ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf97c20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9CPU2:NDUB2_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcom... 32 3.0
2O60182:RFC1_SCHPO Replication factor C subunit 1 - Schizosacchar... 31 3.9

>Q9CPU2:NDUB2_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2,|
           mitochondrial precursor - Mus musculus (Mouse)
          Length = 105
 Score = 31.6 bits (70), Expect = 3.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 136 PHNKRWHTVAGKGLCAVMWFWIFYRAKQDGAVLLG 240
           P   R   + G+ L ++MWFWI +R   D   +LG
Sbjct: 48  PQLTRSQVIQGEFLSSLMWFWILWRFWHDSDAVLG 82



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>O60182:RFC1_SCHPO Replication factor C subunit 1 - Schizosaccharomyces pombe (Fission|
           yeast)
          Length = 934

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 362 IVLHVSTRVSANKSTTICHFIPVLFES--VNLFSTQTDFVAGLL 487
           I +H+  +VSANK     H+IP+L+ES  V L +  +D V  ++
Sbjct: 753 IQVHMRLKVSANKLDLRQHYIPILYESLPVKLSTGHSDVVPEII 796


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 94,460,218
Number of extensions: 1615512
Number of successful extensions: 3323
Number of sequences better than 10.0: 2
Number of HSP's gapped: 3323
Number of HSP's successfully gapped: 2
Length of query: 229
Length of database: 100,686,439
Length adjustment: 109
Effective length of query: 120
Effective length of database: 70,788,284
Effective search space: 8494594080
Effective search space used: 8494594080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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