ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf99j07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_001071644.1| Oryza sativa (japonica cultivar-group) Os10g... 88 2e-14
2gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosom... 88 2e-14
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
4gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 gen... 88 2e-14
5dbj|AK069238.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
6ref|NM_001055313.1| Oryza sativa (japonica cultivar-group) Os03g... 54 3e-04
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
8gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome... 54 3e-04
9dbj|AK069220.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
10gb|AY108210.1| Zea mays PCO096605 mRNA sequence 48 0.016
11gb|AY112233.1| Zea mays CL11800_1 mRNA sequence 42 1.0
12gb|AC007952.16| Homo sapiens chromosome 17, clone RP11-160E2, co... 40 4.0
13ref|XR_007552.1| PREDICTED: Rattus norvegicus similar to zinc fi... 40 4.0
14ref|XR_006576.1| PREDICTED: Rattus norvegicus similar to zinc fi... 40 4.0
15gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 4.0
16gb|AY729806.1| Cellulomonas flavigena endoglucanase CBP105 gene,... 40 4.0
17gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 4.0
18gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 4.0
19gb|AC139077.2| Homo sapiens chromosome 17, clone XXfos-88899C12,... 40 4.0
20gb|AC139138.2| Homo sapiens chromosome 17, clone XXfos-82524G9, ... 40 4.0 
>ref|NM_001071644.1| Oryza sativa (japonica cultivar-group) Os10g0524600 (Os10g0524600)
            mRNA, complete cds
          Length = 2541
 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 77/88 (87%)
 Strand = Plus / Plus

                                                                        
Query: 1    gtcgcgggcgccgagggcaacctgaagtgggtctccgatgaccacatcgtgcggagcccc 60
            ||||| ||||||||||||||||||||||||||||| || || ||||||||| ||||||||
Sbjct: 2211 gtcgccggcgccgagggcaacctgaagtgggtctcggacgaacacatcgtgaggagcccc 2270

                                        
Query: 61   attgtggttccagccaaggccgcgtagt 88
            ||  |  | ||||||| |||||||||||
Sbjct: 2271 atcatcatcccagccacggccgcgtagt 2298
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>gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0096G08
              map E1363S, complete sequence
          Length = 140681

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 77/88 (87%)
 Strand = Plus / Minus

                                                                          
Query: 1      gtcgcgggcgccgagggcaacctgaagtgggtctccgatgaccacatcgtgcggagcccc 60
              ||||| ||||||||||||||||||||||||||||| || || ||||||||| ||||||||
Sbjct: 131839 gtcgccggcgccgagggcaacctgaagtgggtctcggacgaacacatcgtgaggagcccc 131780

                                          
Query: 61     attgtggttccagccaaggccgcgtagt 88
              ||  |  | ||||||| |||||||||||
Sbjct: 131779 atcatcatcccagccacggccgcgtagt 131752
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10
          Length = 22685906

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 77/88 (87%)
 Strand = Plus / Minus

                                                                            
Query: 1        gtcgcgggcgccgagggcaacctgaagtgggtctccgatgaccacatcgtgcggagcccc 60
                ||||| ||||||||||||||||||||||||||||| || || ||||||||| ||||||||
Sbjct: 19870801 gtcgccggcgccgagggcaacctgaagtgggtctcggacgaacacatcgtgaggagcccc 19870742

                                            
Query: 61       attgtggttccagccaaggccgcgtagt 88
                ||  |  | ||||||| |||||||||||
Sbjct: 19870741 atcatcatcccagccacggccgcgtagt 19870714
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>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete
              sequence
          Length = 116932

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 77/88 (87%)
 Strand = Plus / Plus

                                                                          
Query: 1      gtcgcgggcgccgagggcaacctgaagtgggtctccgatgaccacatcgtgcggagcccc 60
              ||||| ||||||||||||||||||||||||||||| || || ||||||||| ||||||||
Sbjct: 115242 gtcgccggcgccgagggcaacctgaagtgggtctcggacgaacacatcgtgaggagcccc 115301

                                          
Query: 61     attgtggttccagccaaggccgcgtagt 88
              ||  |  | ||||||| |||||||||||
Sbjct: 115302 atcatcatcccagccacggccgcgtagt 115329
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>dbj|AK069238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012B10, full
            insert sequence
          Length = 2542

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 77/88 (87%)
 Strand = Plus / Plus

                                                                        
Query: 1    gtcgcgggcgccgagggcaacctgaagtgggtctccgatgaccacatcgtgcggagcccc 60
            ||||| ||||||||||||||||||||||||||||| || || ||||||||| ||||||||
Sbjct: 2212 gtcgccggcgccgagggcaacctgaagtgggtctcggacgaacacatcgtgaggagcccc 2271

                                        
Query: 61   attgtggttccagccaaggccgcgtagt 88
            ||  |  | ||||||| |||||||||||
Sbjct: 2272 atcatcatcccagccacggccgcgtagt 2299
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>ref|NM_001055313.1| Oryza sativa (japonica cultivar-group) Os03g0119300 (Os03g0119300)
            mRNA, complete cds
          Length = 2604

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1    gtcgcgggcgccgagggcaacctgaagtgggtctccgatgaccacatcgtgcggagccc 59
            ||||| |||| |||||| ||||| |||||||||||||| || ||| ||||| |||||||
Sbjct: 2281 gtcgccggcgtcgaggggaacctcaagtgggtctccgacgagcacgtcgtgaggagccc 2339
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                          
Query: 1       gtcgcgggcgccgagggcaacctgaagtgggtctccgatgaccacatcgtgcggagccc 59
               ||||| |||| |||||| ||||| |||||||||||||| || ||| ||||| |||||||
Sbjct: 1014074 gtcgccggcgtcgaggggaacctcaagtgggtctccgacgagcacgtcgtgaggagccc 1014016
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>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11,
             complete sequence
          Length = 126827

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1     gtcgcgggcgccgagggcaacctgaagtgggtctccgatgaccacatcgtgcggagccc 59
             ||||| |||| |||||| ||||| |||||||||||||| || ||| ||||| |||||||
Sbjct: 34291 gtcgccggcgtcgaggggaacctcaagtgggtctccgacgagcacgtcgtgaggagccc 34233
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>dbj|AK069220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012L19, full
            insert sequence
          Length = 2605

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1    gtcgcgggcgccgagggcaacctgaagtgggtctccgatgaccacatcgtgcggagccc 59
            ||||| |||| |||||| ||||| |||||||||||||| || ||| ||||| |||||||
Sbjct: 2282 gtcgccggcgtcgaggggaacctcaagtgggtctccgacgagcacgtcgtgaggagccc 2340
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>gb|AY108210.1| Zea mays PCO096605 mRNA sequence
          Length = 1795

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 1    gtcgcgggcgccgagggcaacctgaagtgggt 32
            ||||| ||||||||||| ||||||||||||||
Sbjct: 1353 gtcgccggcgccgaggggaacctgaagtgggt 1384
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>gb|AY112233.1| Zea mays CL11800_1 mRNA sequence
          Length = 811

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 48  cgtgcggagccccattgtggt 68
           |||||||||||||||||||||
Sbjct: 472 cgtgcggagccccattgtggt 452
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>gb|AC007952.16| Homo sapiens chromosome 17, clone RP11-160E2, complete sequence
          Length = 154011

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   agcaattttgttctgtaaat 233
             ||||||||||||||||||||
Sbjct: 79527 agcaattttgttctgtaaat 79546
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>ref|XR_007552.1| PREDICTED: Rattus norvegicus similar to zinc finger, BED domain
           containing 4 (LOC365071), mRNA
          Length = 1984

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 42  ccacatcgtgcggagccccattgt 65
           |||||||||| |||||||||||||
Sbjct: 772 ccacatcgtgaggagccccattgt 795
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>ref|XR_006576.1| PREDICTED: Rattus norvegicus similar to zinc finger, BED domain
           containing 4 (LOC365071), mRNA
          Length = 1984

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 42  ccacatcgtgcggagccccattgt 65
           |||||||||| |||||||||||||
Sbjct: 772 ccacatcgtgaggagccccattgt 795
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 12      cgagggcaacctgaagtggg 31
               ||||||||||||||||||||
Sbjct: 4130389 cgagggcaacctgaagtggg 4130370
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>gb|AY729806.1| Cellulomonas flavigena endoglucanase CBP105 gene, partial cds
          Length = 2220

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  agggcaacctgaagtgggtc 33
           ||||||||||||||||||||
Sbjct: 281 agggcaacctgaagtgggtc 300
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    ggctgctgcgcttccatggt 182
              ||||||||||||||||||||
Sbjct: 274066 ggctgctgcgcttccatggt 274047
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 12      cgagggcaacctgaagtggg 31
               ||||||||||||||||||||
Sbjct: 3783393 cgagggcaacctgaagtggg 3783374
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>gb|AC139077.2| Homo sapiens chromosome 17, clone XXfos-88899C12, complete sequence
          Length = 37411

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   agcaattttgttctgtaaat 233
             ||||||||||||||||||||
Sbjct: 18295 agcaattttgttctgtaaat 18276
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>gb|AC139138.2| Homo sapiens chromosome 17, clone XXfos-82524G9, complete sequence
          Length = 41839

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 214  agcaattttgttctgtaaat 233
            ||||||||||||||||||||
Sbjct: 5362 agcaattttgttctgtaaat 5343


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 36,039,844
Number of extensions: 1763470
Number of successful extensions: 126056
Number of sequences better than 10.0: 20
Number of HSP's gapped: 126051
Number of HSP's successfully gapped: 20
Length of query: 281
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 259
Effective length of database: 18,508,616,841
Effective search space: 4793731761819
Effective search space used: 4793731761819
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)
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