Clone Name | FLbaf97g07 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_001051608.1| Oryza sativa (japonica cultivar-group) Os01g0895100 (Os01g0895100) mRNA, complete cds Length = 1357 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 22 taaatgagctgcgggagaaggccaacgattattagatt 59 |||||||||||||| |||||||||| || ||||||||| Sbjct: 1052 taaatgagctgcggaagaaggccaatgaatattagatt 1089
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 22 taaatgagctgcgggagaaggccaacgattattagatt 59 |||||||||||||| |||||||||| || ||||||||| Sbjct: 38904577 taaatgagctgcggaagaaggccaatgaatattagatt 38904540
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1078G07 Length = 199457 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 22 taaatgagctgcgggagaaggccaacgattattagatt 59 |||||||||||||| |||||||||| || ||||||||| Sbjct: 177459 taaatgagctgcggaagaaggccaatgaatattagatt 177422
>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696G06 Length = 142571 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 22 taaatgagctgcgggagaaggccaacgattattagatt 59 |||||||||||||| |||||||||| || ||||||||| Sbjct: 69363 taaatgagctgcggaagaaggccaatgaatattagatt 69326
>dbj|AK067698.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116L10, full insert sequence Length = 1309 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 22 taaatgagctgcgggagaaggccaacgattattagatt 59 |||||||||||||| |||||||||| || ||||||||| Sbjct: 984 taaatgagctgcggaagaaggccaatgaatattagatt 1021
>dbj|AK058611.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-A10, full insert sequence Length = 1357 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 22 taaatgagctgcgggagaaggccaacgattattagatt 59 |||||||||||||| |||||||||| || ||||||||| Sbjct: 1052 taaatgagctgcggaagaaggccaatgaatattagatt 1089
>dbj|AB082959.1| Rhodobacter blasticus plasmid pMG160 DNA, complete sequence Length = 3431 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 27 gagctgcgggagaaggccaacga 49 ||||||||||||||||||||||| Sbjct: 1214 gagctgcgggagaaggccaacga 1236
>dbj|AB082961.1| Cloning vector pMG171 DNA, complete genome Length = 6068 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 27 gagctgcgggagaaggccaacga 49 ||||||||||||||||||||||| Sbjct: 2250 gagctgcgggagaaggccaacga 2228
>dbj|AB082960.1| Cloning vector pMG170 DNA, complete genome Length = 6068 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 27 gagctgcgggagaaggccaacga 49 ||||||||||||||||||||||| Sbjct: 2250 gagctgcgggagaaggccaacga 2228
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 349 ataacatgtatgaaaaaattga 370 |||||||||||||||||||||| Sbjct: 17843913 ataacatgtatgaaaaaattga 17843892
>dbj|AK099166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081J06, full insert sequence Length = 1306 Score = 44.1 bits (22), Expect = 0.36 Identities = 34/38 (89%) Strand = Plus / Plus Query: 22 taaatgagctgcgggagaaggccaacgattattagatt 59 |||||||||||||| ||||||||| || ||||||||| Sbjct: 981 taaatgagctgcggaggaaggccaatgaatattagatt 1018
>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142246 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 349 ataacatgtatgaaaaaattga 370 |||||||||||||||||||||| Sbjct: 63111 ataacatgtatgaaaaaattga 63090
>gb|AC140251.2| Mus musculus BAC clone RP24-289C19 from chromosome 12, complete sequence Length = 177652 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 catttttcctgtgaatgacat 243 ||||||||||||||||||||| Sbjct: 81871 catttttcctgtgaatgacat 81851
>ref|XM_815497.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506855.330) partial mRNA Length = 1473 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 gggagttaaatgagctgcggg 36 ||||||||||||||||||||| Sbjct: 956 gggagttaaatgagctgcggg 976
>ref|XM_806172.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511131.60) partial mRNA Length = 1593 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 gggagttaaatgagctgcggg 36 ||||||||||||||||||||| Sbjct: 1076 gggagttaaatgagctgcggg 1096
>gb|AC190204.3| Pan troglodytes BAC clone CH251-637M16 from chromosome 7, complete sequence Length = 221122 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 agattctctgcatttttcct 232 |||||||||||||||||||| Sbjct: 139333 agattctctgcatttttcct 139314
>gb|AC192571.2| Pan troglodytes BAC clone CH251-574E9 from chromosome 7, complete sequence Length = 206973 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 agattctctgcatttttcct 232 |||||||||||||||||||| Sbjct: 7414 agattctctgcatttttcct 7433
>gb|AC191395.3| Pan troglodytes BAC clone CH251-350B2 from chromosome 7, complete sequence Length = 165593 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 206 gtgaggaagattctctgcattttt 229 |||||| ||||||||||||||||| Sbjct: 19100 gtgaggcagattctctgcattttt 19123
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 348 cataacatgtatgaaaaaattgac 371 |||||||||| ||||||||||||| Sbjct: 100219 cataacatgtttgaaaaaattgac 100196
>gb|AC112866.5| Rattus norvegicus 1 BAC CH230-375M13 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 147079 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 taccatttggttggtgccat 350 |||||||||||||||||||| Sbjct: 80523 taccatttggttggtgccat 80504
>gb|AC151408.1| Pan troglodytes chromosome X clone PTB-007P20 map human ortholog q23, complete sequence Length = 68318 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ataacatgtatgaaaaaatt 368 |||||||||||||||||||| Sbjct: 15065 ataacatgtatgaaaaaatt 15046
>gb|AC093359.6| Mus musculus chromosome 7, clone RP23-57A19, complete sequence Length = 239361 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 taccatttggttggtgccat 350 |||||||||||||||||||| Sbjct: 154431 taccatttggttggtgccat 154412
>gb|AC098731.3| Mus musculus BAC clone RP23-3L10 from 9, complete sequence Length = 220184 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tgagctgcgggagaaggcca 45 |||||||||||||||||||| Sbjct: 77242 tgagctgcgggagaaggcca 77223
>gb|AC073090.8| Homo sapiens BAC clone RP11-328J2 from 7, complete sequence Length = 116557 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 agattctctgcatttttcct 232 |||||||||||||||||||| Sbjct: 6572 agattctctgcatttttcct 6591
>dbj|AK148674.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120433E19 product:unclassifiable, full insert sequence Length = 2691 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tgagctgcgggagaaggcca 45 |||||||||||||||||||| Sbjct: 240 tgagctgcgggagaaggcca 221
>gb|AF279873.4| Homo sapiens chromosome 8 clone RP1-25D10, RP1-273G13, RP1-103E7 map 8p21-p11, complete sequence Length = 301232 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 agattctctgcatttttcct 232 |||||||||||||||||||| Sbjct: 33074 agattctctgcatttttcct 33093
>gb|AC091525.17| Homo sapiens 12 BAC RP11-490N22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 129740 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 accttcaatgcatgttttct 177 |||||||||||||||||||| Sbjct: 113684 accttcaatgcatgttttct 113703
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 348 cataacatgtatgaaaaaattgac 371 |||||||||| ||||||||||||| Sbjct: 27947413 cataacatgtttgaaaaaattgac 27947390
>emb|AL669818.11| Human DNA sequence from clone RP11-164H5 on chromosome 9 Contains a RAN binding protein 1 (RANBP1) pseudogene and a CpG island, complete sequence Length = 68709 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ataacatgtatgaaaaaatt 368 |||||||||||||||||||| Sbjct: 59382 ataacatgtatgaaaaaatt 59363
>emb|AL445604.9| Human DNA sequence from clone RP11-661D17 on chromosome 13 Contains a CpG island, complete sequence Length = 174615 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 agattctctgcatttttcct 232 |||||||||||||||||||| Sbjct: 119683 agattctctgcatttttcct 119702
>emb|AL356005.9| Human DNA sequence from clone RP11-54B9 on chromosome 1 Contains a pseudogene similar to flavin-containing monooxygenase proteins, a ribosomal protein L4 (RPL4) pseudogene and the 5' end of a pseudogene similar to flavin-containing monooxygenase proteins, complete sequence Length = 118425 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 accttcaatgcatgttttct 177 |||||||||||||||||||| Sbjct: 76561 accttcaatgcatgttttct 76580
>emb|AL136318.13| Human DNA sequence from clone RP1-254P11 on chromosome 10 Contains a transcription elongation factor B (SIII) polypeptide 1 (15kDa, elongin C) (TCEB1) pseudogene, complete sequence Length = 55284 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 agattctctgcatttttcct 232 |||||||||||||||||||| Sbjct: 8739 agattctctgcatttttcct 8758
>gb|AC025157.18| Homo sapiens 12 BAC RP11-401I10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 143417 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 accttcaatgcatgttttct 177 |||||||||||||||||||| Sbjct: 127369 accttcaatgcatgttttct 127388
>dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, section 37/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 agattctctgcatttttcct 232 |||||||||||||||||||| Sbjct: 8662 agattctctgcatttttcct 8681
>emb|AL357172.3|CNS05TDW Human chromosome 14 DNA sequence BAC R-789A21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 198714 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 206 gtgaggaagattctctgcattttt 229 |||||| ||||||||||||||||| Sbjct: 180503 gtgaggcagattctctgcattttt 180480
>dbj|AP001341.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B266G18, LL56-APP region, complete sequence Length = 122318 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 agattctctgcatttttcct 232 |||||||||||||||||||| Sbjct: 67405 agattctctgcatttttcct 67424
>emb|AL359682.4|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2561F5 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 116067 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 agattctctgcatttttcct 232 |||||||||||||||||||| Sbjct: 24288 agattctctgcatttttcct 24269 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 72,540,639 Number of extensions: 3848730 Number of successful extensions: 286296 Number of sequences better than 10.0: 37 Number of HSP's gapped: 286296 Number of HSP's successfully gapped: 37 Length of query: 392 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 370 Effective length of database: 18,508,616,841 Effective search space: 6848188231170 Effective search space used: 6848188231170 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 13 (26.3 bits)