Clone Name | FLbaf97c20 |
---|---|
Clone Library Name | barley_pub |
>gb|DQ245734.1| Zea mays clone 20010 mRNA sequence Length = 768 Score = 371 bits (187), Expect = 2e-99 Identities = 261/287 (90%), Gaps = 9/287 (3%) Strand = Plus / Plus Query: 81 gcggacggcggcgatgggcggcgg---------cggaggcacgacctacaagggctacac 131 |||||||||||||||||||||||| ||| |||||||| |||||||||||||| Sbjct: 22 gcggacggcggcgatgggcggcggaggcgcgcacggcggcacgacgtacaagggctacac 81 Query: 132 catcccccacaacaagcgctggcacaccgtcgccggcaagggcctctgcgccgtcatgtg 191 |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 82 catcccccacaacaagcgctggcacaccatcgccggcaagggcctctgcgccaccatgtg 141 Query: 192 gttttggattttctacagggctaagcaggacggcgctgtgctcttgggtatgcgtcatcc 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 142 gttttggattttctacagggctaagcaggacggcgctgtgctcttgggtatgcgtcatcc 201 Query: 252 ttgggatggccatgatgatcactctcatggtcatggacatgcacatgagcatgaggcgtc 311 |||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| || Sbjct: 202 ttgggatggccatgatgatcacgcgcatggtcatggacatgcacacgagcatgaggcttc 261 Query: 312 gtcgtcatcatcaccttcccattgaattcaatgctgaaagcgtctga 358 ||||| ||||| || ||||||||| |||| |||||||||| |||| Sbjct: 262 atcgtcgtcatcgccgtcccattgagctcaacgctgaaagcggctga 308 Score = 48.1 bits (24), Expect = 0.042 Identities = 30/32 (93%) Strand = Plus / Plus Query: 370 gcatgtctcgacgcgagtctctgctaataaaa 401 |||||| ||||||| ||||||||||||||||| Sbjct: 327 gcatgtttcgacgcaagtctctgctaataaaa 358
>emb|CT829797.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA013H18, full insert sequence Length = 612 Score = 299 bits (151), Expect = 7e-78 Identities = 181/191 (94%) Strand = Plus / Plus Query: 102 cggcggaggcacgacctacaagggctacaccatcccccacaacaagcgctggcacaccgt 161 |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 77 cggcggcggcacgacgtacaaggggtacaccatcccccacaacaagcgctggcacaccgt 136 Query: 162 cgccggcaagggcctctgcgccgtcatgtggttttggattttctacagggctaagcagga 221 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 137 cgccggcaagggcctctgcgccgtcatgtggttttgggttttctacagggctaagcagga 196 Query: 222 cggcgctgtgctcttgggtatgcgtcatccttgggatggccatgatgatcactctcatgg 281 ||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| Sbjct: 197 cggtgctgttctcttgggcatgcgtcatccttgggatggtcatgatgatcactcacatgg 256 Query: 282 tcatggacatg 292 |||||| |||| Sbjct: 257 tcatgggcatg 267 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 cggcggcgatgggcggcggcgg 107 |||||||||||||||||||||| Sbjct: 52 cggcggcgatgggcggcggcgg 73
>ref|NM_001061043.1| Oryza sativa (japonica cultivar-group) Os05g0122900 (Os05g0122900) mRNA, complete cds Length = 605 Score = 299 bits (151), Expect = 7e-78 Identities = 181/191 (94%) Strand = Plus / Plus Query: 102 cggcggaggcacgacctacaagggctacaccatcccccacaacaagcgctggcacaccgt 161 |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 98 cggcggcggcacgacgtacaaggggtacaccatcccccacaacaagcgctggcacaccgt 157 Query: 162 cgccggcaagggcctctgcgccgtcatgtggttttggattttctacagggctaagcagga 221 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 158 cgccggcaagggcctctgcgccgtcatgtggttttgggttttctacagggctaagcagga 217 Query: 222 cggcgctgtgctcttgggtatgcgtcatccttgggatggccatgatgatcactctcatgg 281 ||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| Sbjct: 218 cggtgctgttctcttgggcatgcgtcatccttgggatggtcatgatgatcactcacatgg 277 Query: 282 tcatggacatg 292 |||||| |||| Sbjct: 278 tcatgggcatg 288 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 cggcggcgatgggcggcggcgg 107 |||||||||||||||||||||| Sbjct: 73 cggcggcgatgggcggcggcgg 94
>dbj|AB072977.1| Oryza sativa OsBLE1 mRNA for BLE1 protein, complete cds Length = 598 Score = 299 bits (151), Expect = 7e-78 Identities = 181/191 (94%) Strand = Plus / Plus Query: 102 cggcggaggcacgacctacaagggctacaccatcccccacaacaagcgctggcacaccgt 161 |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 54 cggcggcggcacgacgtacaaggggtacaccatcccccacaacaagcgctggcacaccgt 113 Query: 162 cgccggcaagggcctctgcgccgtcatgtggttttggattttctacagggctaagcagga 221 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 114 cgccggcaagggcctctgcgccgtcatgtggttttgggttttctacagggctaagcagga 173 Query: 222 cggcgctgtgctcttgggtatgcgtcatccttgggatggccatgatgatcactctcatgg 281 ||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| Sbjct: 174 cggtgctgttctcttgggcatgcgtcatccttgggatggtcatgatgatcactcacatgg 233 Query: 282 tcatggacatg 292 |||||| |||| Sbjct: 234 tcatgggcatg 244 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 cggcggcgatgggcggcggcgg 107 |||||||||||||||||||||| Sbjct: 29 cggcggcgatgggcggcggcgg 50
>dbj|AK104970.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-F11, full insert sequence Length = 605 Score = 299 bits (151), Expect = 7e-78 Identities = 181/191 (94%) Strand = Plus / Plus Query: 102 cggcggaggcacgacctacaagggctacaccatcccccacaacaagcgctggcacaccgt 161 |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 98 cggcggcggcacgacgtacaaggggtacaccatcccccacaacaagcgctggcacaccgt 157 Query: 162 cgccggcaagggcctctgcgccgtcatgtggttttggattttctacagggctaagcagga 221 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 158 cgccggcaagggcctctgcgccgtcatgtggttttgggttttctacagggctaagcagga 217 Query: 222 cggcgctgtgctcttgggtatgcgtcatccttgggatggccatgatgatcactctcatgg 281 ||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| Sbjct: 218 cggtgctgttctcttgggcatgcgtcatccttgggatggtcatgatgatcactcacatgg 277 Query: 282 tcatggacatg 292 |||||| |||| Sbjct: 278 tcatgggcatg 288 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 cggcggcgatgggcggcggcgg 107 |||||||||||||||||||||| Sbjct: 73 cggcggcgatgggcggcggcgg 94
>dbj|AK099375.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033056C02, full insert sequence Length = 597 Score = 299 bits (151), Expect = 7e-78 Identities = 181/191 (94%) Strand = Plus / Plus Query: 102 cggcggaggcacgacctacaagggctacaccatcccccacaacaagcgctggcacaccgt 161 |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 93 cggcggcggcacgacgtacaaggggtacaccatcccccacaacaagcgctggcacaccgt 152 Query: 162 cgccggcaagggcctctgcgccgtcatgtggttttggattttctacagggctaagcagga 221 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 153 cgccggcaagggcctctgcgccgtcatgtggttttgggttttctacagggctaagcagga 212 Query: 222 cggcgctgtgctcttgggtatgcgtcatccttgggatggccatgatgatcactctcatgg 281 ||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| Sbjct: 213 cggtgctgttctcttgggcatgcgtcatccttgggatggtcatgatgatcactcacatgg 272 Query: 282 tcatggacatg 292 |||||| |||| Sbjct: 273 tcatgggcatg 283 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 cggcggcgatgggcggcggcgg 107 |||||||||||||||||||||| Sbjct: 68 cggcggcgatgggcggcggcgg 89
>dbj|AK071296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084I21, full insert sequence Length = 597 Score = 299 bits (151), Expect = 7e-78 Identities = 181/191 (94%) Strand = Plus / Plus Query: 102 cggcggaggcacgacctacaagggctacaccatcccccacaacaagcgctggcacaccgt 161 |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 99 cggcggcggcacgacgtacaaggggtacaccatcccccacaacaagcgctggcacaccgt 158 Query: 162 cgccggcaagggcctctgcgccgtcatgtggttttggattttctacagggctaagcagga 221 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 159 cgccggcaagggcctctgcgccgtcatgtggttttgggttttctacagggctaagcagga 218 Query: 222 cggcgctgtgctcttgggtatgcgtcatccttgggatggccatgatgatcactctcatgg 281 ||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| Sbjct: 219 cggtgctgttctcttgggcatgcgtcatccttgggatggtcatgatgatcactcacatgg 278 Query: 282 tcatggacatg 292 |||||| |||| Sbjct: 279 tcatgggcatg 289 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 cggcggcgatgggcggcggcgg 107 |||||||||||||||||||||| Sbjct: 74 cggcggcgatgggcggcggcgg 95
>gb|AY104595.1| Zea mays PCO064868 mRNA sequence Length = 896 Score = 266 bits (134), Expect = 1e-67 Identities = 170/182 (93%) Strand = Plus / Plus Query: 109 ggcacgacctacaagggctacaccatcccccacaacaagcgctggcacaccgtcgccggc 168 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 391 ggcaccacctacaagggctacaccatcccgcacaacaagcgctggcacaccgtcgccggc 450 Query: 169 aagggcctctgcgccgtcatgtggttttggattttctacagggctaagcaggacggcgct 228 ||||||||||||||||| |||||||| ||| |||||||||||||||||||||| || ||| Sbjct: 451 aagggcctctgcgccgtgatgtggttctgggttttctacagggctaagcaggatggtgct 510 Query: 229 gtgctcttgggtatgcgtcatccttgggatggccatgatgatcactctcatggtcatgga 288 |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 511 acgctcttgggtttgcgtcatccttgggatggacatgatgaccactctcatggtcatgga 570 Query: 289 ca 290 || Sbjct: 571 ca 572
>dbj|AK241158.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065114J19, full insert sequence Length = 655 Score = 242 bits (122), Expect = 1e-60 Identities = 152/162 (93%) Strand = Plus / Plus Query: 129 caccatcccccacaacaagcgctggcacaccgtcgccggcaagggcctctgcgccgtcat 188 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 50 caccatcccgcacaacaagcggtggcacaccgtcgccggcaagggcctctgcgccgtcat 109 Query: 189 gtggttttggattttctacagggctaagcaggacggcgctgtgctcttgggtatgcgtca 248 |||||||||| |||||||||||||||||||||| || ||||| ||||||||| ||||||| Sbjct: 110 gtggttttgggttttctacagggctaagcaggatggtgctgttctcttgggtttgcgtca 169 Query: 249 tccttgggatggccatgatgatcactctcatggtcatggaca 290 |||||||||||| |||||||| || ||||||||||||||||| Sbjct: 170 tccttgggatggtcatgatgaccattctcatggtcatggaca 211
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 159 bits (80), Expect = 2e-35 Identities = 89/92 (96%) Strand = Plus / Minus Query: 102 cggcggaggcacgacctacaagggctacaccatcccccacaacaagcgctggcacaccgt 161 |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1201497 cggcggcggcacgacgtacaaggggtacaccatcccccacaacaagcgctggcacaccgt 1201438 Query: 162 cgccggcaagggcctctgcgccgtcatgtggt 193 |||||||||||||||||||||||||||||||| Sbjct: 1201437 cgccggcaagggcctctgcgccgtcatgtggt 1201406 Score = 79.8 bits (40), Expect = 1e-11 Identities = 49/52 (94%) Strand = Plus / Minus Query: 241 atgcgtcatccttgggatggccatgatgatcactctcatggtcatggacatg 292 |||||||||||||||||||| |||||||||||||| ||||||||||| |||| Sbjct: 1199966 atgcgtcatccttgggatggtcatgatgatcactcacatggtcatgggcatg 1199915 Score = 71.9 bits (36), Expect = 3e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 191 ggttttggattttctacagggctaagcaggacggcgctgtgctcttgg 238 |||||||| ||||||||||||||||||||||||| ||||| ||||||| Sbjct: 1200092 ggttttgggttttctacagggctaagcaggacggtgctgttctcttgg 1200045 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 86 cggcggcgatgggcggcggcgga 108 ||||||||||||||||||||||| Sbjct: 26570081 cggcggcgatgggcggcggcgga 26570103 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 86 cggcggcgatgggcggcggcgg 107 |||||||||||||||||||||| Sbjct: 1201522 cggcggcgatgggcggcggcgg 1201501
>gb|AC093089.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1729_E02, complete sequence Length = 90509 Score = 159 bits (80), Expect = 2e-35 Identities = 89/92 (96%) Strand = Plus / Minus Query: 102 cggcggaggcacgacctacaagggctacaccatcccccacaacaagcgctggcacaccgt 161 |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 51783 cggcggcggcacgacgtacaaggggtacaccatcccccacaacaagcgctggcacaccgt 51724 Query: 162 cgccggcaagggcctctgcgccgtcatgtggt 193 |||||||||||||||||||||||||||||||| Sbjct: 51723 cgccggcaagggcctctgcgccgtcatgtggt 51692 Score = 79.8 bits (40), Expect = 1e-11 Identities = 49/52 (94%) Strand = Plus / Minus Query: 241 atgcgtcatccttgggatggccatgatgatcactctcatggtcatggacatg 292 |||||||||||||||||||| |||||||||||||| ||||||||||| |||| Sbjct: 50252 atgcgtcatccttgggatggtcatgatgatcactcacatggtcatgggcatg 50201 Score = 71.9 bits (36), Expect = 3e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 191 ggttttggattttctacagggctaagcaggacggcgctgtgctcttgg 238 |||||||| ||||||||||||||||||||||||| ||||| ||||||| Sbjct: 50378 ggttttgggttttctacagggctaagcaggacggtgctgttctcttgg 50331 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 86 cggcggcgatgggcggcggcgg 107 |||||||||||||||||||||| Sbjct: 51808 cggcggcgatgggcggcggcgg 51787
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 115 bits (58), Expect = 2e-22 Identities = 64/66 (96%) Strand = Plus / Plus Query: 129 caccatcccccacaacaagcgctggcacaccgtcgccggcaagggcctctgcgccgtcat 188 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 30332539 caccatcccgcacaacaagcggtggcacaccgtcgccggcaagggcctctgcgccgtcat 30332598 Query: 189 gtggtt 194 |||||| Sbjct: 30332599 gtggtt 30332604 Score = 75.8 bits (38), Expect = 2e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 237 gggtatgcgtcatccttgggatggccatgatgatcactctcatggtcatggaca 290 |||| ||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 30333564 gggtttgcgtcatccttgggatggtcatgatgaccattctcatggtcatggaca 30333617 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 191 ggttttggattttctacagggctaagcaggacggcgctgtgctcttgg 238 |||||||| |||||||||||||||||||||| || ||||| ||||||| Sbjct: 30333442 ggttttgggttttctacagggctaagcaggatggtgctgttctcttgg 30333489
>dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548E04 Length = 138037 Score = 115 bits (58), Expect = 2e-22 Identities = 64/66 (96%) Strand = Plus / Plus Query: 129 caccatcccccacaacaagcgctggcacaccgtcgccggcaagggcctctgcgccgtcat 188 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 79134 caccatcccgcacaacaagcggtggcacaccgtcgccggcaagggcctctgcgccgtcat 79193 Query: 189 gtggtt 194 |||||| Sbjct: 79194 gtggtt 79199 Score = 75.8 bits (38), Expect = 2e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 237 gggtatgcgtcatccttgggatggccatgatgatcactctcatggtcatggaca 290 |||| ||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 80159 gggtttgcgtcatccttgggatggtcatgatgaccattctcatggtcatggaca 80212 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 191 ggttttggattttctacagggctaagcaggacggcgctgtgctcttgg 238 |||||||| |||||||||||||||||||||| || ||||| ||||||| Sbjct: 80037 ggttttgggttttctacagggctaagcaggatggtgctgttctcttgg 80084
>ref|NM_001065157.1| Oryza sativa (japonica cultivar-group) Os06g0725400 (Os06g0725400) mRNA, complete cds Length = 162 Score = 113 bits (57), Expect = 8e-22 Identities = 66/69 (95%) Strand = Plus / Plus Query: 129 caccatcccccacaacaagcgctggcacaccgtcgccggcaagggcctctgcgccgtcat 188 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 30 caccatcccgcacaacaagcggtggcacaccgtcgccggcaagggcctctgcgccgtcat 89 Query: 189 gtggttttg 197 |||| |||| Sbjct: 90 gtgggtttg 98 Score = 77.8 bits (39), Expect = 5e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 236 tgggtatgcgtcatccttgggatggccatgatgatcactctcatggtcatggaca 290 ||||| ||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 91 tgggtttgcgtcatccttgggatggtcatgatgaccattctcatggtcatggaca 145
>dbj|AK226354.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL05-16-M10 Length = 474 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 151 tggcacaccgtcgccggcaagggcctctgcgccgtcatgtggttttggattttctacagg 210 |||||||||||| |||| || ||| | |||||||| |||||||| |||||| | |||||| Sbjct: 148 tggcacaccgtcaccggaaaaggcttgtgcgccgttatgtggttctggattctgtacagg 207 Query: 211 gctaagca 218 || ||||| Sbjct: 208 gcaaagca 215
>gb|BT025697.1| Arabidopsis thaliana At1g76200 mRNA, complete cds Length = 210 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 151 tggcacaccgtcgccggcaagggcctctgcgccgtcatgtggttttggattttctacagg 210 |||||||||||| |||| || ||| | |||||||| |||||||| |||||| | |||||| Sbjct: 67 tggcacaccgtcaccggaaaaggcttgtgcgccgttatgtggttctggattctgtacagg 126 Query: 211 gctaagca 218 || ||||| Sbjct: 127 gcaaagca 134
>ref|NM_106270.2| Arabidopsis thaliana unknown protein (AT1G76200) mRNA, complete cds Length = 559 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 151 tggcacaccgtcgccggcaagggcctctgcgccgtcatgtggttttggattttctacagg 210 |||||||||||| |||| || ||| | |||||||| |||||||| |||||| | |||||| Sbjct: 168 tggcacaccgtcaccggaaaaggcttgtgcgccgttatgtggttctggattctgtacagg 227 Query: 211 gctaagca 218 || ||||| Sbjct: 228 gcaaagca 235
>gb|AY085964.1| Arabidopsis thaliana clone 20257 mRNA, complete sequence Length = 487 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 151 tggcacaccgtcgccggcaagggcctctgcgccgtcatgtggttttggattttctacagg 210 |||||||||||| |||| || ||| | |||||||| |||||||| |||||| | |||||| Sbjct: 169 tggcacaccgtcaccggaaaaggcttgtgcgccgttatgtggttctggattctgtacagg 228 Query: 211 gctaagca 218 || ||||| Sbjct: 229 gcaaagca 236
>emb|BX813731.1|CNS0AE2P Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB36ZH11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 456 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 151 tggcacaccgtcgccggcaagggcctctgcgccgtcatgtggttttggattttctacagg 210 |||||||||||| |||| || ||| | |||||||| |||||||| |||||| | |||||| Sbjct: 137 tggcacaccgtcaccggaaaaggcttgtgcgccgttatgtggttctggattctgtacagg 196 Query: 211 gctaagca 218 || ||||| Sbjct: 197 gcaaagca 204
>emb|BX817421.1|CNS0AANH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL21ZD07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 447 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 151 tggcacaccgtcgccggcaagggcctctgcgccgtcatgtggttttggattttctacagg 210 |||||||||||| |||| || ||| | |||||||| |||||||| |||||| | |||||| Sbjct: 138 tggcacaccgtcaccggaaaaggcttgtgcgccgttatgtggttctggattctgtacagg 197 Query: 211 gctaagca 218 || ||||| Sbjct: 198 gcaaagca 205
>gb|AC189295.1| Brassica rapa subsp. pekinensis clone KBrB026G01, complete sequence Length = 122209 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 151 tggcacaccgtcgccggcaagggcctctgcgccgtcatgtggt 193 ||||||||||||||||| |||||| | |||| ||||||||||| Sbjct: 92673 tggcacaccgtcgccggaaagggcttgtgcggcgtcatgtggt 92715
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 48.1 bits (24), Expect = 0.042 Identities = 24/24 (100%) Strand = Plus / Plus Query: 84 gacggcggcgatgggcggcggcgg 107 |||||||||||||||||||||||| Sbjct: 6764561 gacggcggcgatgggcggcggcgg 6764584 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 86 cggcggcgatgggcggcggcgga 108 ||||||||||||||||||||||| Sbjct: 10898411 cggcggcgatgggcggcggcgga 10898389
>dbj|AP002835.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0417G05 Length = 147803 Score = 48.1 bits (24), Expect = 0.042 Identities = 24/24 (100%) Strand = Plus / Plus Query: 84 gacggcggcgatgggcggcggcgg 107 |||||||||||||||||||||||| Sbjct: 46622 gacggcggcgatgggcggcggcgg 46645
>dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E05 Length = 176935 Score = 48.1 bits (24), Expect = 0.042 Identities = 24/24 (100%) Strand = Plus / Plus Query: 84 gacggcggcgatgggcggcggcgg 107 |||||||||||||||||||||||| Sbjct: 116713 gacggcggcgatgggcggcggcgg 116736
>gb|AC189318.1| Brassica rapa subsp. pekinensis clone KBrB036G18, complete sequence Length = 128207 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Plus Query: 151 tggcacaccgtcgccggcaagggcctctgcgccgtcatgtggt 193 ||||||||||||||||| |||||| | |||| ||| ||||||| Sbjct: 55426 tggcacaccgtcgccggaaagggcttgtgcggcgttatgtggt 55468
>gb|AC119291.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052K01, complete sequence Length = 144395 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 86 cggcggcgatgggcggcggcgga 108 ||||||||||||||||||||||| Sbjct: 83556 cggcggcgatgggcggcggcgga 83578
>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0025P13 Length = 133242 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 86 cggcggcgatgggcggcggcgga 108 ||||||||||||||||||||||| Sbjct: 85427 cggcggcgatgggcggcggcgga 85405
>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487H02 Length = 145491 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 86 cggcggcgatgggcggcggcgga 108 ||||||||||||||||||||||| Sbjct: 1253 cggcggcgatgggcggcggcgga 1231
>emb|Z95306.1|CHZ95306 C.hyalina microsatellite marker DNA (id Q38) Length = 249 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 567 aaaatatatatcttgttcaaga 588 |||||||||||||||||||||| Sbjct: 88 aaaatatatatcttgttcaaga 109
>emb|AL844575.4| Mouse DNA sequence from clone RP23-156F1 on chromosome 2, complete sequence Length = 190718 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Plus Query: 402 gcacaaccatatgtcatttcatccct 427 ||||| |||||||||||||||||||| Sbjct: 9898 gcacacccatatgtcatttcatccct 9923
>emb|CT833518.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128C06, full insert sequence Length = 1304 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 ggcggcgatgggcggcggcgg 107 ||||||||||||||||||||| Sbjct: 90 ggcggcgatgggcggcggcgg 110
>gb|AC189009.3| Gallus gallus BAC clone CH261-51H3 from chromosome z, complete sequence Length = 164903 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 ccacacagagaggcacagagg 35 ||||||||||||||||||||| Sbjct: 108616 ccacacagagaggcacagagg 108636
>ref|NM_001074469.1| Oryza sativa (japonica cultivar-group) Os11g0497000 (Os11g0497000) mRNA, complete cds Length = 1356 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 ggcggcgatgggcggcggcgg 107 ||||||||||||||||||||| Sbjct: 108 ggcggcgatgggcggcggcgg 128
>ref|NM_001053474.1| Oryza sativa (japonica cultivar-group) Os02g0511900 (Os02g0511900) mRNA, complete cds Length = 6609 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 87 ggcggcgatgggcggcggcggaggc 111 ||||||||||| ||||||||||||| Sbjct: 16 ggcggcgatggtcggcggcggaggc 40
>gb|CP000395.1| Borrelia afzelii PKo, complete genome Length = 905394 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 566 gaaaatatatatcttgttcaagaag 590 ||||||||||||||| ||||||||| Sbjct: 891649 gaaaatatatatcttcttcaagaag 891673
>dbj|AK226928.1| Arabidopsis thaliana mRNA for bZIP transcription factor AtbZip28, complete cds, clone: RAFL09-25-P21 Length = 2258 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 309 gtcgtcgtcatcatcaccttc 329 ||||||||||||||||||||| Sbjct: 602 gtcgtcgtcatcatcaccttc 582
>ref|NM_111917.3| Arabidopsis thaliana DNA binding / transcription factor (AT3G10800) mRNA, complete cds Length = 2283 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 309 gtcgtcgtcatcatcaccttc 329 ||||||||||||||||||||| Sbjct: 642 gtcgtcgtcatcatcaccttc 622
>gb|AC135569.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0018F17, complete sequence Length = 104291 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 ggcggcgatgggcggcggcgg 107 ||||||||||||||||||||| Sbjct: 50106 ggcggcgatgggcggcggcgg 50126
>gb|AC159244.4| Mus musculus BAC clone RP24-309L4 from chromosome 12, complete sequence Length = 216500 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 226 gctgtgctcttgggtatgcgtcatc 250 ||||||||||||||||| ||||||| Sbjct: 116619 gctgtgctcttgggtattcgtcatc 116643
>gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence, complete sequence Length = 80379 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 309 gtcgtcgtcatcatcaccttc 329 ||||||||||||||||||||| Sbjct: 36513 gtcgtcgtcatcatcaccttc 36533
>gb|AC148816.3| Medicago truncatula chromosome 7 BAC clone mth2-16i24, complete sequence Length = 123655 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 cacaaccatatgtcatttcat 423 ||||||||||||||||||||| Sbjct: 79698 cacaaccatatgtcatttcat 79718
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 ggcggcgatgggcggcggcgg 107 ||||||||||||||||||||| Sbjct: 17076150 ggcggcgatgggcggcggcgg 17076170
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 87 ggcggcgatgggcggcggcggaggc 111 ||||||||||| ||||||||||||| Sbjct: 18448686 ggcggcgatggtcggcggcggaggc 18448710
>emb|AL591031.3| Human DNA sequence from clone RP11-151D14 on chromosome 9q13-21.2 Contains a novel gene and the ALDH1A1 gene for aldehyde dehydrogenase 1 family member A1, complete sequence Length = 136895 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 tttgaaagtgttaatttgttt 454 ||||||||||||||||||||| Sbjct: 92129 tttgaaagtgttaatttgttt 92109
>gb|AC093113.4| Homo sapiens BAC clone RP11-789A18 from 2, complete sequence Length = 175556 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 435 ttgaaagtgttaatttgttta 455 ||||||||||||||||||||| Sbjct: 84294 ttgaaagtgttaatttgttta 84274
>dbj|AP004861.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0001A11 Length = 153252 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 87 ggcggcgatgggcggcggcggaggc 111 ||||||||||| ||||||||||||| Sbjct: 111610 ggcggcgatggtcggcggcggaggc 111634
>gb|BT002502.1| Arabidopsis thaliana putative bZIP transcription factor (At3g10800) mRNA, complete cds Length = 2181 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 309 gtcgtcgtcatcatcaccttc 329 ||||||||||||||||||||| Sbjct: 601 gtcgtcgtcatcatcaccttc 581
>dbj|AK111924.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-C03, full insert sequence Length = 1356 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 ggcggcgatgggcggcggcgg 107 ||||||||||||||||||||| Sbjct: 108 ggcggcgatgggcggcggcgg 128
>emb|AL113665.1|CNS01B1L Botrytis cinerea strain T4 cDNA library Length = 636 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 278 atggtcatggacatgcacatg 298 ||||||||||||||||||||| Sbjct: 251 atggtcatggacatgcacatg 271 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 126,608,701 Number of extensions: 7663599 Number of successful extensions: 165723 Number of sequences better than 10.0: 50 Number of HSP's gapped: 165723 Number of HSP's successfully gapped: 72 Length of query: 688 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 666 Effective length of database: 18,508,616,841 Effective search space: 12326738816106 Effective search space used: 12326738816106 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)