Clone Name | FLbaf97g07 |
---|---|
Clone Library Name | barley_pub |
>LOC_Os01g67000:12001.t06058:unspliced-genomic membrane-associated 30 kDa protein, chloroplast precursor, putative,| expressed Length = 4501 Score = 38.2 bits (77), Expect = 0.028 Identities = 15/20 (75%), Positives = 19/20 (95%) Frame = +3 / +1 Query: 6 DIERELNELREKANDY*ILQ 65 +IE ELNELR+KAN+Y*I+Q Sbjct: 4159 EIENELNELRKKANEY*IMQ 4218
>LOC_Os08g07730:12008.t00662:unspliced-genomic transferase family protein, expressed| Length = 3882 Score = 33.6 bits (67), Expect = 0.68 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 / -2 Query: 128 SLQICPMRV*TFNACFLLW*RYEGIHVRKILCIF 229 SL + P +N C LL+* Y G+ KILC+F Sbjct: 1448 SLHLTPAVNSKWNGC*LLF*SYRGVSYGKILCLF 1347
>LOC_Os01g38140:12001.t03352:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 10891 Score = 33.6 bits (67), Expect = 0.68 Identities = 13/35 (37%), Positives = 23/35 (65%) Frame = +3 / +3 Query: 258 LPQCKSLIFIELSREHKLFTVVYLVPFGWCHNMYE 362 LPQ ++ +FIE S ++KLF + F +C++ +E Sbjct: 5652 LPQSQTTLFIEFSDDYKLFFIGTCKSFLFCNSCFE 5756
>LOC_Os02g37800:12002.t03418:unspliced-genomic lecithine cholesterol acyltransferase-like protein, putative,| expressed Length = 2862 Score = 32.2 bits (64), Expect = 1.8 Identities = 11/41 (26%), Positives = 24/41 (58%) Frame = -3 / -2 Query: 246 TMSFTGKMQRIFLTWMPSYLHHKRKHALKVQTRIGQICRLY 124 ++S+ + + L+W+P++L KR+HA +V + R + Sbjct: 2594 SISYLDGFESLLLSWLPTHLRVKRQHADQVDLAVSVTIRCH 2472
>LOC_Os06g41710:12006.t03863:unspliced-genomic MORC family CW-type zinc finger 3, putative, expressed| Length = 11267 Score = 31.8 bits (63), Expect = 2.4 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = -3 / -1 Query: 279 LEIYTEVMVNCTMSFTGKMQRIFLTWMPSYLHHKRKHALKVQTRIGQICR 130 LEIY +V C +++ I L S++ +R+H ++VQ + + R Sbjct: 8549 LEIYNKVCDICNSNYSTSHVSIMLLTSNSFVRLRREHKIEVQNKGAHVTR 8400
>LOC_Os11g30700:12011.t02672:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4810 Score = 25.8 bits (50), Expect(2) = 3.1 Identities = 8/22 (36%), Positives = 13/22 (59%) Frame = -3 / -2 Query: 93 LVQPGTRACLVKSNNRWPSPAA 28 + PGTRA + +RW +P + Sbjct: 3171 MTAPGTRALRARVGHRWEAPTS 3106 Score = 22.6 bits (43), Expect(2) = 3.1 Identities = 7/9 (77%), Positives = 7/9 (77%) Frame = -1 / -3 Query: 224 CRESSSHGC 198 CRESS H C Sbjct: 3230 CRESSCHAC 3204
>LOC_Os03g61100:12003.t05343:unspliced-genomic GDP-mannose transporter, putative| Length = 2643 Score = 30.4 bits (60), Expect = 6.2 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = -1 / -2 Query: 248 VQCHSQEKCRESSSHGCLHTFTTKENMH*RFKRA 147 VQ H + C+ SSH H+ T ++ KRA Sbjct: 107 VQRHGRRTCKRESSHSLTHSSLTMSDLRSNSKRA 6
>LOC_Os12g24960:12012.t02219:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 2503 Score = 24.0 bits (46), Expect(2) = 7.9 Identities = 7/18 (38%), Positives = 11/18 (61%) Frame = -3 / +2 Query: 57 SNNRWPSPAAHLTPSRYP 4 +N+ WP + TP+R P Sbjct: 317 TNSSWPETGRYWTPTRRP 370 Score = 23.1 bits (44), Expect(2) = 7.9 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = -2 / +1 Query: 100 RRSRPARYTGMPCK 59 R RPAR+ G+P K Sbjct: 199 RMERPARHGGVPAK 240
>LOC_Os12g01290:12012.t004192:unspliced-genomic ulp1 protease family, C-terminal catalytic domain containing protein,| expressed Length = 4305 Score = 29.9 bits (59), Expect = 8.6 Identities = 9/26 (34%), Positives = 16/26 (61%) Frame = -3 / +2 Query: 246 TMSFTGKMQRIFLTWMPSYLHHKRKH 169 ++S + ++ TWM +Y HKR+H Sbjct: 1991 SISVVSSPRSLYYTWMHAYYTHKRRH 2068
>LOC_Os11g40540:12011.t03595:unspliced-genomic sugar transporter, putative, expressed| Length = 6721 Score = 29.9 bits (59), Expect = 8.6 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +1 / -1 Query: 67 ACPCTGLDEISSVREPQKSV*PADLSNARLNLQCMF 174 ACP T + I + +++ PADLS+ + +LQ F Sbjct: 4570 ACPPTAVSVIMFIPSAIRAISPADLSDVKTHLQ*KF 4463
>LOC_Os11g05820:12011.t00473:unspliced-genomic transposon protein, putative, Mutator sub-class, expressed| Length = 2954 Score = 29.9 bits (59), Expect = 8.6 Identities = 9/25 (36%), Positives = 18/25 (72%) Frame = +1 / -2 Query: 31 CGRRPTIIRFYKACPCTGLDEISSV 105 CG P ++ F+++C CT +D I+++ Sbjct: 1666 CGADPFLMGFHRSCICTMVDLITNI 1592
>LOC_Os07g30200:12007.t02710:unspliced-genomic asparaginyl-tRNA synthetase, putative, expressed| Length = 6458 Score = 29.9 bits (59), Expect = 8.6 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -3 / -1 Query: 258 MVNCTMSFTGKMQRIFLTWMPSYLHHKRKHALKVQTRI 145 M+ C + MQ IF++W+ + HK ++ VQ RI Sbjct: 5177 MLTCHPTPKTDMQSIFVSWLGL*IEHKEQNCNVVQMRI 5064
>LOC_Os04g01610:12004.t00059:unspliced-genomic expressed protein| Length = 1998 Score = 29.9 bits (59), Expect = 8.6 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +3 / -1 Query: 81 RAGRDLLSQRTPEKRIACRFVQC 149 R R LLSQR P +R CR + C Sbjct: 891 RGVRLLLSQRRPHRRRGCRLLSC 823
>LOC_Os03g15930:12003.t01379:unspliced-genomic cysteine-type peptidase, putative, expressed| Length = 4992 Score = 29.9 bits (59), Expect = 8.6 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -1 / -1 Query: 248 VQCHSQEKCRESSSHGCLHTFTTKENMH*RFKRALDKSA 132 V H QE+C+ SS +G L KE H + D SA Sbjct: 4371 VLLHKQERCKSSS*NGGL*RLAMKEKQHKIVCKETDNSA 4255
>LOC_Os02g42590:12002.t03844:unspliced-genomic signal transducer, putative, expressed| Length = 5855 Score = 29.9 bits (59), Expect = 8.6 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = -2 / -1 Query: 349 WHQPNGTRYTTVNNLC 302 WHQ +G R T++N+LC Sbjct: 2561 WHQ*SGRRQTSINSLC 2514
>LOC_Os01g60780:12001.t05459:unspliced-genomic integral membrane protein like, putative, expressed| Length = 4380 Score = 29.9 bits (59), Expect = 8.6 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = -1 / -3 Query: 233 QEKCRESSSHGCLHTFTTKENMH*RFKRALDKS 135 Q+ C+E + C F K RFKR +D++ Sbjct: 1237 QDLCKEQTDQICARNFKRKVGERGRFKRVIDRT 1139
>LOC_Os01g04910:12001.t00378:unspliced-genomic PRPK, putative, expressed| Length = 2594 Score = 29.9 bits (59), Expect = 8.6 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -1 / -3 Query: 212 SSHGCLHTFTTKENMH*RFKR 150 S HGCL++FT K+N *+ R Sbjct: 1551 SHHGCLNSFTQKDNNS*KMHR 1489 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 162,906,805 Number of extensions: 2435577 Number of successful extensions: 9365 Number of sequences better than 10.0: 17 Length of query: 130 Length of database: 55,613,886 Length adjustment: 47 Effective length of query: 83 Effective length of database: 52,968,820 Effective search space: 4396412060 Effective search space used: 4396412060 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)