Clone Information

BLAST Search Result

Clone Name	FLbaf99i16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	P58223:Y4837_ARATH KH domain-containing protein At4g18375 - Arab...	135	7e-31
2	P57722:PCBP3_MOUSE Poly(rC)-binding protein 3 - Mus musculus (Mo...	54	3e-06
3	P57721:PCBP3_HUMAN Poly(rC)-binding protein 3 - Homo sapiens (Hu...	54	3e-06
4	O19048:PCBP1_RABIT Poly(rC)-binding protein 1 - Oryctolagus cuni...	52	7e-06
5	P60335:PCBP1_MOUSE Poly(rC)-binding protein 1 - Mus musculus (Mo...	52	7e-06
6	Q15365:PCBP1_HUMAN Poly(rC)-binding protein 1 - Homo sapiens (Hu...	52	7e-06
7	Q5E9A3:PCBP1_BOVIN Poly(rC)-binding protein 1 - Bos taurus (Bovine)	52	7e-06
8	Q15366:PCBP2_HUMAN Poly(rC)-binding protein 2 - Homo sapiens (Hu...	50	4e-05
9	Q61990:PCBP2_MOUSE Poly(rC)-binding protein 2 - Mus musculus (Mo...	47	4e-04
10	P57724:PCBP4_MOUSE Poly(rC)-binding protein 4 - Mus musculus (Mo...	42	0.008
11	P57723:PCBP4_HUMAN Poly(rC)-binding protein 4 - Homo sapiens (Hu...	42	0.008
12	Q0VCU0:PCBP4_BOVIN Poly(rC)-binding protein 4 - Bos taurus (Bovine)	42	0.008
13	Q9UNW9:NOVA2_HUMAN RNA-binding protein Nova-2 - Homo sapiens (Hu...	39	0.065
14	P61980:HNRPK_RAT Heterogeneous nuclear ribonucleoprotein K - Rat...	39	0.065
15	O19049:HNRPK_RABIT Heterogeneous nuclear ribonucleoprotein K - O...	39	0.065
16	Q5R5H8:HNRPK_PONPY Heterogeneous nuclear ribonucleoprotein K - P...	39	0.065
17	P61979:HNRPK_MOUSE Heterogeneous nuclear ribonucleoprotein K - M...	39	0.065
18	Q4R4M6:HNRPK_MACFA Heterogeneous nuclear ribonucleoprotein K - M...	39	0.065
19	P61978:HNRPK_HUMAN Heterogeneous nuclear ribonucleoprotein K - H...	39	0.065
20	Q5ZIQ3:HNRPK_CHICK Heterogeneous nuclear ribonucleoprotein K - G...	39	0.065
21	Q3T0D0:HNRPK_BOVIN Heterogeneous nuclear ribonucleoprotein K - B...	39	0.065
22	Q2PFW9:NOVA1_MACFA RNA-binding protein Nova-1 - Macaca fascicula...	38	0.15
23	Q80WA4:NOVA1_RAT RNA-binding protein Nova-1 - Rattus norvegicus ...	38	0.19
24	Q91WJ8:FUBP1_MOUSE Far upstream element-binding protein 1 - Mus ...	38	0.19
25	Q96AE4:FUBP1_HUMAN Far upstream element-binding protein 1 - Homo...	38	0.19
26	Q96I24:FUBP3_HUMAN Far upstream element-binding protein 3 - Homo...	37	0.25
27	O00425:IF2B3_HUMAN Insulin-like growth factor 2 mRNA-binding pro...	37	0.32
28	Q9CPN8:IF2B3_MOUSE Insulin-like growth factor 2 mRNA-binding pro...	37	0.42
29	Q9CBA4:HTPX_MYCLE Probable protease htpX homolog - Mycobacterium...	36	0.72
30	P81021:VIGLN_CHICK Vigilin - Gallus gallus (Chicken)	35	1.6
31	Q1RIG0:PNP_RICBR Polyribonucleotide nucleotidyltransferase - Ric...	35	1.6
32	P38151:PBP2_YEAST PAB1-binding protein 2 - Saccharomyces cerevis...	34	2.1
33	Q08CK7:IF2B1_DANRE Insulin-like growth factor 2 mRNA-binding pro...	34	2.1
34	Q4ULK1:PNP_RICFE Polyribonucleotide nucleotidyltransferase - Ric...	34	2.7
35	Q92HV7:PNP_RICCN Polyribonucleotide nucleotidyltransferase - Ric...	34	2.7
36	Q9JKN6:NOVA1_MOUSE RNA-binding protein Nova-1 - Mus musculus (Mo...	33	3.6
37	P51513:NOVA1_HUMAN RNA-binding protein Nova-1 - Homo sapiens (Hu...	33	4.7
38	Q99PF5:FUBP2_RAT Far upstream element-binding protein 2 - Rattus...	33	4.7
39	Q92945:FUBP2_HUMAN Far upstream element-binding protein 2 - Homo...	33	4.7
40	Q9ZD43:PNP_RICPR Polyribonucleotide nucleotidyltransferase - Ric...	33	6.1
41	Q8Y3L4:INLJ_LISMO Internalin-J precursor - Listeria monocytogenes	33	6.1
42	Q71VU0:INLJ_LISMF Internalin-J precursor - Listeria monocytogene...	33	6.1
43	Q0VSJ7:RS3_ALCBS 30S ribosomal protein S3 - Alcanivorax borkumen...	32	8.0
44	Q68WN1:PNP_RICTY Polyribonucleotide nucleotidyltransferase - Ric...	32	8.0
45	P65815:HTPX_MYCTU Probable protease htpX homolog - Mycobacterium...	32	8.0
46	P65816:HTPX_MYCBO Probable protease htpX homolog - Mycobacterium...	32	8.0
47	P39153:YWLC_BACSU Uncharacterized protein ywlC - Bacillus subtilis	32	8.0

>P58223:Y4837_ARATH KH domain-containing protein At4g18375 - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 606
 Score =  135 bits (340), Expect = 7e-31
 Identities = 142/516 (27%), Positives = 228/516 (44%), Gaps = 40/516 (7%)
 Frame = +2

Query: 131  RNSHGKRQSDYSENGGGKRRNPGDDTYAPGPDDTVYRYLCTSRKXXXXXXXXXXXAKQLR 310
            R    + Q + SE+   ++R    D      +  VYR LC                  +R
Sbjct: 4    RKKRKQIQRNNSESNRNQKRRISHDKINRD-ELVVYRILCPIDVVGGVIGKSGKVINAIR 62

Query: 311  SDTQAKIRIGESVPACDERVITIFSSSRETNT----IEDTEDKVCPAQDALFRVHEKLAT 478
             +T+AKI++ + +  C +RVITI+ S +E        +   + +C AQDAL +V++ +  
Sbjct: 63   HNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVA 122

Query: 479  DDGPVN-KENEESLGQVTVRLLVPSDQXXXXXXXXXXXXXXXRSDTGSQIRVLS---NEH 646
             D   N K N +       RLLVP  Q               R  T + ++V+S   ++ 
Sbjct: 123  SDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDP 182

Query: 647  LPLCATSGDELLLITGDPMVVRKALLQVSSRLHG-NP-------SRSQHLLASSLNQPFP 802
              +CA   D +++I+G+P  V++AL  VS+ ++  NP       S SQ + A+S+  P  
Sbjct: 183  SHVCAMEYDNVVVISGEPESVKQALFAVSAIMYKINPRENIPLDSTSQDVPAASVIVPSD 242

Query: 803  VGSR--------------LGSSSTAPVVGITPMVSPYGRYKGDMVGDWPSIYQPRREV-- 934
            + +               L   +  P       VS +  Y        P ++     V  
Sbjct: 243  LSNSVYPQTGFYSNQDHILQQGAGVPSYFNALSVSDFQGYAETAANPVP-VFASSLPVTH 301

Query: 935  -----SSPKEFSLRLLCAAANXXXXXXXXXXXXXQIRQESGAFIKVDSSSA---EDDCII 1090
                 S  +E   ++LC   N             +IR+ SG+ I+V+ S     +D+C+I
Sbjct: 302  GFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVI 361

Query: 1091 TVSAKEFFEDPVSPTIDATVRLQPRCSEKIDAESGEPSYTTRLLVSTSRIGCLIGKGGSI 1270
             V+A E  +D  S  ++A + LQ    E I+ E  E +   +LLVS+  IGC+IGK GS+
Sbjct: 362  IVTATESPDDMKSMAVEAVLLLQ----EYINDEDAE-NVKMQLLVSSKVIGCVIGKSGSV 416

Query: 1271 ITEIRRTSRANIRIISKQDVPKVASDDEEMVLISGDLDFARHALLQITTRLKANFFEREG 1450
            I EIR+ + ANI  ISK          +++V +SG++   R AL+QI  RL      RE 
Sbjct: 417  INEIRKRTNANI-CISK-------GKKDDLVEVSGEVSSVRDALIQIVLRL------RED 462

Query: 1451 ALSGFPPVIPYHPLPASVSDEKYLSRDNKSAGHDYP 1558
             L     V    P PA   +  +LS  + +AG+  P
Sbjct: 463  VLGDKDSVATRKP-PARTDNCSFLS-GSSNAGYTLP 496

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>P57722:PCBP3_MOUSE Poly(rC)-binding protein 3 - Mus musculus (Mouse)|
          Length = 339

 Score = 53.5 bits (127), Expect = 3e-06
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKI------D 1183
            ++R+ESGA I +   +  +  I+T++       P      A   +  +  E I       
Sbjct: 38   KMREESGARINISEGNCPER-IVTITG------PTDAIFKAFAMIAYKFEEDIINSMSNS 90

Query: 1184 AESGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMV 1363
              + +P  T RL+V  S+ G LIGKGGS I EIR ++ A +++        + +  E  V
Sbjct: 91   PATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM----LPNSTERAV 146

Query: 1364 LISGDLDFARHALLQITTRLKANFFEREGALSGFPP---VIPYHPLPAS 1501
             ISG  D    A++Q   ++     E        PP    IPY P PAS
Sbjct: 147  TISGTPD----AIIQCVKQICVVMLES-------PPKGATIPYRPKPAS 184



 Score = 37.4 bits (85), Expect = 0.25
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
 Frame = +2

Query: 299 KQLRSDTQAKIRIGESVPACDERVITIFSSSRETNTIEDTEDKVCPAQDALFRVHEKLAT 478
           K++R ++ A+I I E    C ER++TI   +                 DA+F+    +A 
Sbjct: 37  KKMREESGARINISEG--NCPERIVTITGPT-----------------DAIFKAFAMIAY 77

Query: 479 --DDGPVNKENEE---SLGQVTVRLLVPSDQXXXXXXXXXXXXXXXRSDTGSQIRVLSNE 643
             ++  +N  +     S   VT+RL+VP+ Q               R  TG+Q++V + +
Sbjct: 78  KFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGD 136

Query: 644 HLPLCATSGDELLLITGDPMVVRKALLQV 730
            LP    S +  + I+G P  + + + Q+
Sbjct: 137 MLP---NSTERAVTISGTPDAIIQCVKQI 162



 Score = 37.4 bits (85), Expect = 0.25
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +2

Query: 1187 ESGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVL 1366
            ++  P+ T  L +    IGC+IG+ G+ I EIR+ S A I+I +  +        E  + 
Sbjct: 256  DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE-----GSSERQIT 310

Query: 1367 ISG 1375
            I+G
Sbjct: 311  ITG 313



 Score = 33.9 bits (76), Expect = 2.7
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = +2

Query: 1208 TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLISGDLDF 1387
            T RLL+    +G +IGK G  + ++R  S A I  IS+ + P      E +V I+G  D 
Sbjct: 15   TIRLLMHGKEVGSIIGKKGETVKKMREESGARIN-ISEGNCP------ERIVTITGPTDA 67

Query: 1388 ARHALLQITTRLKANFFE--REGALSGFPPVIPYHPLPAS 1501
               A   I  + + +          +  PPV     +PAS
Sbjct: 68   IFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPAS 107

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>P57721:PCBP3_HUMAN Poly(rC)-binding protein 3 - Homo sapiens (Human)|
          Length = 339

 Score = 53.5 bits (127), Expect = 3e-06
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKI------D 1183
            ++R+ESGA I +   +  +  I+T++       P      A   +  +  E I       
Sbjct: 38   KMREESGARINISEGNCPER-IVTITG------PTDAIFKAFAMIAYKFEEDIINSMSNS 90

Query: 1184 AESGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMV 1363
              + +P  T RL+V  S+ G LIGKGGS I EIR ++ A +++        + +  E  V
Sbjct: 91   PATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM----LPNSTERAV 146

Query: 1364 LISGDLDFARHALLQITTRLKANFFEREGALSGFPP---VIPYHPLPAS 1501
             ISG  D    A++Q   ++     E        PP    IPY P PAS
Sbjct: 147  TISGTPD----AIIQCVKQICVVMLES-------PPKGATIPYRPKPAS 184



 Score = 37.4 bits (85), Expect = 0.25
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
 Frame = +2

Query: 299 KQLRSDTQAKIRIGESVPACDERVITIFSSSRETNTIEDTEDKVCPAQDALFRVHEKLAT 478
           K++R ++ A+I I E    C ER++TI   +                 DA+F+    +A 
Sbjct: 37  KKMREESGARINISEG--NCPERIVTITGPT-----------------DAIFKAFAMIAY 77

Query: 479 --DDGPVNKENEE---SLGQVTVRLLVPSDQXXXXXXXXXXXXXXXRSDTGSQIRVLSNE 643
             ++  +N  +     S   VT+RL+VP+ Q               R  TG+Q++V + +
Sbjct: 78  KFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGD 136

Query: 644 HLPLCATSGDELLLITGDPMVVRKALLQV 730
            LP    S +  + I+G P  + + + Q+
Sbjct: 137 MLP---NSTERAVTISGTPDAIIQCVKQI 162



 Score = 37.4 bits (85), Expect = 0.25
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +2

Query: 1187 ESGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVL 1366
            ++  P+ T  L +    IGC+IG+ G+ I EIR+ S A I+I +  +        E  + 
Sbjct: 256  DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE-----GSSERQIT 310

Query: 1367 ISG 1375
            I+G
Sbjct: 311  ITG 313



 Score = 33.9 bits (76), Expect = 2.7
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
 Frame = +2

Query: 1208 TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLISGDLDF 1387
            T RLL+    +G +IGK G  + ++R  S A I  IS+ + P      E +V I+G  D 
Sbjct: 15   TIRLLMHGKEVGSIIGKKGETVKKMREESGARIN-ISEGNCP------ERIVTITGPTDA 67

Query: 1388 ARHALLQITTRLKANFFE--REGALSGFPPVIPYHPLPAS 1501
               A   I  + + +          +  PPV     +PAS
Sbjct: 68   IFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPAS 107

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>O19048:PCBP1_RABIT Poly(rC)-binding protein 1 - Oryctolagus cuniculus (Rabbit)|
          Length = 356

 Score = 52.4 bits (124), Expect = 7e-06
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 6/188 (3%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKIDAE---- 1189
            +IR+ESGA I +   +  +  IIT++       P +    A   +  +  E I++     
Sbjct: 38   RIREESGARINISEGNCPER-IITLTG------PTNAIFKAFAMIIDKLEEDINSSMTNS 90

Query: 1190 --SGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMV 1363
              +  P  T RL+V  ++ G LIGKGG  I EIR ++ A +++        + +  E  +
Sbjct: 91   TAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM----LPNSTERAI 146

Query: 1364 LISGDLDFARHALLQITTRLKANFFEREGALSGFPPVIPYHPLPASVSDEKYLSRDNKSA 1543
             I+G        + QI   +     +   +  G    IPY P+PAS        +D  S 
Sbjct: 147  TIAGVPQSVTECVKQICLVMLETLSQ---SPQGRVMTIPYQPMPASSPVICAGGQDRCSD 203

Query: 1544 GHDYPYSS 1567
               YP+++
Sbjct: 204  AAGYPHAT 211



 Score = 40.4 bits (93), Expect = 0.029
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 2/173 (1%)
 Frame = +2

Query: 299 KQLRSDTQAKIRIGESVPACDERVITIFSSSRETNTIEDTEDKVCPAQDALFRVHEKLAT 478
           K++R ++ A+I I E    C ER+IT+   +  TN I            A   + +KL  
Sbjct: 37  KRIREESGARINISEG--NCPERIITL---TGPTNAIFK----------AFAMIIDKLEE 81

Query: 479 D-DGPVNKENEESLGQVTVRLLVPSDQXXXXXXXXXXXXXXXRSDTGSQIRVLSNEHLPL 655
           D +  +      S   VT+RL+VP+ Q               R  TG+Q++V + + LP 
Sbjct: 82  DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP- 139

Query: 656 CATSGDELLLITGDPMVVRKALLQVSSRLHGNPSRS-QHLLASSLNQPFPVGS 811
              S +  + I G P  V + + Q+   +    S+S Q  + +   QP P  S
Sbjct: 140 --NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASS 190



 Score = 34.3 bits (77), Expect = 2.1
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = +2

Query: 1208 TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLISGDLDF 1387
            T  L +  + IGC+IG+ G+ I EIR+ S A I+I +      V       V I+G    
Sbjct: 281  THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN-----PVEGSSGRQVTITGSAAS 335

Query: 1388 ARHALLQITTRLKA 1429
               A   I  RL +
Sbjct: 336  ISLAQYLINARLSS 349

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>P60335:PCBP1_MOUSE Poly(rC)-binding protein 1 - Mus musculus (Mouse)|
          Length = 356

 Score = 52.4 bits (124), Expect = 7e-06
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 6/188 (3%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKIDAE---- 1189
            +IR+ESGA I +   +  +  IIT++       P +    A   +  +  E I++     
Sbjct: 38   RIREESGARINISEGNCPER-IITLTG------PTNAIFKAFAMIIDKLEEDINSSMTNS 90

Query: 1190 --SGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMV 1363
              +  P  T RL+V  ++ G LIGKGG  I EIR ++ A +++        + +  E  +
Sbjct: 91   TAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM----LPNSTERAI 146

Query: 1364 LISGDLDFARHALLQITTRLKANFFEREGALSGFPPVIPYHPLPASVSDEKYLSRDNKSA 1543
             I+G        + QI   +     +   +  G    IPY P+PAS        +D  S 
Sbjct: 147  TIAGVPQSVTECVKQICLVMLETLSQ---SPQGRVMTIPYQPMPASSPVICAGGQDRCSD 203

Query: 1544 GHDYPYSS 1567
               YP+++
Sbjct: 204  AAGYPHAT 211



 Score = 40.4 bits (93), Expect = 0.029
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 2/173 (1%)
 Frame = +2

Query: 299 KQLRSDTQAKIRIGESVPACDERVITIFSSSRETNTIEDTEDKVCPAQDALFRVHEKLAT 478
           K++R ++ A+I I E    C ER+IT+   +  TN I            A   + +KL  
Sbjct: 37  KRIREESGARINISEG--NCPERIITL---TGPTNAIFK----------AFAMIIDKLEE 81

Query: 479 D-DGPVNKENEESLGQVTVRLLVPSDQXXXXXXXXXXXXXXXRSDTGSQIRVLSNEHLPL 655
           D +  +      S   VT+RL+VP+ Q               R  TG+Q++V + + LP 
Sbjct: 82  DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP- 139

Query: 656 CATSGDELLLITGDPMVVRKALLQVSSRLHGNPSRS-QHLLASSLNQPFPVGS 811
              S +  + I G P  V + + Q+   +    S+S Q  + +   QP P  S
Sbjct: 140 --NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASS 190



 Score = 34.3 bits (77), Expect = 2.1
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = +2

Query: 1208 TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLISGDLDF 1387
            T  L +  + IGC+IG+ G+ I EIR+ S A I+I +      V       V I+G    
Sbjct: 281  THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN-----PVEGSSGRQVTITGSAAS 335

Query: 1388 ARHALLQITTRLKA 1429
               A   I  RL +
Sbjct: 336  ISLAQYLINARLSS 349

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>Q15365:PCBP1_HUMAN Poly(rC)-binding protein 1 - Homo sapiens (Human)|
          Length = 356

 Score = 52.4 bits (124), Expect = 7e-06
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 6/188 (3%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKIDAE---- 1189
            +IR+ESGA I +   +  +  IIT++       P +    A   +  +  E I++     
Sbjct: 38   RIREESGARINISEGNCPER-IITLTG------PTNAIFKAFAMIIDKLEEDINSSMTNS 90

Query: 1190 --SGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMV 1363
              +  P  T RL+V  ++ G LIGKGG  I EIR ++ A +++        + +  E  +
Sbjct: 91   TAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM----LPNSTERAI 146

Query: 1364 LISGDLDFARHALLQITTRLKANFFEREGALSGFPPVIPYHPLPASVSDEKYLSRDNKSA 1543
             I+G        + QI   +     +   +  G    IPY P+PAS        +D  S 
Sbjct: 147  TIAGVPQSVTECVKQICLVMLETLSQ---SPQGRVMTIPYQPMPASSPVICAGGQDRCSD 203

Query: 1544 GHDYPYSS 1567
               YP+++
Sbjct: 204  AAGYPHAT 211



 Score = 40.4 bits (93), Expect = 0.029
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 2/173 (1%)
 Frame = +2

Query: 299 KQLRSDTQAKIRIGESVPACDERVITIFSSSRETNTIEDTEDKVCPAQDALFRVHEKLAT 478
           K++R ++ A+I I E    C ER+IT+   +  TN I            A   + +KL  
Sbjct: 37  KRIREESGARINISEG--NCPERIITL---TGPTNAIFK----------AFAMIIDKLEE 81

Query: 479 D-DGPVNKENEESLGQVTVRLLVPSDQXXXXXXXXXXXXXXXRSDTGSQIRVLSNEHLPL 655
           D +  +      S   VT+RL+VP+ Q               R  TG+Q++V + + LP 
Sbjct: 82  DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP- 139

Query: 656 CATSGDELLLITGDPMVVRKALLQVSSRLHGNPSRS-QHLLASSLNQPFPVGS 811
              S +  + I G P  V + + Q+   +    S+S Q  + +   QP P  S
Sbjct: 140 --NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASS 190



 Score = 34.3 bits (77), Expect = 2.1
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = +2

Query: 1208 TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLISGDLDF 1387
            T  L +  + IGC+IG+ G+ I EIR+ S A I+I +      V       V I+G    
Sbjct: 281  THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN-----PVEGSSGRQVTITGSAAS 335

Query: 1388 ARHALLQITTRLKA 1429
               A   I  RL +
Sbjct: 336  ISLAQYLINARLSS 349

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>Q5E9A3:PCBP1_BOVIN Poly(rC)-binding protein 1 - Bos taurus (Bovine)|
          Length = 356

 Score = 52.4 bits (124), Expect = 7e-06
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 6/188 (3%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKIDAE---- 1189
            +IR+ESGA I +   +  +  IIT++       P +    A   +  +  E I++     
Sbjct: 38   RIREESGARINISEGNCPER-IITLTG------PTNAIFKAFAMIIDKLEEDINSSMTNS 90

Query: 1190 --SGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMV 1363
              +  P  T RL+V  ++ G LIGKGG  I EIR ++ A +++        + +  E  +
Sbjct: 91   TAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM----LPNSTERAI 146

Query: 1364 LISGDLDFARHALLQITTRLKANFFEREGALSGFPPVIPYHPLPASVSDEKYLSRDNKSA 1543
             I+G        + QI   +     +   +  G    IPY P+PAS        +D  S 
Sbjct: 147  TIAGVPQSVTECVKQICLVMLETLSQ---SPQGRVMTIPYQPMPASSPVICAGGQDRCSD 203

Query: 1544 GHDYPYSS 1567
               YP+++
Sbjct: 204  AAGYPHAT 211



 Score = 40.4 bits (93), Expect = 0.029
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 2/173 (1%)
 Frame = +2

Query: 299 KQLRSDTQAKIRIGESVPACDERVITIFSSSRETNTIEDTEDKVCPAQDALFRVHEKLAT 478
           K++R ++ A+I I E    C ER+IT+   +  TN I            A   + +KL  
Sbjct: 37  KRIREESGARINISEG--NCPERIITL---TGPTNAIFK----------AFAMIIDKLEE 81

Query: 479 D-DGPVNKENEESLGQVTVRLLVPSDQXXXXXXXXXXXXXXXRSDTGSQIRVLSNEHLPL 655
           D +  +      S   VT+RL+VP+ Q               R  TG+Q++V + + LP 
Sbjct: 82  DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP- 139

Query: 656 CATSGDELLLITGDPMVVRKALLQVSSRLHGNPSRS-QHLLASSLNQPFPVGS 811
              S +  + I G P  V + + Q+   +    S+S Q  + +   QP P  S
Sbjct: 140 --NSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASS 190



 Score = 34.3 bits (77), Expect = 2.1
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = +2

Query: 1208 TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLISGDLDF 1387
            T  L +  + IGC+IG+ G+ I EIR+ S A I+I +      V       V I+G    
Sbjct: 281  THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN-----PVEGSSGRQVTITGSAAS 335

Query: 1388 ARHALLQITTRLKA 1429
               A   I  RL +
Sbjct: 336  ISLAQYLINARLSS 349

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>Q15366:PCBP2_HUMAN Poly(rC)-binding protein 2 - Homo sapiens (Human)|
          Length = 365

 Score = 50.1 bits (118), Expect = 4e-05
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 9/186 (4%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKIDAE---- 1189
            ++R+ESGA I +   +  +  IIT++       P +    A   +  +  E I +     
Sbjct: 38   KMREESGARINISEGNCPER-IITLAG------PTNAIFKAFAMIIDKLEEDISSSMTNS 90

Query: 1190 --SGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMV 1363
              +  P  T RL+V  S+ G LIGKGG  I EIR ++ A +++        + +  E  +
Sbjct: 91   TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM----LPNSTERAI 146

Query: 1364 LISGDLDFARHALLQITTRLKANFFEREGALSGFPP---VIPYHPLPASVSDEKYLSRDN 1534
             I+G       ++++   ++     E    LS  PP    IPY P P+S        +D 
Sbjct: 147  TIAG----IPQSIIECVKQICVVMLE---TLSQSPPKGVTIPYRPKPSSSPVIFAGGQDR 199

Query: 1535 KSAGHD 1552
             S G D
Sbjct: 200  YSTGSD 205



 Score = 38.1 bits (87), Expect = 0.15
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
 Frame = +2

Query: 299 KQLRSDTQAKIRIGESVPACDERVITIFSSSRETNTIEDTEDKVCPAQDALFRVHEKLAT 478
           K++R ++ A+I I E    C ER+IT+   +  TN I            A   + +KL  
Sbjct: 37  KKMREESGARINISEG--NCPERIITL---AGPTNAIFK----------AFAMIIDKLEE 81

Query: 479 D-DGPVNKENEESLGQVTVRLLVPSDQXXXXXXXXXXXXXXXRSDTGSQIRVLSNEHLPL 655
           D    +      S   VT+RL+VP+ Q               R  TG+Q++V + + LP 
Sbjct: 82  DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP- 139

Query: 656 CATSGDELLLITGDPMVVRKALLQV 730
              S +  + I G P  + + + Q+
Sbjct: 140 --NSTERAITIAGIPQSIIECVKQI 162



 Score = 34.7 bits (78), Expect = 1.6
 Identities = 26/84 (30%), Positives = 39/84 (46%)
 Frame = +2

Query: 1178 IDAESGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEE 1357
            +DA +   S+   L +    IGC+IG+ G+ I EIR+ S A I+I +      V    + 
Sbjct: 281  LDASAQTTSH--ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN-----PVEGSTDR 333

Query: 1358 MVLISGDLDFARHALLQITTRLKA 1429
             V I+G       A   I  RL +
Sbjct: 334  QVTITGSAASISLAQYLINVRLSS 357

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>Q61990:PCBP2_MOUSE Poly(rC)-binding protein 2 - Mus musculus (Mouse)|
          Length = 362

 Score = 46.6 bits (109), Expect = 4e-04
 Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 9/186 (4%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKIDAE---- 1189
            ++R+ESGA I +   +  +  IIT++       P +    A   +  +  E I +     
Sbjct: 38   KMREESGARINISEGNCPER-IITLAG------PTNAIFKAFAMIIDKLEEDISSSMTNS 90

Query: 1190 --SGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMV 1363
              +  P  T RL+V  S+ G LIGKGG  I EIR ++ A +++        + +  E  +
Sbjct: 91   TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM----LPNSTERAI 146

Query: 1364 LISGDLDFARHALLQITTRLKANFFEREGALSGFPP---VIPYHPLPASVSDEKYLSRDN 1534
             I+G        + QI   +  +           PP    IPY P P+S        +D 
Sbjct: 147  TIAGIPQSIIECVKQICVVMLES-----------PPKGVTIPYRPKPSSSPVIFAGGQDR 195

Query: 1535 KSAGHD 1552
             S G D
Sbjct: 196  YSTGSD 201



 Score = 43.9 bits (102), Expect = 0.003
 Identities = 84/380 (22%), Positives = 139/380 (36%), Gaps = 3/380 (0%)
 Frame = +2

Query: 299  KQLRSDTQAKIRIGESVPACDERVITIFSSSRETNTIEDTEDKVCPAQDALFRVHEKLAT 478
            K++R ++ A+I I E    C ER+IT+   +  TN I            A   + +KL  
Sbjct: 37   KKMREESGARINISEG--NCPERIITL---AGPTNAIFK----------AFAMIIDKLEE 81

Query: 479  D-DGPVNKENEESLGQVTVRLLVPSDQXXXXXXXXXXXXXXXRSDTGSQIRVLSNEHLPL 655
            D    +      S   VT+RL+VP+ Q               R  TG+Q++V + + LP 
Sbjct: 82   DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP- 139

Query: 656  CATSGDELLLITGDPMVVRKALLQVSSRLHGNPSRSQHLLASSLNQPFPVGSRLGSS--S 829
               S +  + I G P  + + + Q+   +  +P +   +         PV    G    S
Sbjct: 140  --NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYS 197

Query: 830  TAPVVGITPMVSPYGRYKGDMVGDWPSIYQPRREVSSPKEFSLRLLCAAANXXXXXXXXX 1009
            T       P  +P      D+ G     Y  + + + P+    +L   A           
Sbjct: 198  TGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQ--------- 248

Query: 1010 XXXXQIRQESGAFIKVDSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKIDAE 1189
                 +   +  F  ++SSS E         K ++                     +DA 
Sbjct: 249  QSHFPMTHGNTGFSGIESSSPE--------VKGYWAG-------------------LDAS 281

Query: 1190 SGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLI 1369
            +   S+   L +    IGC+IG+ G+ I EIR+ S A I+I +      V    +  V I
Sbjct: 282  AQTTSH--ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN-----PVEGSTDRQVTI 334

Query: 1370 SGDLDFARHALLQITTRLKA 1429
            +G       A   I  RL +
Sbjct: 335  TGSAASISLAQYLINVRLSS 354

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>P57724:PCBP4_MOUSE Poly(rC)-binding protein 4 - Mus musculus (Mouse)|
          Length = 403

 Score = 42.4 bits (98), Expect = 0.008
 Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 5/161 (3%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSA-EDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKIDAES-G 1195
            +IR++S A I +   S  E    IT S    F    + ++ A    +  C+   +  S  
Sbjct: 42   RIREQSSARITISEGSCPERITTITGSTAAVFH---AVSMIAFKLDEDLCAAPANGGSVS 98

Query: 1196 EPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLISG 1375
             P  T RL++  S+ G LIGK G+ I EIR T+ A +++        + +  E  V +SG
Sbjct: 99   RPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAG----DLLPNSTERAVTVSG 154

Query: 1376 DLDFARHALLQITTRLKANFFEREGALSGFPP---VIPYHP 1489
              D    A++    ++ A   E        PP    IPYHP
Sbjct: 155  VPD----AIILCVRQICAVILES-------PPKGATIPYHP 184



 Score = 35.0 bits (79), Expect = 1.2
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = +2

Query: 1196 EPSYTT---RLLVSTSRIGCLIGKGGSIITEIRRTSRANIRI 1312
            +PS  T     LV    IGC+IG+ GS I+EIR+ S A+I+I
Sbjct: 236  DPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI 277

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>P57723:PCBP4_HUMAN Poly(rC)-binding protein 4 - Homo sapiens (Human)|
          Length = 403

 Score = 42.4 bits (98), Expect = 0.008
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSA-EDDCIITVSAKEFFE--DPVSPTIDATVRLQPRCSEKIDAES 1192
            +IR++S A I +   S  E    IT S    F     ++  +D  +   P     +    
Sbjct: 42   RIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVS--- 98

Query: 1193 GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLIS 1372
              P  T RL++  S+ G LIGK G+ I EIR T+ A +++        + +  E  V +S
Sbjct: 99   -RPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAG----DLLPNSTERAVTVS 153

Query: 1373 GDLDFARHALLQITTRLKANFFEREGALSGFPP---VIPYHP 1489
            G  D    A++    ++ A   E        PP    IPYHP
Sbjct: 154  GVPD----AIILCVRQICAVILES-------PPKGATIPYHP 184



 Score = 36.2 bits (82), Expect = 0.55
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +2

Query: 1187 ESGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRI 1312
            + G  + +   LV    IGC+IG+ GS I+EIR+ S A+I+I
Sbjct: 236  DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI 277

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>Q0VCU0:PCBP4_BOVIN Poly(rC)-binding protein 4 - Bos taurus (Bovine)|
          Length = 403

 Score = 42.4 bits (98), Expect = 0.008
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSA-EDDCIITVSAKEFFE--DPVSPTIDATVRLQPRCSEKIDAES 1192
            +IR++S A I +   S  E    IT S    F     ++  +D  +   P     +    
Sbjct: 42   RIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVS--- 98

Query: 1193 GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLIS 1372
              P  T RL++  S+ G LIGK G+ I EIR T+ A +++        + +  E  V +S
Sbjct: 99   -RPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAG----DLLPNSTERAVTVS 153

Query: 1373 GDLDFARHALLQITTRLKANFFEREGALSGFPP---VIPYHP 1489
            G  D    A++    ++ A   E        PP    IPYHP
Sbjct: 154  GVPD----AIILCVRQICAVILES-------PPKGATIPYHP 184



 Score = 35.0 bits (79), Expect = 1.2
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = +2

Query: 1196 EPSYTT---RLLVSTSRIGCLIGKGGSIITEIRRTSRANIRI 1312
            +PS  T     LV    IGC+IG+ GS I+EIR+ S A+I+I
Sbjct: 236  DPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI 277

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>Q9UNW9:NOVA2_HUMAN RNA-binding protein Nova-2 - Homo sapiens (Human)|
          Length = 492

 Score = 39.3 bits (90), Expect = 0.065
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 15/150 (10%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSS------SAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKID 1183
            Q+++E+GA IK+  S      + E  C++  +A+    + V   I   VR  P+   K +
Sbjct: 57   QLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEAL--NAVHSFIAEKVREIPQAMTKPE 114

Query: 1184 AESGEPSYTT---------RLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPK 1336
              +     TT         +L+V  S  G +IGKGG+ +  +   S A +++  K   P+
Sbjct: 115  VVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK---PE 171

Query: 1337 VASDDEEMVLISGDLDFARHALLQITTRLK 1426
              +  E +V +SG+ +    A+  I  +++
Sbjct: 172  GINLQERVVTVSGEPEQVHKAVSAIVQKVQ 201



 Score = 32.3 bits (72), Expect = 8.0
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 1196 EPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQD 1327
            E  Y  ++L+ +   G +IGKGG  I ++++ + A I++   +D
Sbjct: 30   EGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 73

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>P61980:HNRPK_RAT Heterogeneous nuclear ribonucleoprotein K - Rattus norvegicus (Rat)|
          Length = 463

 Score = 39.3 bits (90), Expect = 0.065
 Identities = 26/78 (33%), Positives = 41/78 (52%)
 Frame = +2

Query: 1193 GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLIS 1372
            G P  TT++ +     G +IGKGG  I +IR  S A+I+I    D P   S+D  ++ I+
Sbjct: 384  GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGSED-RIITIT 438

Query: 1373 GDLDFARHALLQITTRLK 1426
            G  D  ++A   +   +K
Sbjct: 439  GTQDQIQNAQYLLQNSVK 456

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>O19049:HNRPK_RABIT Heterogeneous nuclear ribonucleoprotein K - Oryctolagus cuniculus|
            (Rabbit)
          Length = 463

 Score = 39.3 bits (90), Expect = 0.065
 Identities = 26/78 (33%), Positives = 41/78 (52%)
 Frame = +2

Query: 1193 GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLIS 1372
            G P  TT++ +     G +IGKGG  I +IR  S A+I+I    D P   S+D  ++ I+
Sbjct: 384  GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGSED-RIITIT 438

Query: 1373 GDLDFARHALLQITTRLK 1426
            G  D  ++A   +   +K
Sbjct: 439  GTQDQIQNAQYLLQNSVK 456

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>Q5R5H8:HNRPK_PONPY Heterogeneous nuclear ribonucleoprotein K - Pongo pygmaeus|
            (Orangutan)
          Length = 464

 Score = 39.3 bits (90), Expect = 0.065
 Identities = 26/78 (33%), Positives = 41/78 (52%)
 Frame = +2

Query: 1193 GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLIS 1372
            G P  TT++ +     G +IGKGG  I +IR  S A+I+I    D P   S+D  ++ I+
Sbjct: 384  GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGSED-RIITIT 438

Query: 1373 GDLDFARHALLQITTRLK 1426
            G  D  ++A   +   +K
Sbjct: 439  GTQDQIQNAQYLLQNSVK 456

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>P61979:HNRPK_MOUSE Heterogeneous nuclear ribonucleoprotein K - Mus musculus (Mouse)|
          Length = 463

 Score = 39.3 bits (90), Expect = 0.065
 Identities = 26/78 (33%), Positives = 41/78 (52%)
 Frame = +2

Query: 1193 GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLIS 1372
            G P  TT++ +     G +IGKGG  I +IR  S A+I+I    D P   S+D  ++ I+
Sbjct: 384  GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGSED-RIITIT 438

Query: 1373 GDLDFARHALLQITTRLK 1426
            G  D  ++A   +   +K
Sbjct: 439  GTQDQIQNAQYLLQNSVK 456

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>Q4R4M6:HNRPK_MACFA Heterogeneous nuclear ribonucleoprotein K - Macaca fascicularis (Crab|
            eating macaque) (Cynomolgus monkey)
          Length = 464

 Score = 39.3 bits (90), Expect = 0.065
 Identities = 26/78 (33%), Positives = 41/78 (52%)
 Frame = +2

Query: 1193 GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLIS 1372
            G P  TT++ +     G +IGKGG  I +IR  S A+I+I    D P   S+D  ++ I+
Sbjct: 384  GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGSED-RIITIT 438

Query: 1373 GDLDFARHALLQITTRLK 1426
            G  D  ++A   +   +K
Sbjct: 439  GTQDQIQNAQYLLQNSVK 456

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>P61978:HNRPK_HUMAN Heterogeneous nuclear ribonucleoprotein K - Homo sapiens (Human)|
          Length = 463

 Score = 39.3 bits (90), Expect = 0.065
 Identities = 26/78 (33%), Positives = 41/78 (52%)
 Frame = +2

Query: 1193 GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLIS 1372
            G P  TT++ +     G +IGKGG  I +IR  S A+I+I    D P   S+D  ++ I+
Sbjct: 384  GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGSED-RIITIT 438

Query: 1373 GDLDFARHALLQITTRLK 1426
            G  D  ++A   +   +K
Sbjct: 439  GTQDQIQNAQYLLQNSVK 456

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>Q5ZIQ3:HNRPK_CHICK Heterogeneous nuclear ribonucleoprotein K - Gallus gallus (Chicken)|
          Length = 427

 Score = 39.3 bits (90), Expect = 0.065
 Identities = 26/78 (33%), Positives = 41/78 (52%)
 Frame = +2

Query: 1193 GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLIS 1372
            G P  TT++ +     G +IGKGG  I +IR  S A+I+I    D P   S+D  ++ I+
Sbjct: 348  GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGSED-RIITIT 402

Query: 1373 GDLDFARHALLQITTRLK 1426
            G  D  ++A   +   +K
Sbjct: 403  GTQDQIQNAQYLLQNSVK 420

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>Q3T0D0:HNRPK_BOVIN Heterogeneous nuclear ribonucleoprotein K - Bos taurus (Bovine)|
          Length = 464

 Score = 39.3 bits (90), Expect = 0.065
 Identities = 26/78 (33%), Positives = 41/78 (52%)
 Frame = +2

Query: 1193 GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLIS 1372
            G P  TT++ +     G +IGKGG  I +IR  S A+I+I    D P   S+D  ++ I+
Sbjct: 384  GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGSED-RIITIT 438

Query: 1373 GDLDFARHALLQITTRLK 1426
            G  D  ++A   +   +K
Sbjct: 439  GTQDQIQNAQYLLQNSVK 456

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>Q2PFW9:NOVA1_MACFA RNA-binding protein Nova-1 - Macaca fascicularis (Crab eating|
            macaque) (Cynomolgus monkey)
          Length = 483

 Score = 38.1 bits (87), Expect = 0.15
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 15/150 (10%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSS------SAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKID 1183
            Q+++E+GA IK+  S      + E  C+I  + +    + V   I   +R  P+   K +
Sbjct: 74   QLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEAL--NAVHGFIAEKIREMPQNVAKTE 131

Query: 1184 AESGEPSYTT---------RLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPK 1336
              S     TT         +++V  S  G +IGKGG+ +  I   S A +++  K D   
Sbjct: 132  PVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN 191

Query: 1337 VASDDEEMVLISGDLDFARHALLQITTRLK 1426
            +    E +V +SG+ +  R A+  I  +++
Sbjct: 192  L---QERVVTVSGEPEQNRKAVELIIQKIQ 218



 Score = 32.3 bits (72), Expect = 8.0
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +2

Query: 1205 YTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLISGDLD 1384
            Y  ++L+ +   G +IGKGG  I ++++ + A I++   +D        E + LI G ++
Sbjct: 50   YFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF--YPGTTERVCLIQGTVE 107

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>Q80WA4:NOVA1_RAT RNA-binding protein Nova-1 - Rattus norvegicus (Rat)|
          Length = 474

 Score = 37.7 bits (86), Expect = 0.19
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 15/150 (10%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSS------SAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKID 1183
            Q+++E+GA IK+  S      + E  C+I  + +    + V   I   +R  P+   K +
Sbjct: 73   QLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEAL--NAVHGFIAEKIREMPQNVAKTE 130

Query: 1184 AESGEPSYTT---------RLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPK 1336
              S     TT         +++V  S  G +IGKGG+ +  I   S A +++  K D   
Sbjct: 131  PVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN 190

Query: 1337 VASDDEEMVLISGDLDFARHALLQITTRLK 1426
            +    E +V +SG+ +  R A+  I  +++
Sbjct: 191  L---QERVVTVSGEPEQNRKAVELIIQKIQ 217



 Score = 32.7 bits (73), Expect = 6.1
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +2

Query: 1205 YTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLISGDLD 1384
            Y  ++L+ +   G +IGKGG  I ++++ + A I++   +D        E + LI G ++
Sbjct: 49   YFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF--YPGTTERVCLIQGTIE 106

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>Q91WJ8:FUBP1_MOUSE Far upstream element-binding protein 1 - Mus musculus (Mouse)|
          Length = 651

 Score = 37.7 bits (86), Expect = 0.19
 Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSA---EDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEK----- 1177
            +I+QESG  I++   S    E  C++T + +         ++ +  RL  +  EK     
Sbjct: 121  RIQQESGCKIQIAPDSGGLPERSCMLTGTPE---------SVQSAKRLLDQIVEKGRPAP 171

Query: 1178 -IDAESGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDE 1354
                  G  +    +++  S+ G +IGKGG  I +++   RA ++++  QD P+    D+
Sbjct: 172  GFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQ--ERAGVKMVMIQDGPQNTGADK 229

Query: 1355 EMVLISGD 1378
             +  I+GD
Sbjct: 230  PL-RITGD 236

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>Q96AE4:FUBP1_HUMAN Far upstream element-binding protein 1 - Homo sapiens (Human)|
          Length = 644

 Score = 37.7 bits (86), Expect = 0.19
 Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSA---EDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEK----- 1177
            +I+QESG  I++   S    E  C++T + +         ++ +  RL  +  EK     
Sbjct: 125  RIQQESGCKIQIAPDSGGLPERSCMLTGTPE---------SVQSAKRLLDQIVEKGRPAP 175

Query: 1178 -IDAESGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDE 1354
                  G  +    +++  S+ G +IGKGG  I +++   RA ++++  QD P+    D+
Sbjct: 176  GFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQ--ERAGVKMVMIQDGPQNTGADK 233

Query: 1355 EMVLISGD 1378
             +  I+GD
Sbjct: 234  PL-RITGD 240



 Score = 32.3 bits (72), Expect = 8.0
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +2

Query: 1220 LVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLISG---DLDFA 1390
            +V T + G +IGKGG  I  I + S A I +  +++ P  A  + ++  I G    +D+A
Sbjct: 382  IVPTGKTGLIIGKGGETIKSISQQSGARIEL--QRNPPPNADPNMKLFTIRGTPQQIDYA 439

Query: 1391 RHAL 1402
            R  +
Sbjct: 440  RQLI 443

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>Q96I24:FUBP3_HUMAN Far upstream element-binding protein 3 - Homo sapiens (Human)|
          Length = 572

 Score = 37.4 bits (85), Expect = 0.25
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSA---EDDCIITVSAKEFFEDP--VSPTIDATVRLQPRCSEKIDA 1186
            +I+ ESG  I++ S S+   E  C++T + +   +    +   +D   R  P     ID+
Sbjct: 102  RIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRC-RNGPGFHNDIDS 160

Query: 1187 ESGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVL 1366
             S        +L+  S++G +IG+GG  I +++   R  ++++  QD P     D+ +  
Sbjct: 161  NST----IQEILIPASKVGLVIGRGGETIKQLQ--ERTGVKMVMIQDGPLPTGADKPL-R 213

Query: 1367 ISGD---LDFARHALLQI 1411
            I+GD   +  AR  +L+I
Sbjct: 214  ITGDAFKVQQAREMVLEI 231

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>O00425:IF2B3_HUMAN Insulin-like growth factor 2 mRNA-binding protein 3 - Homo sapiens|
            (Human)
          Length = 579

 Score = 37.0 bits (84), Expect = 0.32
 Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKIDAES--- 1192
            Q+ + +GA IK+  + A D  +  V         ++   +A  + Q R   KI  E+   
Sbjct: 430  QLSRFAGASIKIAPAEAPDAKVRMVI--------ITGPPEAQFKAQGRIYGKIKEENFVS 481

Query: 1193 --GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVL 1366
               E      + V +   G +IGKGG  + E++  S A + ++ +   P    +D+ +V 
Sbjct: 482  PKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTPD--ENDQVVVK 538

Query: 1367 ISGDL---DFARHALLQITTRLKANFFEREGALSGFPP 1471
            I+G       A+  + +I T++K +  +++ AL   PP
Sbjct: 539  ITGHFYACQVAQRKIQEILTQVKQH--QQQKALQSGPP 574

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>Q9CPN8:IF2B3_MOUSE Insulin-like growth factor 2 mRNA-binding protein 3 - Mus musculus|
            (Mouse)
          Length = 579

 Score = 36.6 bits (83), Expect = 0.42
 Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKIDAES--- 1192
            Q+ + +GA IK+  + A D  +  V         ++   +A  + Q R   KI  E+   
Sbjct: 430  QLSRFAGASIKIAPAEAPDAKVRMVI--------ITGPPEAQFKAQGRIYGKIKEENFVS 481

Query: 1193 --GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVL 1366
               E      + V +   G +IGKGG  + E++  S A + ++ +   P    +D+ +V 
Sbjct: 482  PKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQSLSSAEV-VVPRDQTPD--ENDQVVVK 538

Query: 1367 ISGDL---DFARHALLQITTRLKANFFEREGALSGFPP 1471
            I+G       A+  + +I T++K +  +++ AL   PP
Sbjct: 539  ITGHFYACQVAQRKIQEILTQVKQH--QQQKALQSGPP 574

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>Q9CBA4:HTPX_MYCLE Probable protease htpX homolog - Mycobacterium leprae|
          Length = 287

 Score = 35.8 bits (81), Expect = 0.72
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
 Frame = +2

Query: 683 LITGDPMVVRKALLQVSSRLHGNPSRSQHLLASS----LNQPFPVGSRLGS-SSTAPVV 844
           ++TGDP+ +  AL ++SS +   P   +  LAS     +  PF VG R+GS  ST P +
Sbjct: 215 MLTGDPLALASALRKISSGVQAAPLPPEPQLASQAHLMIANPFRVGDRIGSLFSTHPPI 273

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>P81021:VIGLN_CHICK Vigilin - Gallus gallus (Chicken)|
          Length = 1270

 Score = 34.7 bits (78), Expect = 1.6
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
 Frame = +2

Query: 1127 SPTIDATVRLQPRCSEKIDA-------ESGEPSYTTRLLVSTSRIGCLIGKGGSIITEIR 1285
            S +   T+R QPR   K  +       E    SYT  L         LIGKGG  I ++R
Sbjct: 695  SGSATVTIRAQPRTWRKPRSSCCTWAEEKQTKSYTVDLRAKPEYHKFLIGKGGGNIRKVR 754

Query: 1286 RTSRANIRIISKQDVPKVASDDEEMVLISGDLDFARHALLQITTRLK 1426
              + A I   + +D       D+E++ I G  +  + A  ++   +K
Sbjct: 755  DNTGARIIFPTSED------KDQELITIMGTEEAVKEAQKELEALIK 795

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>Q1RIG0:PNP_RICBR Polyribonucleotide nucleotidyltransferase - Rickettsia bellii (strain|
            RML369-C)
          Length = 744

 Score = 34.7 bits (78), Expect = 1.6
 Identities = 21/51 (41%), Positives = 27/51 (52%)
 Frame = +2

Query: 1208 TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEM 1360
            TT L V   +I  +IG GG +I EI  TS A I I     V   ASD +++
Sbjct: 556  TTTLKVDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSIYASDKDKL 606

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>P38151:PBP2_YEAST PAB1-binding protein 2 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 413

 Score = 34.3 bits (77), Expect = 2.1
 Identities = 36/174 (20%), Positives = 65/174 (37%)
 Frame = +2

Query: 221 PDDTVYRYLCTSRKXXXXXXXXXXXAKQLRSDTQAKIRIGESVPACDERVITIFSSSRET 400
           P D   R LC  +              +++S+T A+I I  ++    ER++         
Sbjct: 64  PSDVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIV--------- 114

Query: 401 NTIEDTEDKVCPAQDALFRVHEKLATDDGPVNKENEESLGQVTVRLLVPSDQXXXXXXXX 580
             +  T D V  A   + R    L  + G  N++N E + ++++ LL+P           
Sbjct: 115 -YVRGTCDDVAKAYGMIVRA---LLEEHG--NEDNGEDI-EISINLLIPHHLMGCIIGKR 167

Query: 581 XXXXXXXRSDTGSQIRVLSNEHLPLCATSGDELLLITGDPMVVRKALLQVSSRL 742
                     + +++    N+ L     S D +L I G P  +  A   +S  L
Sbjct: 168 GSRLREIEDLSAAKLFASPNQLL----LSNDRILTINGVPDAIHIATFYISQTL 217

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>Q08CK7:IF2B1_DANRE Insulin-like growth factor 2 mRNA-binding protein 1 - Danio rerio|
            (Zebrafish) (Brachydanio rerio)
          Length = 598

 Score = 34.3 bits (77), Expect = 2.1
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
 Frame = +2

Query: 1022 QIRQESGAFIKVDSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQPRCSEKIDAES--- 1192
            Q+ + +GA IK+  + A D  +  V         V+   +A  + Q R   K+  E+   
Sbjct: 432  QLSRFAGASIKIAPAEAPDSKMRMVI--------VTGPPEAQFKAQGRIYGKLKEENFFG 483

Query: 1193 --GEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVL 1366
               E    T + V+ +  G +IGKGG  + E++  + A + ++ ++  P     D+ +V 
Sbjct: 484  PKEEVKLETHIKVAAAAAGRVIGKGGKTVNELQNLTAAEV-VVPREQTPD--EHDQVIVK 540

Query: 1367 ISGDL---DFARHALLQITTRLKANFFEREGALSGFP 1468
            I G       A+  +  I T++K    +++G   G P
Sbjct: 541  IIGHFYASQLAQRKIRDILTQVKQ---QQKGGGMGTP 574

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>Q4ULK1:PNP_RICFE Polyribonucleotide nucleotidyltransferase - Rickettsia felis|
            (Rickettsia azadi)
          Length = 747

 Score = 33.9 bits (76), Expect = 2.7
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +2

Query: 1208 TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEM 1360
            TT + +   +I  +IG GG +I EI  TS A I I     V   ASD +++
Sbjct: 556  TTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGSVSVYASDRDKL 606

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>Q92HV7:PNP_RICCN Polyribonucleotide nucleotidyltransferase - Rickettsia conorii|
          Length = 749

 Score = 33.9 bits (76), Expect = 2.7
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +2

Query: 1208 TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEM 1360
            TT + +   +I  +IG GG II EI  TS A I I     V   ASD +++
Sbjct: 556  TTTIKIDKDKIRDIIGPGGKIIKEICETSGAKIDISDDGTVSVYASDRDKL 606

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>Q9JKN6:NOVA1_MOUSE RNA-binding protein Nova-1 - Mus musculus (Mouse)|
          Length = 507

 Score = 33.5 bits (75), Expect = 3.6
 Identities = 25/102 (24%), Positives = 47/102 (46%)
 Frame = +2

Query: 1121 PVSPTIDATVRLQPRCSEKIDAESGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRA 1300
            P SPT   +    P  + + +          +++V  S  G +IGKGG+ +  I   S A
Sbjct: 152  PSSPTTTKSSPSDPMTTSRANQ--------VKIIVPNSTAGLIIGKGGATVKAIMEQSGA 203

Query: 1301 NIRIISKQDVPKVASDDEEMVLISGDLDFARHALLQITTRLK 1426
             +++  K D   +    E +V +SG+ +  R A+  I  +++
Sbjct: 204  WVQLSQKPDGINL---QERVVTVSGEPEQNRKAVELIIQKIQ 242



 Score = 32.7 bits (73), Expect = 6.1
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +2

Query: 1205 YTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLISGDLD 1384
            Y  ++L+ +   G +IGKGG  I ++++ + A I++   +D        E + LI G ++
Sbjct: 50   YFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF--YPGTTERVCLIQGTIE 107

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>P51513:NOVA1_HUMAN RNA-binding protein Nova-1 - Homo sapiens (Human)|
          Length = 510

 Score = 33.1 bits (74), Expect = 4.7
 Identities = 24/102 (23%), Positives = 47/102 (46%)
 Frame = +2

Query: 1121 PVSPTIDATVRLQPRCSEKIDAESGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRA 1300
            P SPT   +    P  + + +          +++V  S  G +IGKGG+ +  +   S A
Sbjct: 155  PSSPTTTKSSPSDPMTTSRANQ--------VKIIVPNSTAGLIIGKGGATVKAVMEQSGA 206

Query: 1301 NIRIISKQDVPKVASDDEEMVLISGDLDFARHALLQITTRLK 1426
             +++  K D   +    E +V +SG+ +  R A+  I  +++
Sbjct: 207  WVQLSQKPDGINL---QERVVTVSGEPEQNRKAVELIIQKIQ 245

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>Q99PF5:FUBP2_RAT Far upstream element-binding protein 2 - Rattus norvegicus (Rat)|
          Length = 721

 Score = 33.1 bits (74), Expect = 4.7
 Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
 Frame = +2

Query: 1022 QIRQESGAFIKV--DSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQ--PRCSEKIDAE 1189
            +I+Q+SG  +++  DS    +  +    A E  +       D   R +  P      +A 
Sbjct: 170  KIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNAN 229

Query: 1190 SGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLI 1369
             G+      +++   + G +IGKGG  I +++   RA +++I  QD  +  + D+ + +I
Sbjct: 230  GGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQ--ERAGVKMILIQDGSQNTNVDKPLRII 287

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>Q92945:FUBP2_HUMAN Far upstream element-binding protein 2 - Homo sapiens (Human)|
          Length = 707

 Score = 33.1 bits (74), Expect = 4.7
 Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
 Frame = +2

Query: 1022 QIRQESGAFIKV--DSSSAEDDCIITVSAKEFFEDPVSPTIDATVRLQ--PRCSEKIDAE 1189
            +I+Q+SG  +++  DS    +  +    A E  +       D   R +  P      +A 
Sbjct: 169  KIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNAN 228

Query: 1190 SGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEMVLI 1369
             G+      +++   + G +IGKGG  I +++   RA +++I  QD  +  + D+ + +I
Sbjct: 229  GGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQ--ERAGVKMILIQDGSQNTNVDKPLRII 286

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>Q9ZD43:PNP_RICPR Polyribonucleotide nucleotidyltransferase - Rickettsia prowazekii|
          Length = 745

 Score = 32.7 bits (73), Expect = 6.1
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = +2

Query: 1199 PSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEM 1360
            PS TT + +   +I  +IG GG II EI  TS A I I     V   ASD +++
Sbjct: 554  PSSTT-VKIDKDKIKDIIGPGGKIIKEICETSNAKIDISDDGTVSIYASDRDKI 606

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>Q8Y3L4:INLJ_LISMO Internalin-J precursor - Listeria monocytogenes|
          Length = 851

 Score = 32.7 bits (73), Expect = 6.1
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -3

Query: 352 RDTLTNPNFSLSIAPELLGNFSTPPNYTPYFPRRAEVAIDSVVW 221
           ++TLTN + +++++P+LL  F  P N  P      + A +++ W
Sbjct: 429 KETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITW 472

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>Q71VU0:INLJ_LISMF Internalin-J precursor - Listeria monocytogenes serotype 4b (strain|
           F2365)
          Length = 916

 Score = 32.7 bits (73), Expect = 6.1
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -3

Query: 352 RDTLTNPNFSLSIAPELLGNFSTPPNYTPYFPRRAEVAIDSVVW 221
           ++TLTN + +++++P+LL  F  P N  P      + A +++ W
Sbjct: 429 KETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITW 472

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>Q0VSJ7:RS3_ALCBS 30S ribosomal protein S3 - Alcanivorax borkumensis (strain SK2 / ATCC|
            700651 / DSM 11573)
          Length = 230

 Score = 32.3 bits (72), Expect = 8.0
 Identities = 20/77 (25%), Positives = 38/77 (49%)
 Frame = +2

Query: 1151 RLQPRCSEKIDAESGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDV 1330
            RL+     +I  E   PS   R+ ++T+R G +IGK G  +  +RR   A + +    ++
Sbjct: 46   RLKSASVSRIKIE--RPSENVRITIATARPGIVIGKKGEDVERLRRDVAAKMGVPVHINI 103

Query: 1331 PKVASDDEEMVLISGDL 1381
             +V   D +  L+  ++
Sbjct: 104  EEVRKPDLDARLVGDNV 120

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>Q68WN1:PNP_RICTY Polyribonucleotide nucleotidyltransferase - Rickettsia typhi|
          Length = 745

 Score = 32.3 bits (72), Expect = 8.0
 Identities = 21/54 (38%), Positives = 29/54 (53%)
 Frame = +2

Query: 1199 PSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRIISKQDVPKVASDDEEM 1360
            PS TT + +   +I  +IG GG II EI  TS A I I     V   A+D +++
Sbjct: 554  PSSTT-IKIDKDKIKDIIGPGGKIIKEICETSNAKIDISDDGTVSVYAADRDKI 606

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>P65815:HTPX_MYCTU Probable protease htpX homolog - Mycobacterium tuberculosis|
          Length = 286

 Score = 32.3 bits (72), Expect = 8.0
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +2

Query: 683 LITGDPMVVRKALLQVSSRLHGNPSRSQHLLASS----LNQPFPVGSRLGS-SSTAPVV 844
           ++TGDP+ +  AL ++S  +   P   +  LAS     +  PF  G R+GS  ST P +
Sbjct: 215 VLTGDPLALASALRKISGGVQAAPLPPEPQLASQAHLMIANPFRAGERIGSLFSTHPPI 273

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>P65816:HTPX_MYCBO Probable protease htpX homolog - Mycobacterium bovis|
          Length = 286

 Score = 32.3 bits (72), Expect = 8.0
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +2

Query: 683 LITGDPMVVRKALLQVSSRLHGNPSRSQHLLASS----LNQPFPVGSRLGS-SSTAPVV 844
           ++TGDP+ +  AL ++S  +   P   +  LAS     +  PF  G R+GS  ST P +
Sbjct: 215 VLTGDPLALASALRKISGGVQAAPLPPEPQLASQAHLMIANPFRAGERIGSLFSTHPPI 273

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>P39153:YWLC_BACSU Uncharacterized protein ywlC - Bacillus subtilis|
          Length = 346

 Score = 32.3 bits (72), Expect = 8.0
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 6/135 (4%)
 Frame = -1

Query: 1476 ITGGKPDKAPSLSKKL---AFSLVVICKRACLAKSRSPLIRTISSSSDATFGTSCFEMIR 1306
            +TG  P+KA +L K+    A +L++ CK   L+   +  + T++             +IR
Sbjct: 82   LTGPAPEKAKTLMKRFWPGALTLILPCKPDALSPRVTAGLETVAIRMPDH--PLALALIR 139

Query: 1305 MFALDVLRISVMIE---PPLPIRHPIRDVDTNKRVVYDGSPDSASIFSLHLGCKRTVASI 1135
               L +   S  +     P    H   D+D     + DG P    + S  L C   +  +
Sbjct: 140  ESGLPIAAPSANLSGKPSPTKAEHVAHDLDGRIAGIVDGGPTGIGVESTVLSCADDIPVL 199

Query: 1134 VGETGSSKNSFAETV 1090
            +   G +K      +
Sbjct: 200  LRPGGITKEQIEAVI 214


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 380,219,358
Number of extensions: 8779606
Number of successful extensions: 22368
Number of sequences better than 10.0: 48
Number of HSP's gapped: 22346
Number of HSP's successfully gapped: 77
Length of query: 697
Length of database: 100,686,439
Length adjustment: 120
Effective length of query: 577
Effective length of database: 67,771,039
Effective search space: 39103889503
Effective search space used: 39103889503
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result