Clone Information

BLAST Search Result

Clone Name	FLbaf99j03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_001050293.1\| Oryza sativa (japonica cultivar-group) Os01g...	139	1e-29
2	dbj\|AK108727.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	139	1e-29
3	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	131	3e-27
4	dbj\|AP003294.2\| Oryza sativa (japonica cultivar-group) genomic D...	131	3e-27
5	ref\|NM_001061471.1\| Oryza sativa (japonica cultivar-group) Os05g...	96	2e-16
6	gb\|AC108498.2\| Oryza sativa (japonica cultivar-group) chromosome...	96	2e-16
7	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	96	2e-16
8	dbj\|AK062517.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	96	2e-16
9	emb\|CT833388.1\| Oryza sativa (indica cultivar-group) cDNA clone:...	92	3e-15
10	gb\|DQ244673.1\| Zea mays clone 9993 mRNA sequence	76	2e-10
11	gb\|AY107145.1\| Zea mays PCO097814 mRNA sequence	70	1e-08
12	ref\|NM_001064252.1\| Oryza sativa (japonica cultivar-group) Os06g...	54	6e-04
13	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	54	6e-04
14	dbj\|AP004743.2\| Oryza sativa (japonica cultivar-group) genomic D...	54	6e-04
15	dbj\|AK121505.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	6e-04
16	gb\|AY105518.1\| Zea mays PCO093357 mRNA sequence	54	6e-04
17	gb\|AC116334.2\| Homo sapiens chromosome 5 clone CTD-2277F12, comp...	48	0.035
18	gb\|AC008722.6\| Homo sapiens chromosome 5 clone CTB-94F21, comple...	48	0.035
19	gb\|CP000386.1\| Rubrobacter xylanophilus DSM 9941, complete genome	46	0.14
20	dbj\|AP005468.2\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.14
21	gb\|AY514699.1\| Canis familiaris Sp1 transcriptional activation c...	44	0.55
22	gb\|AC117253.3\| Mus musculus BAC clone RP24-405A12 from chromosom...	44	0.55
23	ref\|NM_001061768.1\| Oryza sativa (japonica cultivar-group) Os05g...	42	2.2
24	emb\|AL109933.25\|HSDJ81D8 Human DNA sequence from clone RP1-81D8 ...	42	2.2
25	gb\|AY111818.1\| Zea mays CL6775_1 mRNA sequence	42	2.2
26	gb\|AC144739.3\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.2
27	emb\|CT573213.2\| Frankia alni str. ACN14A chromosome, complete se...	40	8.6
28	gb\|AC186395.2\| Pan troglodytes BAC clone CH251-100K18 from chrom...	40	8.6
29	ref\|XM_359632.1\| Magnaporthe grisea 70-15 hypothetical protein (...	40	8.6
30	gb\|AC130210.4\| Mus musculus BAC clone RP24-344N22 from chromosom...	40	8.6
31	gb\|CP000264.1\| Jannaschia sp. CCS1, complete genome	40	8.6
32	gb\|AC068213.7\| Homo sapiens chromosome 15, clone RP11-628M2, com...	40	8.6
33	gb\|AC106013.2\| Homo sapiens chromosome 8, clone RP11-1109L18, co...	40	8.6
34	gb\|AC012101.7\| Homo sapiens chromosome 18, clone RP11-396D4, com...	40	8.6
35	emb\|AL365364.19\| Human DNA sequence from clone RP11-624L12 on ch...	40	8.6
36	emb\|AL389886.10\| Human DNA sequence from clone RP1-237C24 on chr...	40	8.6
37	emb\|AL022324.1\|HS246H3 Human DNA sequence from clone CTA-246H3 o...	40	8.6
38	emb\|AL939117.1\|SCO939117 Streptomyces coelicolor A3(2) complete ...	40	8.6
39	emb\|BX537277.15\| Zebrafish DNA sequence from clone DKEY-45D16 in...	40	8.6
40	emb\|CR384100.8\| Zebrafish DNA sequence from clone DKEYP-22H2 in ...	40	8.6
41	gb\|AC008770.7\| Homo sapiens chromosome 19 clone CTD-2006C1, comp...	40	8.6
42	emb\|BX601648.7\| Zebrafish DNA sequence from clone DKEY-14F19 in ...	40	8.6
43	gb\|AC010975.9\| Homo sapiens BAC clone RP11-191H23 from 2, comple...	40	8.6
44	dbj\|BS000182.1\| Pan troglodytes chromosome 22 clone:PTB-301D17, ...	40	8.6
45	gb\|AC116003.7\| Homo sapiens chromosome 18, clone RP11-321M21, co...	40	8.6
46	emb\|BX005330.13\| Zebrafish DNA sequence from clone CH211-113D13,...	40	8.6
47	emb\|BX664610.10\| Zebrafish DNA sequence from clone DKEY-11N6 in ...	40	8.6
48	dbj\|AP001717.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	8.6
49	dbj\|AP005716.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	8.6
50	dbj\|AP000346.1\| Homo sapiens genomic DNA, chromosome 22q11.2, cl...	40	8.6
51	dbj\|AP000192.1\| Homo sapiens genomic DNA, chromosome 21q22.1, D2...	40	8.6
52	dbj\|AP000310.1\| Homo sapiens genomic DNA, chromosome 21q22.1, D2...	40	8.6
53	dbj\|AB022430.1\| Homo sapiens CILP gene for cartilage intermediat...	40	8.6
54	dbj\|AP000116.1\| Homo sapiens genomic DNA of 21q22.1, GART and AM...	40	8.6

>ref|NM_001050293.1| Oryza sativa (japonica cultivar-group) Os01g0657000 (Os01g0657000)
           mRNA, complete cds
          Length = 748
 Score =  139 bits (70), Expect = 1e-29
 Identities = 112/126 (88%)
 Strand = Plus / Plus

                                                                       
Query: 227 ccagcgatggaacgagcgtggaccaagggatcgcgtacgtgctcatgttcgtggcgcttg 286
           |||| |||||||| |||||||||||||||||||| || ||||| ||||||||||| ||||
Sbjct: 242 ccagtgatggaacaagcgtggaccaagggatcgcctatgtgctgatgttcgtggcacttg 301

                                                                       
Query: 287 ccctcacctacctcatccacccgctggacgcctcctccgcctacagcctcctctgaacgc 346
           ||||||||||||||||||||||  |||| || |||||||||||||  ||| ||||||| |
Sbjct: 302 ccctcacctacctcatccaccccttggatgcatcctccgcctacaagctcttctgaactc 361

                 
Query: 347 aactcc 352
           ||||||
Sbjct: 362 aactcc 367

to top

>dbj|AK108727.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-C11, full
           insert sequence
          Length = 761

 Score =  139 bits (70), Expect = 1e-29
 Identities = 112/126 (88%)
 Strand = Plus / Plus

                                                                       
Query: 227 ccagcgatggaacgagcgtggaccaagggatcgcgtacgtgctcatgttcgtggcgcttg 286
           |||| |||||||| |||||||||||||||||||| || ||||| ||||||||||| ||||
Sbjct: 242 ccagtgatggaacaagcgtggaccaagggatcgcctatgtgctgatgttcgtggcacttg 301

                                                                       
Query: 287 ccctcacctacctcatccacccgctggacgcctcctccgcctacagcctcctctgaacgc 346
           ||||||||||||||||||||||  |||| || |||||||||||||  ||| ||||||| |
Sbjct: 302 ccctcacctacctcatccaccccttggatgcatcctccgcctacaagctcttctgaactc 361

                 
Query: 347 aactcc 352
           ||||||
Sbjct: 362 aactcc 367

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score =  131 bits (66), Expect = 3e-27
 Identities = 105/118 (88%)
 Strand = Plus / Plus

                                                                            
Query: 235      ggaacgagcgtggaccaagggatcgcgtacgtgctcatgttcgtggcgcttgccctcacc 294
                ||||| |||||||||||||||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 26717666 ggaacaagcgtggaccaagggatcgcctatgtgctgatgttcgtggcacttgccctcacc 26717725

                                                                          
Query: 295      tacctcatccacccgctggacgcctcctccgcctacagcctcctctgaacgcaactcc 352
                ||||||||||||||  |||| || |||||||||||||  ||| ||||||| |||||||
Sbjct: 26717726 tacctcatccaccccttggatgcatcctccgcctacaagctcttctgaactcaactcc 26717783

to top

>dbj|AP003294.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0694A04
          Length = 141476

 Score =  131 bits (66), Expect = 3e-27
 Identities = 105/118 (88%)
 Strand = Plus / Plus

                                                                         
Query: 235   ggaacgagcgtggaccaagggatcgcgtacgtgctcatgttcgtggcgcttgccctcacc 294
             ||||| |||||||||||||||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 64758 ggaacaagcgtggaccaagggatcgcctatgtgctgatgttcgtggcacttgccctcacc 64817

                                                                       
Query: 295   tacctcatccacccgctggacgcctcctccgcctacagcctcctctgaacgcaactcc 352
             ||||||||||||||  |||| || |||||||||||||  ||| ||||||| |||||||
Sbjct: 64818 tacctcatccaccccttggatgcatcctccgcctacaagctcttctgaactcaactcc 64875

to top

>ref|NM_001061471.1| Oryza sativa (japonica cultivar-group) Os05g0217000 (Os05g0217000)
           mRNA, complete cds
          Length = 459

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 78/88 (88%)
 Strand = Plus / Plus

                                                                       
Query: 244 gtggaccaagggatcgcgtacgtgctcatgttcgtggcgcttgccctcacctacctcatc 303
           ||||| ||||||||||| ||| |||| ||| |||||||||| |  |||||||||||||||
Sbjct: 158 gtggatcaagggatcgcatacctgctgatgatcgtggcgctggtgctcacctacctcatc 217

                                       
Query: 304 cacccgctggacgcctcctccgcctaca 331
           ||||| || |||||||||||||||||||
Sbjct: 218 caccctctcgacgcctcctccgcctaca 245

to top

>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08,
             complete sequence
          Length = 148348

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                         
Query: 244   gtggaccaagggatcgcgtacgtgctcatgttcgtggcgcttgccctcacctacctcatc 303
             ||||| ||||||||||| ||| |||| ||| |||||||||| |  |||||||||||||||
Sbjct: 89579 gtggatcaagggatcgcatacctgctgatgatcgtggcgctggtgctcacctacctcatc 89520

                                         
Query: 304   cacccgctggacgcctcctccgcctaca 331
             ||||| || |||||||||||||||||||
Sbjct: 89519 caccctctcgacgcctcctccgcctaca 89492

to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                           
Query: 244     gtggaccaagggatcgcgtacgtgctcatgttcgtggcgcttgccctcacctacctcatc 303
               ||||| ||||||||||| ||| |||| ||| |||||||||| |  |||||||||||||||
Sbjct: 7134730 gtggatcaagggatcgcatacctgctgatgatcgtggcgctggtgctcacctacctcatc 7134671

                                           
Query: 304     cacccgctggacgcctcctccgcctaca 331
               ||||| || |||||||||||||||||||
Sbjct: 7134670 caccctctcgacgcctcctccgcctaca 7134643



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 164      tggccatcgtcgtcgtgctgg 184
                |||||||||||||||||||||
Sbjct: 15560517 tggccatcgtcgtcgtgctgg 15560497

to top

>dbj|AK062517.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-C09, full
           insert sequence
          Length = 459

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 78/88 (88%)
 Strand = Plus / Plus

                                                                       
Query: 244 gtggaccaagggatcgcgtacgtgctcatgttcgtggcgcttgccctcacctacctcatc 303
           ||||| ||||||||||| ||| |||| ||| |||||||||| |  |||||||||||||||
Sbjct: 158 gtggatcaagggatcgcatacctgctgatgatcgtggcgctggtgctcacctacctcatc 217

                                       
Query: 304 cacccgctggacgcctcctccgcctaca 331
           ||||| || |||||||||||||||||||
Sbjct: 218 caccctctcgacgcctcctccgcctaca 245

to top

>emb|CT833388.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN061K14, full
           insert sequence
          Length = 512

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 76/86 (88%)
 Strand = Plus / Plus

                                                                       
Query: 244 gtggaccaagggatcgcgtacgtgctcatgttcgtggcgcttgccctcacctacctcatc 303
           ||||| ||||||||||| ||| |||| ||| |||||||||| |  |||||||||||||||
Sbjct: 214 gtggatcaagggatcgcatacctgctgatgatcgtggcgctggtgctcacctacctcatc 273

                                     
Query: 304 cacccgctggacgcctcctccgccta 329
           ||||| || |||||||||||||||||
Sbjct: 274 caccctctcgacgcctcctccgccta 299

to top

>gb|DQ244673.1| Zea mays clone 9993 mRNA sequence
          Length = 564

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 68/78 (87%)
 Strand = Plus / Plus

                                                                       
Query: 247 gaccaagggatcgcgtacgtgctcatgttcgtggcgcttgccctcacctacctcatccac 306
           ||||| || ||||| |||||||| ||| | ||||| ||||  ||||||||||||||||| 
Sbjct: 246 gaccagggtatcgcatacgtgctgatgctggtggcccttgtgctcacctacctcatccat 305

                             
Query: 307 ccgctggacgcctcctcc 324
           ||||||||||||||||||
Sbjct: 306 ccgctggacgcctcctcc 323

to top

>gb|AY107145.1| Zea mays PCO097814 mRNA sequence
          Length = 426

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                       
Query: 247 gaccaagggatcgcgtacgtgctcatgttcgtggcgcttgccctcacctacctcatccac 306
           ||||| || ||||||||| |||| ||| || ||||||| |  ||||||||||||||||||
Sbjct: 189 gaccagggcatcgcgtacctgctgatgatcatggcgctggtgctcacctacctcatccac 248

                          
Query: 307 ccgctggacgcctcc 321
           || ||||||||||||
Sbjct: 249 cctctggacgcctcc 263

to top

>ref|NM_001064252.1| Oryza sativa (japonica cultivar-group) Os06g0505700 (Os06g0505700)
           mRNA, complete cds
          Length = 758

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 289 ctcacctacctcatccacccgctggacgcct 319
           ||||||||||||||||| |||||||||||||
Sbjct: 558 ctcacctacctcatccatccgctggacgcct 588

to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                               
Query: 289      ctcacctacctcatccacccgctggacgcct 319
                ||||||||||||||||| |||||||||||||
Sbjct: 17768538 ctcacctacctcatccatccgctggacgcct 17768568



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 25       cttctcttgtgcctccccttcctctcc 51
                ||||||||| |||||||||||||||||
Sbjct: 18668622 cttctcttgggcctccccttcctctcc 18668596

to top

>dbj|AP004743.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0026G06
          Length = 123129

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                            
Query: 289   ctcacctacctcatccacccgctggacgcct 319
             ||||||||||||||||| |||||||||||||
Sbjct: 38960 ctcacctacctcatccatccgctggacgcct 38990

to top

>dbj|AK121505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022N03, full
           insert sequence
          Length = 759

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 289 ctcacctacctcatccacccgctggacgcct 319
           ||||||||||||||||| |||||||||||||
Sbjct: 559 ctcacctacctcatccatccgctggacgcct 589

to top

>gb|AY105518.1| Zea mays PCO093357 mRNA sequence
          Length = 464

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 289 ctcacctacctcatccacccgctggacgcctcctccgcctaca 331
           ||||||||||| ||||||||||| ||||| |||||| ||||||
Sbjct: 352 ctcacctacctgatccacccgcttgacgcgtcctccccctaca 394

to top

>gb|AC116334.2| Homo sapiens chromosome 5 clone CTD-2277F12, complete sequence
          Length = 120857

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 454   gtagtttcttctttctagcttttt 477
             ||||||||||||||||||||||||
Sbjct: 13438 gtagtttcttctttctagcttttt 13461

to top

>gb|AC008722.6| Homo sapiens chromosome 5 clone CTB-94F21, complete sequence
          Length = 138264

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 454   gtagtttcttctttctagcttttt 477
             ||||||||||||||||||||||||
Sbjct: 52843 gtagtttcttctttctagcttttt 52820

to top

>gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome
          Length = 3225748

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 180     gctggcctccgtggccaccgccc 202
               |||||||||||||||||||||||
Sbjct: 1633795 gctggcctccgtggccaccgccc 1633773

to top

>dbj|AP005468.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0020P04
          Length = 153894

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 25     cttctcttgtgcctccccttcctctcc 51
              ||||||||| |||||||||||||||||
Sbjct: 120725 cttctcttgggcctccccttcctctcc 120699

to top

>gb|AY514699.1| Canis familiaris Sp1 transcriptional activation cofactor subunit 3
           (CRSP3) gene, exon 25
          Length = 115

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 512 ttgtacgtagtgatgtaatgcagttgttct 541
           ||||||||||| ||| ||||||||||||||
Sbjct: 40  ttgtacgtagtaatggaatgcagttgttct 69

to top

>gb|AC117253.3| Mus musculus BAC clone RP24-405A12 from chromosome 19, complete
             sequence
          Length = 142903

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 33    gtgcctccccttcctctcctga 54
             ||||||||||||||||||||||
Sbjct: 69088 gtgcctccccttcctctcctga 69109

to top

>ref|NM_001061768.1| Oryza sativa (japonica cultivar-group) Os05g0335500 (Os05g0335500)
           mRNA, complete cds
          Length = 681

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 164 tggccatcgtcgtcgtgctgg 184
           |||||||||||||||||||||
Sbjct: 91  tggccatcgtcgtcgtgctgg 71

to top

>emb|AL109933.25|HSDJ81D8 Human DNA sequence from clone RP1-81D8 on chromosome 6q25.3-26 Contains
              the PLG gene for plasminogen, the 5' end of the LPA gene
              for lipoprotein (Lp(a)), a novel gene, a pseudogene similar
              to part of plasminogen and a CpG island, complete sequence
          Length = 163599

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 456    agtttcttctttctagctttt 476
              |||||||||||||||||||||
Sbjct: 141732 agtttcttctttctagctttt 141712

to top

>gb|AY111818.1| Zea mays CL6775_1 mRNA sequence
          Length = 708

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 311 tggacgcctcctccgcctaca 331
           |||||||||||||||||||||
Sbjct: 333 tggacgcctcctccgcctaca 353

to top

>gb|AC144739.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0049D13, complete sequence
          Length = 136942

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   tggccatcgtcgtcgtgctgg 184
             |||||||||||||||||||||
Sbjct: 90007 tggccatcgtcgtcgtgctgg 89987

to top

>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence
          Length = 7497934

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    gccatcgtcgtcgtgctggc 185
              ||||||||||||||||||||
Sbjct: 496379 gccatcgtcgtcgtgctggc 496360

to top

>gb|AC186395.2| Pan troglodytes BAC clone CH251-100K18 from chromosome unknown,
             complete sequence
          Length = 180539

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   tctatgtagtttcttctttc 468
             ||||||||||||||||||||
Sbjct: 88714 tctatgtagtttcttctttc 88695

to top

>ref|XM_359632.1| Magnaporthe grisea 70-15 hypothetical protein (MG05145.4) partial
           mRNA
          Length = 936

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 288 cctcacctacctcatccacc 307
           ||||||||||||||||||||
Sbjct: 372 cctcacctacctcatccacc 391

to top

>gb|AC130210.4| Mus musculus BAC clone RP24-344N22 from chromosome 7, complete sequence
          Length = 186858

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    ccttcctctcctgatctcca 60
             ||||||||||||||||||||
Sbjct: 56919 ccttcctctcctgatctcca 56900

to top

>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 307     ccgctggacgcctcctccgc 326
               ||||||||||||||||||||
Sbjct: 2389089 ccgctggacgcctcctccgc 2389108

to top

>gb|AC068213.7| Homo sapiens chromosome 15, clone RP11-628M2, complete sequence
          Length = 146606

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    cctccccttcctctcctgat 55
             ||||||||||||||||||||
Sbjct: 87491 cctccccttcctctcctgat 87510

to top

>gb|AC106013.2| Homo sapiens chromosome 8, clone RP11-1109L18, complete sequence
          Length = 166093

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 525   tgtaatgcagttgttctcag 544
             ||||||||||||||||||||
Sbjct: 97049 tgtaatgcagttgttctcag 97068

to top

>gb|AC012101.7| Homo sapiens chromosome 18, clone RP11-396D4, complete sequence
          Length = 168965

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   cttgccctcacctacctcat 302
             ||||||||||||||||||||
Sbjct: 24824 cttgccctcacctacctcat 24805

to top

>emb|AL365364.19| Human DNA sequence from clone RP11-624L12 on chromosome 10 Contains a
            ribosomal protein L17 (RPL17) pseudogene and the 3'end of
            the FER1L3 gene for fer-1-like 3, myoferlin (C. elegans),
            complete sequence
          Length = 173864

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 475  tttcagttggagatttgtga 494
            ||||||||||||||||||||
Sbjct: 5529 tttcagttggagatttgtga 5548

to top

>emb|AL389886.10| Human DNA sequence from clone RP1-237C24 on chromosome 20 Contains the
             3' end of the SLC23A2 gene for solute carrier family 23
             (nucleobase transporters) member 2, complete sequence
          Length = 117824

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   cctgccccggcacccaccgc 227
             ||||||||||||||||||||
Sbjct: 82123 cctgccccggcacccaccgc 82142

to top

>emb|AL022324.1|HS246H3 Human DNA sequence from clone CTA-246H3 on chromosome 22, complete
              sequence
          Length = 140679

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     ccccttcctctcctgatctc 58
              ||||||||||||||||||||
Sbjct: 136495 ccccttcctctcctgatctc 136476

to top

>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 344    cgcaactccggccccgccatgtcc 367
              ||||||||||||||||||| ||||
Sbjct: 191420 cgcaactccggccccgccacgtcc 191443

to top

>emb|BX537277.15| Zebrafish DNA sequence from clone DKEY-45D16 in linkage group 2, complete
              sequence
          Length = 263014

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 458    tttcttctttctagcttttt 477
              ||||||||||||||||||||
Sbjct: 158023 tttcttctttctagcttttt 158042

to top

>emb|CR384100.8| Zebrafish DNA sequence from clone DKEYP-22H2 in linkage group 13,
            complete sequence
          Length = 172918

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 517  cgtagtgatgtaatgcagtt 536
            ||||||||||||||||||||
Sbjct: 3110 cgtagtgatgtaatgcagtt 3091

to top

>gb|AC008770.7| Homo sapiens chromosome 19 clone CTD-2006C1, complete sequence
          Length = 178184

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 202    cagggccctgccccggcacc 221
              ||||||||||||||||||||
Sbjct: 108458 cagggccctgccccggcacc 108439

to top

>emb|BX601648.7| Zebrafish DNA sequence from clone DKEY-14F19 in linkage group 11,
             complete sequence
          Length = 230487

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 458   tttcttctttctagcttttt 477
             ||||||||||||||||||||
Sbjct: 87015 tttcttctttctagcttttt 87034

to top

>gb|AC010975.9| Homo sapiens BAC clone RP11-191H23 from 2, complete sequence
          Length = 171249

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    ccccttcctctcctgatctc 58
             ||||||||||||||||||||
Sbjct: 32536 ccccttcctctcctgatctc 32555

to top

>dbj|BS000182.1| Pan troglodytes chromosome 22 clone:PTB-301D17, map 22, complete
             sequences
          Length = 163049

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   tctatgtagtttcttctttc 468
             ||||||||||||||||||||
Sbjct: 83406 tctatgtagtttcttctttc 83425

to top

>gb|AC116003.7| Homo sapiens chromosome 18, clone RP11-321M21, complete sequence
          Length = 189167

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   cttgccctcacctacctcat 302
             ||||||||||||||||||||
Sbjct: 97089 cttgccctcacctacctcat 97070

to top

>emb|BX005330.13| Zebrafish DNA sequence from clone CH211-113D13, complete sequence
          Length = 181197

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 517   cgtagtgatgtaatgcagtt 536
             ||||||||||||||||||||
Sbjct: 49294 cgtagtgatgtaatgcagtt 49275

to top

>emb|BX664610.10| Zebrafish DNA sequence from clone DKEY-11N6 in linkage group 22, complete
              sequence
          Length = 206964

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 482    tggagatttgtgagatgcca 501
              ||||||||||||||||||||
Sbjct: 153676 tggagatttgtgagatgcca 153695

to top

>dbj|AP001717.1| Homo sapiens genomic DNA, chromosome 21q, section 61/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 449    tctatgtagtttcttctttc 468
              ||||||||||||||||||||
Sbjct: 305713 tctatgtagtttcttctttc 305732

to top

>dbj|AP005716.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1445E9, complete
             sequence
          Length = 151880

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 525   tgtaatgcagttgttctcag 544
             ||||||||||||||||||||
Sbjct: 58233 tgtaatgcagttgttctcag 58252

to top

>dbj|AP000346.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1572G7
          Length = 151600

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    ccccttcctctcctgatctc 58
             ||||||||||||||||||||
Sbjct: 79546 ccccttcctctcctgatctc 79565

to top

>dbj|AP000192.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             Q78C10-f32E9, segment 19/21, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   tctatgtagtttcttctttc 468
             ||||||||||||||||||||
Sbjct: 24539 tctatgtagtttcttctttc 24558

to top

>dbj|AP000310.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
            clone:f65H9, complete sequence
          Length = 17138

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 449  tctatgtagtttcttctttc 468
            ||||||||||||||||||||
Sbjct: 4904 tctatgtagtttcttctttc 4923

to top

>dbj|AB022430.1| Homo sapiens CILP gene for cartilage intermediate layer protein,
            complete cds
          Length = 19486

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 36   cctccccttcctctcctgat 55
            ||||||||||||||||||||
Sbjct: 4274 cctccccttcctctcctgat 4293

to top

>dbj|AP000116.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related,
             Q78C10-149C3 region, segment 19/20
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   tctatgtagtttcttctttc 468
             ||||||||||||||||||||
Sbjct: 24539 tctatgtagtttcttctttc 24558


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 90,597,352
Number of extensions: 5675178
Number of successful extensions: 101136
Number of sequences better than 10.0: 54
Number of HSP's gapped: 101136
Number of HSP's successfully gapped: 56
Length of query: 588
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 566
Effective length of database: 18,508,616,841
Effective search space: 10475877132006
Effective search space used: 10475877132006
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result