ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf97g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q8S0J7:IM30_ORYSJ Probable membrane-associated 30 kDa protein, c... 30 3.3
2O80796:IM30_ARATH Probable membrane-associated 30 kDa protein, c... 29 4.4
3P93339:GBB_NICPL Guanine nucleotide-binding protein subunit beta... 28 7.4
4Q00968:EGF_PIG Pro-epidermal growth factor precursor - Sus scrof... 28 7.4
5Q09797:YAA3_SCHPO Uncharacterized protein C22G7.03 - Schizosacch... 28 9.7

>Q8S0J7:IM30_ORYSJ Probable membrane-associated 30 kDa protein, chloroplast precursor|
           - Oryza sativa subsp. japonica (Rice)
          Length = 317
 Score = 29.6 bits (65), Expect = 3.3
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +3

Query: 6   DIERELNELREKANDY 53
           +IE ELNELR+KAN+Y
Sbjct: 302 EIENELNELRKKANEY 317



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>O80796:IM30_ARATH Probable membrane-associated 30 kDa protein, chloroplast precursor|
           - Arabidopsis thaliana (Mouse-ear cress)
          Length = 330

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +3

Query: 6   DIERELNELREKANDY 53
           +IE ELNELR KAND+
Sbjct: 315 EIENELNELRRKANDF 330



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>P93339:GBB_NICPL Guanine nucleotide-binding protein subunit beta - Nicotiana|
           plumbaginifolia (Leadwort-leaved tobacco)
          Length = 377

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 96  LLSQRTPEKRIACRFVQ-CAFEPSMHVFFCG 185
           L SQ+T   ++ C +V  CAF PS H   CG
Sbjct: 95  LTSQKTHAIKLPCAWVMTCAFSPSGHSVACG 125



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>Q00968:EGF_PIG Pro-epidermal growth factor precursor - Sus scrofa (Pig)|
          Length = 1214

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +3

Query: 132 CRFVQCAFEPSMHVFFCGEGMKASM*GR 215
           CR   C  EP  HV  C EG   S  GR
Sbjct: 325 CRGSMCGQEPKSHVCTCAEGYTLSQDGR 352



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>Q09797:YAA3_SCHPO Uncharacterized protein C22G7.03 - Schizosaccharomyces pombe|
           (Fission yeast)
          Length = 236

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -3

Query: 279 LEIYTEVMVNCTMSFTGKMQRIFLTWMPSYLHHKRKHALKVQTRI 145
           + I  ++ +N     T  ++ I+ TW+P++   KRK   K + R+
Sbjct: 164 IPIIEDISINEDTQRTVSLETIYATWIPTFWESKRKSHEKDEGRL 208


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 67,780,383
Number of extensions: 1416851
Number of successful extensions: 2833
Number of sequences better than 10.0: 5
Number of HSP's gapped: 2833
Number of HSP's successfully gapped: 5
Length of query: 130
Length of database: 100,686,439
Length adjustment: 96
Effective length of query: 34
Effective length of database: 74,354,119
Effective search space: 2528040046
Effective search space used: 2528040046
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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