ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf97g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001051608.1| Oryza sativa (japonica cultivar-group) Os01g... 52 0.001
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
3dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
4dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
5dbj|AK067698.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
6dbj|AK058611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
7dbj|AB082959.1| Rhodobacter blasticus plasmid pMG160 DNA, comple... 46 0.092
8dbj|AB082961.1| Cloning vector pMG171 DNA, complete genome 46 0.092
9dbj|AB082960.1| Cloning vector pMG170 DNA, complete genome 46 0.092
10dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
11dbj|AK099166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.36
12emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb... 44 0.36
13gb|AC140251.2| Mus musculus BAC clone RP24-289C19 from chromosom... 42 1.4
14ref|XM_815497.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 1.4
15ref|XM_806172.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 1.4
16gb|AC190204.3| Pan troglodytes BAC clone CH251-637M16 from chrom... 40 5.7
17gb|AC192571.2| Pan troglodytes BAC clone CH251-574E9 from chromo... 40 5.7
18gb|AC191395.3| Pan troglodytes BAC clone CH251-350B2 from chromo... 40 5.7
19gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 40 5.7
20gb|AC112866.5| Rattus norvegicus 1 BAC CH230-375M13 (Children's ... 40 5.7
21gb|AC151408.1| Pan troglodytes chromosome X clone PTB-007P20 map... 40 5.7
22gb|AC093359.6| Mus musculus chromosome 7, clone RP23-57A19, comp... 40 5.7
23gb|AC098731.3| Mus musculus BAC clone RP23-3L10 from 9, complete... 40 5.7
24gb|AC073090.8| Homo sapiens BAC clone RP11-328J2 from 7, complet... 40 5.7
25dbj|AK148674.1| Mus musculus 2 days neonate sympathetic ganglion... 40 5.7
26gb|AF279873.4| Homo sapiens chromosome 8 clone RP1-25D10, RP1-27... 40 5.7
27gb|AC091525.17| Homo sapiens 12 BAC RP11-490N22 (Roswell Park Ca... 40 5.7
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
29emb|AL669818.11| Human DNA sequence from clone RP11-164H5 on chr... 40 5.7
30emb|AL445604.9| Human DNA sequence from clone RP11-661D17 on chr... 40 5.7
31emb|AL356005.9| Human DNA sequence from clone RP11-54B9 on chrom... 40 5.7
32emb|AL136318.13| Human DNA sequence from clone RP1-254P11 on chr... 40 5.7
33gb|AC025157.18| Homo sapiens 12 BAC RP11-401I10 (Roswell Park Ca... 40 5.7
34dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.7
35emb|AL357172.3|CNS05TDW Human chromosome 14 DNA sequence BAC R-7... 40 5.7
36dbj|AP001341.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 5.7
37emb|AL359682.4|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2... 40 5.7

>ref|NM_001051608.1| Oryza sativa (japonica cultivar-group) Os01g0895100 (Os01g0895100)
            mRNA, complete cds
          Length = 1357
 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 22   taaatgagctgcgggagaaggccaacgattattagatt 59
            |||||||||||||| |||||||||| || |||||||||
Sbjct: 1052 taaatgagctgcggaagaaggccaatgaatattagatt 1089



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 22       taaatgagctgcgggagaaggccaacgattattagatt 59
                |||||||||||||| |||||||||| || |||||||||
Sbjct: 38904577 taaatgagctgcggaagaaggccaatgaatattagatt 38904540



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>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1078G07
          Length = 199457

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 22     taaatgagctgcgggagaaggccaacgattattagatt 59
              |||||||||||||| |||||||||| || |||||||||
Sbjct: 177459 taaatgagctgcggaagaaggccaatgaatattagatt 177422



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>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0696G06
          Length = 142571

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 22    taaatgagctgcgggagaaggccaacgattattagatt 59
             |||||||||||||| |||||||||| || |||||||||
Sbjct: 69363 taaatgagctgcggaagaaggccaatgaatattagatt 69326



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>dbj|AK067698.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116L10, full
            insert sequence
          Length = 1309

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 22   taaatgagctgcgggagaaggccaacgattattagatt 59
            |||||||||||||| |||||||||| || |||||||||
Sbjct: 984  taaatgagctgcggaagaaggccaatgaatattagatt 1021



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>dbj|AK058611.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-A10, full
            insert sequence
          Length = 1357

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 22   taaatgagctgcgggagaaggccaacgattattagatt 59
            |||||||||||||| |||||||||| || |||||||||
Sbjct: 1052 taaatgagctgcggaagaaggccaatgaatattagatt 1089



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>dbj|AB082959.1| Rhodobacter blasticus plasmid pMG160 DNA, complete sequence
          Length = 3431

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 27   gagctgcgggagaaggccaacga 49
            |||||||||||||||||||||||
Sbjct: 1214 gagctgcgggagaaggccaacga 1236



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>dbj|AB082961.1| Cloning vector pMG171 DNA, complete genome
          Length = 6068

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 27   gagctgcgggagaaggccaacga 49
            |||||||||||||||||||||||
Sbjct: 2250 gagctgcgggagaaggccaacga 2228



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>dbj|AB082960.1| Cloning vector pMG170 DNA, complete genome
          Length = 6068

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 27   gagctgcgggagaaggccaacga 49
            |||||||||||||||||||||||
Sbjct: 2250 gagctgcgggagaaggccaacga 2228



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 349      ataacatgtatgaaaaaattga 370
                ||||||||||||||||||||||
Sbjct: 17843913 ataacatgtatgaaaaaattga 17843892



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>dbj|AK099166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081J06, full
            insert sequence
          Length = 1306

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 22   taaatgagctgcgggagaaggccaacgattattagatt 59
            ||||||||||||||  ||||||||| || |||||||||
Sbjct: 981  taaatgagctgcggaggaaggccaatgaatattagatt 1018



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>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 142246

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 349   ataacatgtatgaaaaaattga 370
             ||||||||||||||||||||||
Sbjct: 63111 ataacatgtatgaaaaaattga 63090



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>gb|AC140251.2| Mus musculus BAC clone RP24-289C19 from chromosome 12, complete
             sequence
          Length = 177652

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 223   catttttcctgtgaatgacat 243
             |||||||||||||||||||||
Sbjct: 81871 catttttcctgtgaatgacat 81851



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>ref|XM_815497.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506855.330) partial mRNA
          Length = 1473

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 16  gggagttaaatgagctgcggg 36
           |||||||||||||||||||||
Sbjct: 956 gggagttaaatgagctgcggg 976



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>ref|XM_806172.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053511131.60) partial mRNA
          Length = 1593

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 16   gggagttaaatgagctgcggg 36
            |||||||||||||||||||||
Sbjct: 1076 gggagttaaatgagctgcggg 1096



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>gb|AC190204.3| Pan troglodytes BAC clone CH251-637M16 from chromosome 7, complete
              sequence
          Length = 221122

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    agattctctgcatttttcct 232
              ||||||||||||||||||||
Sbjct: 139333 agattctctgcatttttcct 139314



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>gb|AC192571.2| Pan troglodytes BAC clone CH251-574E9 from chromosome 7, complete
            sequence
          Length = 206973

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  agattctctgcatttttcct 232
            ||||||||||||||||||||
Sbjct: 7414 agattctctgcatttttcct 7433



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>gb|AC191395.3| Pan troglodytes BAC clone CH251-350B2 from chromosome 7, complete
             sequence
          Length = 165593

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 206   gtgaggaagattctctgcattttt 229
             |||||| |||||||||||||||||
Sbjct: 19100 gtgaggcagattctctgcattttt 19123



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>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
              map S2606, complete sequence
          Length = 124140

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 348    cataacatgtatgaaaaaattgac 371
              |||||||||| |||||||||||||
Sbjct: 100219 cataacatgtttgaaaaaattgac 100196



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>gb|AC112866.5| Rattus norvegicus 1 BAC CH230-375M13 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 147079

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   taccatttggttggtgccat 350
             ||||||||||||||||||||
Sbjct: 80523 taccatttggttggtgccat 80504



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>gb|AC151408.1| Pan troglodytes chromosome X clone PTB-007P20 map human ortholog q23,
             complete sequence
          Length = 68318

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   ataacatgtatgaaaaaatt 368
             ||||||||||||||||||||
Sbjct: 15065 ataacatgtatgaaaaaatt 15046



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>gb|AC093359.6| Mus musculus chromosome 7, clone RP23-57A19, complete sequence
          Length = 239361

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 331    taccatttggttggtgccat 350
              ||||||||||||||||||||
Sbjct: 154431 taccatttggttggtgccat 154412



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>gb|AC098731.3| Mus musculus BAC clone RP23-3L10 from 9, complete sequence
          Length = 220184

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    tgagctgcgggagaaggcca 45
             ||||||||||||||||||||
Sbjct: 77242 tgagctgcgggagaaggcca 77223



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>gb|AC073090.8| Homo sapiens BAC clone RP11-328J2 from 7, complete sequence
          Length = 116557

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  agattctctgcatttttcct 232
            ||||||||||||||||||||
Sbjct: 6572 agattctctgcatttttcct 6591



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>dbj|AK148674.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
           full-length enriched library, clone:7120433E19
           product:unclassifiable, full insert sequence
          Length = 2691

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  tgagctgcgggagaaggcca 45
           ||||||||||||||||||||
Sbjct: 240 tgagctgcgggagaaggcca 221



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>gb|AF279873.4| Homo sapiens chromosome 8 clone RP1-25D10, RP1-273G13, RP1-103E7 map
             8p21-p11, complete sequence
          Length = 301232

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   agattctctgcatttttcct 232
             ||||||||||||||||||||
Sbjct: 33074 agattctctgcatttttcct 33093



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>gb|AC091525.17| Homo sapiens 12 BAC RP11-490N22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 129740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    accttcaatgcatgttttct 177
              ||||||||||||||||||||
Sbjct: 113684 accttcaatgcatgttttct 113703



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 348      cataacatgtatgaaaaaattgac 371
                |||||||||| |||||||||||||
Sbjct: 27947413 cataacatgtttgaaaaaattgac 27947390



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>emb|AL669818.11| Human DNA sequence from clone RP11-164H5 on chromosome 9 Contains a RAN
             binding protein 1 (RANBP1) pseudogene and a CpG island,
             complete sequence
          Length = 68709

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   ataacatgtatgaaaaaatt 368
             ||||||||||||||||||||
Sbjct: 59382 ataacatgtatgaaaaaatt 59363



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>emb|AL445604.9| Human DNA sequence from clone RP11-661D17 on chromosome 13 Contains a CpG
              island, complete sequence
          Length = 174615

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    agattctctgcatttttcct 232
              ||||||||||||||||||||
Sbjct: 119683 agattctctgcatttttcct 119702



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>emb|AL356005.9| Human DNA sequence from clone RP11-54B9 on chromosome 1 Contains a
             pseudogene similar to flavin-containing monooxygenase
             proteins, a ribosomal protein L4 (RPL4) pseudogene and the
             5' end of a pseudogene similar to flavin-containing
             monooxygenase proteins, complete sequence
          Length = 118425

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   accttcaatgcatgttttct 177
             ||||||||||||||||||||
Sbjct: 76561 accttcaatgcatgttttct 76580



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>emb|AL136318.13| Human DNA sequence from clone RP1-254P11 on chromosome 10 Contains a
            transcription elongation factor B (SIII) polypeptide 1
            (15kDa, elongin C) (TCEB1) pseudogene, complete sequence
          Length = 55284

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  agattctctgcatttttcct 232
            ||||||||||||||||||||
Sbjct: 8739 agattctctgcatttttcct 8758



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>gb|AC025157.18| Homo sapiens 12 BAC RP11-401I10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 143417

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    accttcaatgcatgttttct 177
              ||||||||||||||||||||
Sbjct: 127369 accttcaatgcatgttttct 127388



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>dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, section 37/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  agattctctgcatttttcct 232
            ||||||||||||||||||||
Sbjct: 8662 agattctctgcatttttcct 8681



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>emb|AL357172.3|CNS05TDW Human chromosome 14 DNA sequence BAC R-789A21 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 198714

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 206    gtgaggaagattctctgcattttt 229
              |||||| |||||||||||||||||
Sbjct: 180503 gtgaggcagattctctgcattttt 180480



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>dbj|AP001341.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B266G18,
             LL56-APP region, complete sequence
          Length = 122318

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   agattctctgcatttttcct 232
             ||||||||||||||||||||
Sbjct: 67405 agattctctgcatttttcct 67424



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>emb|AL359682.4|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2561F5 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 116067

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   agattctctgcatttttcct 232
             ||||||||||||||||||||
Sbjct: 24288 agattctctgcatttttcct 24269


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 72,540,639
Number of extensions: 3848730
Number of successful extensions: 286296
Number of sequences better than 10.0: 37
Number of HSP's gapped: 286296
Number of HSP's successfully gapped: 37
Length of query: 392
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 370
Effective length of database: 18,508,616,841
Effective search space: 6848188231170
Effective search space used: 6848188231170
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)
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