSDDYKLFFIGTCKSFLFCNSCFE 5756



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>LOC_Os02g37800:12002.t03418:unspliced-genomic lecithine cholesterol acyltransferase-like protein, putative,|
            expressed
          Length = 2862

 Score = 32.2 bits (64), Expect = 1.8
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -3 / -2

                                                     
Query: 246  TMSFTGKMQRIFLTWMPSYLHHKRKHALKVQTRIGQICRLY 124
            ++S+    + + L+W+P++L  KR+HA +V   +    R +
Sbjct: 2594 SISYLDGFESLLLSWLPTHLRVKRQHADQVDLAVSVTIRCH 2472



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>LOC_Os06g41710:12006.t03863:unspliced-genomic MORC family CW-type zinc finger 3, putative, expressed|
          Length = 11267

 Score = 31.8 bits (63), Expect = 2.4
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -3 / -1

                                                              
Query: 279  LEIYTEVMVNCTMSFTGKMQRIFLTWMPSYLHHKRKHALKVQTRIGQICR 130
            LEIY +V   C  +++     I L    S++  +R+H ++VQ +   + R
Sbjct: 8549 LEIYNKVCDICNSNYSTSHVSIMLLTSNSFVRLRREHKIEVQNKGAHVTR 8400



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>LOC_Os11g30700:12011.t02672:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 4810

 Score = 25.8 bits (50), Expect(2) = 3.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3 / -2

                                  
Query: 93   LVQPGTRACLVKSNNRWPSPAA 28
            +  PGTRA   +  +RW +P +
Sbjct: 3171 MTAPGTRALRARVGHRWEAPTS 3106



 Score = 22.6 bits (43), Expect(2) = 3.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1 / -3

                     
Query: 224  CRESSSHGC 198
            CRESS H C
Sbjct: 3230 CRESSCHAC 3204



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>LOC_Os03g61100:12003.t05343:unspliced-genomic GDP-mannose transporter, putative|
          Length = 2643

 Score = 30.4 bits (60), Expect = 6.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1 / -2

                                             
Query: 248 VQCHSQEKCRESSSHGCLHTFTTKENMH*RFKRA 147
           VQ H +  C+  SSH   H+  T  ++    KRA
Sbjct: 107 VQRHGRRTCKRESSHSLTHSSLTMSDLRSNSKRA 6



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>LOC_Os12g24960:12012.t02219:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 2503

 Score = 24.0 bits (46), Expect(2) = 7.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3 / +2

                             
Query: 57  SNNRWPSPAAHLTPSRYP 4
           +N+ WP    + TP+R P
Sbjct: 317 TNSSWPETGRYWTPTRRP 370



 Score = 23.1 bits (44), Expect(2) = 7.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2 / +1

                         
Query: 100 RRSRPARYTGMPCK 59
           R  RPAR+ G+P K
Sbjct: 199 RMERPARHGGVPAK 240



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>LOC_Os12g01290:12012.t004192:unspliced-genomic ulp1 protease family, C-terminal catalytic domain containing protein,|
            expressed
          Length = 4305

 Score = 29.9 bits (59), Expect = 8.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3 / +2

                                      
Query: 246  TMSFTGKMQRIFLTWMPSYLHHKRKH 169
            ++S     + ++ TWM +Y  HKR+H
Sbjct: 1991 SISVVSSPRSLYYTWMHAYYTHKRRH 2068



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>LOC_Os11g40540:12011.t03595:unspliced-genomic sugar transporter, putative, expressed|
          Length = 6721

 Score = 29.9 bits (59), Expect = 8.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1 / -1

                                                
Query: 67   ACPCTGLDEISSVREPQKSV*PADLSNARLNLQCMF 174
            ACP T +  I  +    +++ PADLS+ + +LQ  F
Sbjct: 4570 ACPPTAVSVIMFIPSAIRAISPADLSDVKTHLQ*KF 4463



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>LOC_Os11g05820:12011.t00473:unspliced-genomic transposon protein, putative, Mutator sub-class, expressed|
          Length = 2954

 Score = 29.9 bits (59), Expect = 8.6
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1 / -2

                                     
Query: 31   CGRRPTIIRFYKACPCTGLDEISSV 105
            CG  P ++ F+++C CT +D I+++
Sbjct: 1666 CGADPFLMGFHRSCICTMVDLITNI 1592



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>LOC_Os07g30200:12007.t02710:unspliced-genomic asparaginyl-tRNA synthetase, putative, expressed|
          Length = 6458

 Score = 29.9 bits (59), Expect = 8.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3 / -1

                                                  
Query: 258  MVNCTMSFTGKMQRIFLTWMPSYLHHKRKHALKVQTRI 145
            M+ C  +    MQ IF++W+   + HK ++   VQ RI
Sbjct: 5177 MLTCHPTPKTDMQSIFVSWLGL*IEHKEQNCNVVQMRI 5064



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>LOC_Os04g01610:12004.t00059:unspliced-genomic expressed protein|
          Length = 1998

 Score = 29.9 bits (59), Expect = 8.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3 / -1

                                  
Query: 81  RAGRDLLSQRTPEKRIACRFVQC 149
           R  R LLSQR P +R  CR + C
Sbjct: 891 RGVRLLLSQRRPHRRRGCRLLSC 823



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>LOC_Os03g15930:12003.t01379:unspliced-genomic cysteine-type peptidase, putative, expressed|
          Length = 4992

 Score = 29.9 bits (59), Expect = 8.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1 / -1

                                                   
Query: 248  VQCHSQEKCRESSSHGCLHTFTTKENMH*RFKRALDKSA 132
            V  H QE+C+ SS +G L     KE  H    +  D SA
Sbjct: 4371 VLLHKQERCKSSS*NGGL*RLAMKEKQHKIVCKETDNSA 4255



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>LOC_Os02g42590:12002.t03844:unspliced-genomic signal transducer, putative, expressed|
          Length = 5855

 Score = 29.9 bits (59), Expect = 8.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2 / -1

                            
Query: 349  WHQPNGTRYTTVNNLC 302
            WHQ +G R T++N+LC
Sbjct: 2561 WHQ*SGRRQTSINSLC 2514



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>LOC_Os01g60780:12001.t05459:unspliced-genomic integral membrane protein like, putative, expressed|
          Length = 4380

 Score = 29.9 bits (59), Expect = 8.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1 / -3

                                             
Query: 233  QEKCRESSSHGCLHTFTTKENMH*RFKRALDKS 135
            Q+ C+E +   C   F  K     RFKR +D++
Sbjct: 1237 QDLCKEQTDQICARNFKRKVGERGRFKRVIDRT 1139



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>LOC_Os01g04910:12001.t00378:unspliced-genomic PRPK, putative, expressed|
          Length = 2594

 Score = 29.9 bits (59), Expect = 8.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1 / -3

                                 
Query: 212  SSHGCLHTFTTKENMH*RFKR 150
            S HGCL++FT K+N  *+  R
Sbjct: 1551 SHHGCLNSFTQKDNNS*KMHR 1489


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 162,906,805
Number of extensions: 2435577
Number of successful extensions: 9365
Number of sequences better than 10.0: 17
Length of query: 130
Length of database: 55,613,886
Length adjustment: 47
Effective length of query: 83
Effective length of database: 52,968,820
Effective search space: 4396412060
Effective search space used: 4396412060
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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