ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf99i17 |
|---|---|
| Clone Library Name | barley_pub |
>Q9QXN3:TRIP4_MOUSE Activating signal cointegrator 1 - Mus musculus (Mouse)| Length = 581 Score = 114 bits (284), Expect = 1e-24 Identities = 63/178 (35%), Positives = 93/178 (52%), Gaps = 31/178 (17%) Frame = +1 Query: 562 PCSCQARLHNLVSNCLSCGKIVCEQEGEGPCSFCGSLV---------------------- 675 PC C + H L++NCL CG+IVCEQEG GPC FCGSLV Sbjct: 170 PCDCLGQKHKLINNCLVCGRIVCEQEGSGPCLFCGSLVCTNEEQDILQRDSNKSQKLLKK 229 Query: 676 LMEGSTYAGLSDVG----VPLSDTEV-----AAEAYAKRLVDYDRNSAARTKVYDDQSDY 828 LM G+ +G DV +P ++ + A + ++L+++DR S RT+V DD+SDY Sbjct: 230 LMSGAETSGKVDVSTKDLLPHQESRMKSGLEKAIKHKEKLLEFDRTSIRRTQVIDDESDY 289 Query: 829 FEMEGNSWLSSKGKTNLKKVHDEAQDAAEKQKGKVTVTFDLVGRKVILNKDETAESES 1002 F + N WLS + L+K +E ++ + VT D GRK++ +++ AE S Sbjct: 290 FASDSNQWLSKVEREMLQKREEELRELRHASRLSKKVTIDFAGRKILEDENPLAEYHS 347
>Q15650:TRIP4_HUMAN Activating signal cointegrator 1 - Homo sapiens (Human)| Length = 581 Score = 111 bits (277), Expect = 1e-23 Identities = 61/178 (34%), Positives = 89/178 (50%), Gaps = 31/178 (17%) Frame = +1 Query: 562 PCSCQARLHNLVSNCLSCGKIVCEQEGEGPCSFCGSLV---------------------- 675 PC C + H L++NCL CG+IVCEQEG GPC FCG+LV Sbjct: 170 PCDCLGQKHKLINNCLICGRIVCEQEGSGPCLFCGTLVCTHEEQDILQRDSNKSQKLLKK 229 Query: 676 LMEGSTYAGLSDVG----VPLSDTEV-----AAEAYAKRLVDYDRNSAARTKVYDDQSDY 828 LM G +G D+ +P + + A + +L+++DR S RT+V DD+SDY Sbjct: 230 LMSGVENSGKVDISTKDLLPHQELRIKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDY 289 Query: 829 FEMEGNSWLSSKGKTNLKKVHDEAQDAAEKQKGKVTVTFDLVGRKVILNKDETAESES 1002 F + N WLS + L+K +E ++ + VT D GRK++ ++ AE S Sbjct: 290 FASDSNQWLSKLERETLQKREEELRELRHASRLSKKVTIDFAGRKILEEENSLAEYHS 347
>O13855:YEX1_SCHPO Uncharacterized protein C1A6.01c - Schizosaccharomyces pombe (Fission| yeast) Length = 455 Score = 72.4 bits (176), Expect = 5e-12 Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 45/193 (23%) Frame = +1 Query: 565 CSCQARLHNL---VSNCLSCGKIVCEQEGEGPCSFCGSLVLM-------------EGSTY 696 C+CQ R H L NCL+CGKI+C EG GPC+FC + V+ EGS Sbjct: 195 CNCQGRKHPLNEAAPNCLNCGKIICIVEGIGPCTFCDNPVISKAQQLELIQELKHEGSRL 254 Query: 697 ------------------------AGLSDVGVPLSDTEVAAEAYAKR---LVDYDRNSAA 795 + L + + E A+ +R L+++DR SA Sbjct: 255 KQAANQKRKSKTVSSKNNFQRLQNSSLHSIFLDPKQLEQKAQEAEERKNVLLNFDRTSAQ 314 Query: 796 RTKVYDDQSDY--FEMEGNSWLSSKGKTNLKKVHDEAQDAAEKQKGKVTVTFDLVGRKVI 969 RT++ D+ +D+ + ++W S K L V + A +++K K ++ L G+KV+ Sbjct: 315 RTRIIDEAADFDPTSLASDTWASPAEKA-LNLVRMQKAMAKKEKKKKKVLSISLSGKKVV 373 Query: 970 LNKDETAESESDQ 1008 +++ E + SD+ Sbjct: 374 VDQKEASSESSDE 386
>P36119:YK03_YEAST Uncharacterized protein YKR023W - Saccharomyces cerevisiae (Baker's| yeast) Length = 530 Score = 46.6 bits (109), Expect = 3e-04 Identities = 44/237 (18%), Positives = 87/237 (36%), Gaps = 20/237 (8%) Frame = +1 Query: 274 YLQRRGYTDPSKGAGSSQSSNLQPYLKPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 453 Y+ ++G P K +SS +P ++PS Sbjct: 103 YINKKGDEKPKKLKDEKKSSTTRPTVQPSNQST--------------------------- 135 Query: 454 XXETHVVSKRGPKKKGGKVISLAEAAKGSIVFK-----QGKPCSCQARLH---NLVSNCL 609 +++ + ++ + GK+ SL E + + + K C+CQ H ++ NCL Sbjct: 136 --QSNPIKEKKEHRSKGKLQSLQEIDEAIKMLELRDSGSSKNCNCQGTRHPVFDIAPNCL 193 Query: 610 SCGKIVCEQEG--EGPCSFCGSLVLMEGSTYA----------GLSDVGVPLSDTEVAAEA 753 CGK+VC EG +G C C ++ + L+ LS+ A Sbjct: 194 HCGKVVCVIEGLNKGKCGHCHEQLISDNERTQMVEILNQEKNELNGSSSSLSNASNGANV 253 Query: 754 YAKRLVDYDRNSAARTKVYDDQSDYFEMEGNSWLSSKGKTNLKKVHDEAQDAAEKQK 924 K+ Y S ++ +Q F+ + + + K+ +E +++ K++ Sbjct: 254 PKKKTKTYKITSGMGKNLFAEQDKLFDFIERKRERERKRNEVLKLQEEKEESEAKER 310 Score = 33.1 bits (74), Expect = 3.3 Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 35/170 (20%) Frame = +1 Query: 739 VAAEAYAKRLVDYDRNSAARTKVYDDQSDY-FEMEGNSWLSS--------KGKTNLK--- 882 +AA+ RL+ + SA RTK+ D+ SD+ E W S+ K + NL+ Sbjct: 326 LAAQERLDRLLYFQDTSAERTKIIDNASDFDMNQEVGLWGSARERALALKKQQRNLRKWE 385 Query: 883 KVHDEAQDAAEK--------QKGKVTVT-FDLVGRKVILNKDETAESESDQGIMRPLEQK 1035 KV E EK GKVT+T VI D+ SD+ + L+ Sbjct: 386 KVEKERNGRREKYVVSMNIGSNGKVTMTEVPKDTENVIAGSDDDISDISDEEDISDLKHI 445 Query: 1036 HQVQ-RIQPSPSI-------------REQPVFIETGPVKPRTDRVKQSKK 1143 H ++ I + S+ R++ F VK +D +Q++K Sbjct: 446 HALKSEINTTKSLENLHLQSKAWDYERDKKQFDRPTYVKKNSDTAQQNRK 495
>Q7RTT6:SSX6_HUMAN Protein SSX6 - Homo sapiens (Human)| Length = 188 Score = 36.6 bits (83), Expect = 0.30 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 4/108 (3%) Frame = +1 Query: 748 EAYAKRLVDYDRNSAARTKVYDDQSDYFEMEGNSWLSSKGKTNLKKVHDEAQDAAEKQKG 927 +A+AKR D + S R+K +DD + YF E W K + VH + + A + G Sbjct: 5 DAFAKRPRDDAKASEKRSKAFDDIAKYFSKE--EWEKMKFSEKISCVHMKRKYEAMTKLG 62 Query: 928 KVTVTFDLVGRKVILNKDETAESESDQG----IMRPLEQKHQVQRIQP 1059 VT L R + +S++D+ + RP ++QRI P Sbjct: 63 -FNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIP 109
>Q9W3C0:UTP11_DROME Probable U3 small nucleolar RNA-associated protein 11 - Drosophila| melanogaster (Fruit fly) Length = 237 Score = 34.7 bits (78), Expect = 1.1 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Frame = +1 Query: 766 LVDYDR-NSAARTKVYDDQSDYFEMEGNSWLSSKGKTNLKKVHDEAQDAAEKQKGKVTVT 942 LVD D AA ++ D+ Y E++ WL HD+ ++ EK+K T Sbjct: 122 LVDVDAIKGAANKRIKFDEDGYMELDMGEWLLK---------HDDEEEEEEKKKKSKTTE 172 Query: 943 FDLVGRKVILNKDETAESESDQGIMRPLEQKHQVQRIQPSPSIREQPVFIETGPVKPRT 1119 + + ++ I + + E + GI++ Q+IQ +++ QP ++ +KP T Sbjct: 173 PNPIKQQRINELKKREQRERELGIVQ--------QKIQLKNTLK-QPRLLKPRKIKPGT 222
>P18330:SYI1_PSEFL Isoleucyl-tRNA synthetase 1 - Pseudomonas fluorescens| Length = 943 Score = 34.7 bits (78), Expect = 1.1 Identities = 26/89 (29%), Positives = 37/89 (41%) Frame = +1 Query: 490 KKKGGKVISLAEAAKGSIVFKQGKPCSCQARLHNLVSNCLSCGKIVCEQEGEGPCSFCGS 669 K + G++ +LAE KG VFK KP V+ C CG + E E E + Sbjct: 157 KNEAGEIRALAEIVKGGFVFKGLKP----------VNWCFDCGSALAEAEVEYEDKKSST 206 Query: 670 LVLMEGSTYAGLSDVGVPLSDTEVAAEAY 756 + DV P++D AEA+ Sbjct: 207 I------------DVAFPIADDAKLAEAF 223
>P32609:PEP7_YEAST Vacuolar segregation protein PEP7 - Saccharomyces cerevisiae| (Baker's yeast) Length = 515 Score = 33.9 bits (76), Expect = 1.9 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Frame = +1 Query: 484 GPKKKGGKVISLAEAAKGSI--VFKQGKPC--SCQARLHNLVS--NCLSCGKIVCEQ 636 G +KK V S A+ K S FK+GK C +C L+N + NC CGK+ C + Sbjct: 48 GKQKKARSVDSSAQKLKRSHWEKFKKGKSCCHTCGRTLNNNIGAINCRKCGKLYCRR 104
>Q9H3R0:JHD3C_HUMAN JmjC domain-containing histone demethylation protein 3C - Homo| sapiens (Human) Length = 1056 Score = 33.9 bits (76), Expect = 1.9 Identities = 20/65 (30%), Positives = 36/65 (55%) Frame = +1 Query: 706 SDVGVPLSDTEVAAEAYAKRLVDYDRNSAARTKVYDDQSDYFEMEGNSWLSSKGKTNLKK 885 S+ V L +TE ++E + +SA+R +V + SD+ ++ GNS LS+ ++K Sbjct: 416 SEAAVKLRNTEASSE---------EESSASRMQVEQNLSDHIKLSGNSCLSTSVTEDIKT 466 Query: 886 VHDEA 900 D+A Sbjct: 467 EDDKA 471
>Q46DW1:Y959_METBF UPF0095 protein Mbar_A0959 - Methanosarcina barkeri (strain Fusaro /| DSM 804) Length = 517 Score = 33.1 bits (74), Expect = 3.3 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 4/139 (2%) Frame = +1 Query: 727 SDTEVAAEAYAKRLVDYDRNSAARTKVYDDQSDYFEMEGNSWLSSKGKTNLKKVHDEAQD 906 S ++ A A R+ + + + + D +E E +KGK + K + Sbjct: 291 SKRKIRAPEIAPRITEKKLHKRIKIHRVSSKPDLYEEELPEE-ETKGKASAKAFEKVSVK 349 Query: 907 AAEKQKGKVTVTFDLVGRKVILNKDETAESESDQGIM----RPLEQKHQVQRIQPSPSIR 1074 AAEK V T V + I+ K + + ++ +P E+ ++ ++R Sbjct: 350 AAEKVSEMVPATAGKVKTRSIVAKPQISARKAPAAARVSREKPAEKVPSAVKVSRGEAVR 409 Query: 1075 EQPVFIETGPVKPRTDRVK 1131 P ++T PV P R + Sbjct: 410 VSPAPVKTVPVSPEATRFR 428
>O88271:CFDP1_MOUSE Craniofacial development protein 1 - Mus musculus (Mouse)| Length = 295 Score = 33.1 bits (74), Expect = 3.3 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 6/114 (5%) Frame = +1 Query: 892 DEAQDAAEKQKGKVTVTFDLVGRKVILNKDETAESESDQGIMRPLEQKHQVQRIQPSPSI 1071 DE E +K K+T FD G +V + K+ A S+ + ++ E Sbjct: 148 DELDKPRESEKVKITKVFDFAGEEVRVTKEVDAASKEAKSFLKQTE-------------- 193 Query: 1072 REQPVFIETGPVK--PRTDRVKQ----SKKLGKNGLCLEVTGRVQHDDKDPQSF 1215 RE+P + T P P +K+ S LGK G + ++ D +SF Sbjct: 194 REKPQALVTSPATPLPAGSGIKRASGMSSLLGKIGAKKQKMSTLEKSKLDWESF 247
>P75454:TIG_MYCPN Trigger factor - Mycoplasma pneumoniae| Length = 444 Score = 32.3 bits (72), Expect = 5.6 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = +2 Query: 317 EARSRLTFSLI*SHLLMQQLPKQRNRHVHKKIQHLLLVRVPRVNQMRLRLMLSPREVQK 493 EAR +TF+L+ + + K N+ +H +I+ ++ V P VN + M E QK Sbjct: 364 EARDNVTFALVMKRIADVEKIKVDNKKIHSEIESIIDVEYPFVNAELKKQMFHNMEQQK 422
>Q38874:STM_ARATH Homeobox protein SHOOT MERISTEMLESS - Arabidopsis thaliana (Mouse-ear| cress) Length = 382 Score = 32.0 bits (71), Expect = 7.4 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = -3 Query: 1297 STHSHHLHELDQRNCMRDGHLFSSCQQESSGDPCHHAAPFRLPPGTSHSFRASCSVLPC 1121 ++H HH H+ + DG+ + S Q+SS AP P GT + +S S C Sbjct: 35 TSHQHHGHDHQHQQQEHDGYAYQSHHQQSSSLFLQSLAP---PQGTKNKVASSSSPSSC 90
>Q00799:RBP2_PLAVB Reticulocyte-binding protein 2 precursor - Plasmodium vivax (strain| Belem) Length = 2867 Score = 32.0 bits (71), Expect = 7.4 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Frame = +1 Query: 799 TKVYDDQSDYFEMEGNSWLSSKGKT---NLKKVHDEAQDAAEKQKGKVTVTFD 948 TK YDD + +E N + K + N+KK+H A D +K K ++ + D Sbjct: 315 TKTYDDIVKEYAIEINDFDEKKSISFMDNMKKIHKSAIDTLKKMKAELNTSLD 367
>Q07844:RIX7_YEAST Ribosome biogenesis ATPase RIX7 - Saccharomyces cerevisiae (Baker's| yeast) Length = 837 Score = 31.6 bits (70), Expect = 9.6 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +1 Query: 1111 PRTDRVKQSKKLGKNGLCLEVTGRVQHDDKDPQSFL 1218 P+T+ VK+SKK K G C +++ D P S L Sbjct: 169 PKTEEVKKSKKRSKEGTCKVKRQKIKEDRSPPNSSL 204
>Q75UQ2:CFDP1_RAT Craniofacial development protein 1 - Rattus norvegicus (Rat)| Length = 295 Score = 31.6 bits (70), Expect = 9.6 Identities = 14/48 (29%), Positives = 26/48 (54%) Frame = +1 Query: 892 DEAQDAAEKQKGKVTVTFDLVGRKVILNKDETAESESDQGIMRPLEQK 1035 DE + E +K K+T FD G +V + K+ A S+ + ++ E++ Sbjct: 148 DELEKPKESEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFLKQTEKE 195 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.315 0.133 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 255,389,575 Number of extensions: 5456489 Number of successful extensions: 15659 Number of sequences better than 10.0: 16 Number of HSP's gapped: 15623 Number of HSP's successfully gapped: 19 Length of query: 523 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 405 Effective length of database: 68,319,629 Effective search space: 27669449745 Effective search space used: 27669449745 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
