ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf99f20 |
|---|---|
| Clone Library Name | barley_pub |
>Q39211:RPB3A_ARATH DNA-directed RNA polymerase II subunit RPB3-A - Arabidopsis thaliana| (Mouse-ear cress) Length = 319 Score = 432 bits (1111), Expect = e-120 Identities = 220/307 (71%), Positives = 264/307 (85%) Frame = +2 Query: 107 GASYQRFPRVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVL 286 GA+YQRFP+++IRELKD+YAKFEL++TD SMANALRRVMI+EVPTVAIDLVEIE NSSVL Sbjct: 3 GATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 62 Query: 287 NDEFLAHRLGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVT 466 NDEF+AHRLGLIPLTS AMSMRFSRDCDACDGDG CE CSVEF L+++ + QTL+VT Sbjct: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCV-TDQTLDVT 121 Query: 467 STKDLRSTDPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIAR 646 S +DL S DP V PVD +D+ D++ +H+GI+IVKLRRGQEL+LRAIAR Sbjct: 122 S-RDLYSADPTVTPVDF---------TIDSSVSDSS-EHKGIIIVKLRRGQELKLRAIAR 170 Query: 647 KGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQV 826 KGIGKDHAKWSPAATVTFMYEPDI IN+++M+TL+ EEK +ESSPTKVF +DPVT+QV Sbjct: 171 KGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQV 230 Query: 827 TIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLR 1006 +VD EAYTYD+EVIKKAEAMGKPGL+EI+ K+DSF+FTVE+TGA+ A +L++NAI +L+ Sbjct: 231 VVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLK 290 Query: 1007 QKLDAVR 1027 QKLDAVR Sbjct: 291 QKLDAVR 297
>Q39212:RPB3B_ARATH DNA-directed RNA polymerase II subunit RPB3-B - Arabidopsis thaliana| (Mouse-ear cress) Length = 319 Score = 401 bits (1031), Expect = e-111 Identities = 209/307 (68%), Positives = 249/307 (81%) Frame = +2 Query: 107 GASYQRFPRVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVL 286 G +YQRFP V+IRELKD+YAKFEL++TD SMANALRRVMI+EVPT+AI LV+IE NSSVL Sbjct: 3 GVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVL 62 Query: 287 NDEFLAHRLGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVT 466 NDEF+A RL LIPLTS AMSMRF +DC+ C+GD CE CSVEF L+A+ + QTL+VT Sbjct: 63 NDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCV-TDQTLDVT 121 Query: 467 STKDLRSTDPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIAR 646 S +DL S DP V PVD + D+ E H+GI+I KLRRGQEL+L+A+AR Sbjct: 122 S-RDLYSADPTVTPVD----FTSNSSTSDSSE------HKGIIIAKLRRGQELKLKALAR 170 Query: 647 KGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQV 826 KGIGKDHAKWSPAATVT+MYEPDI IN+E+M TLT EEK +ESSPTKVF IDPVT QV Sbjct: 171 KGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQV 230 Query: 827 TIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLR 1006 +VD EAYTYD+EVIKKAEAMGKPGL+EI+ K DSFVFTVE+TGA+ A +L++NAI +L+ Sbjct: 231 VVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILK 290 Query: 1007 QKLDAVR 1027 QKLDA+R Sbjct: 291 QKLDAIR 297
>P16925:CNJC_TETTH Conjugation stage-specific protein - Tetrahymena thermophila| Length = 310 Score = 188 bits (478), Expect = 4e-47 Identities = 114/304 (37%), Positives = 178/304 (58%), Gaps = 5/304 (1%) Frame = +2 Query: 131 RVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHR 310 ++ + L++ +F L++ D S+AN+LRR+++AE+ T+AI V++ N+S L DE++AHR Sbjct: 5 KLTLTNLEEFKCEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYIAHR 64 Query: 311 LGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRST 490 LGLIPL S+ + +C+ G C+ C++ F L + + + LEVTS DL+ Sbjct: 65 LGLIPLNSAKVDDYNYIWNCNC---QGECDRCTIHFDLRV-SNFTNEVLEVTSL-DLKQR 119 Query: 491 DPKVCPVDQQREYQQALGNVDAYE--PDAAGDHR--GILIVKLRRGQELRLRAIARKGIG 658 Q + A+ + Y D G+ R GI I+KL +GQ++ A+KGIG Sbjct: 120 --------QDHTDEDAVRPIKVYSILRDEYGNKREVGIPIIKLSKGQQIHFECEAQKGIG 171 Query: 659 KDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVD 838 K H+KW+P TF EP+I +QE+ + L +E+K++ V + PTKVF I+P T + + D Sbjct: 172 KMHSKWNPVCISTFSVEPEIIFDQEI-QNLDIEQKKALVNACPTKVFGINPHTNTLEVQD 230 Query: 839 AEAYTYDDE-VIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKL 1015 Y +E V K AE KP L++I+ K+D F F VETTG + E++ + LRQKL Sbjct: 231 HMKCMYCEECVYKCAEDFQKPKLIKIDHKKDKFFFKVETTGVMKPVEVLRRGFSTLRQKL 290 Query: 1016 DAVR 1027 D +R Sbjct: 291 DFMR 294
>Q3T0Q3:RPB3_BOVIN DNA-directed RNA polymerase II subunit RPB3 - Bos taurus (Bovine)| Length = 275 Score = 188 bits (477), Expect = 5e-47 Identities = 118/301 (39%), Positives = 169/301 (56%), Gaps = 1/301 (0%) Frame = +2 Query: 116 YQRFPRVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDE 295 Y P VRI EL DE KF +++TD ++AN++RRV IAEVP +AID V+I++NSSVL+DE Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 296 FLAHRLGLIPLTSSGAM-SMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTST 472 F+AHRLGLIPLTS + +++SRDC + C CSVEF L R + QT VTS Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNED-QTRHVTS- 117 Query: 473 KDLRSTDPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKG 652 +DL S P+V PV + +P+ + ILIVKLR+GQELRLRA A+KG Sbjct: 118 RDLISNSPRVIPVTSRNRDN---------DPNDYVEQDDILIVKLRKGQELRLRAYAKKG 168 Query: 653 IGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTI 832 GK+HAKW+P A V F Y+PD + + + W +S +++ + Sbjct: 169 FGKEHAKWNPTAGVAFEYDPD-----NALRHTVYPKPEEWPKSEYSELDE---------- 213 Query: 833 VDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQK 1012 D YD N K + F + VE+ G++ ++++A++ L++K Sbjct: 214 -DESQAPYDP-----------------NGKPERFYYNVESCGSLRPETIVLSALSGLKKK 255 Query: 1013 L 1015 L Sbjct: 256 L 256
>P19387:RPB3_HUMAN DNA-directed RNA polymerase II subunit RPB3 - Homo sapiens (Human)| Length = 275 Score = 186 bits (471), Expect = 2e-46 Identities = 117/301 (38%), Positives = 168/301 (55%), Gaps = 1/301 (0%) Frame = +2 Query: 116 YQRFPRVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDE 295 Y P VRI EL DE KF +++TD ++AN++RRV IAEVP +AID V+I++NSSVL+DE Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 296 FLAHRLGLIPLTSSGAM-SMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTST 472 F+AHRLGLIPL S + +++SRDC + C CSVEF L R + QT VTS Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNED-QTRHVTS- 117 Query: 473 KDLRSTDPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKG 652 +DL S P+V PV + +P+ + ILIVKLR+GQELRLRA A+KG Sbjct: 118 RDLISNSPRVIPVTSRNRDN---------DPNDYVEQDDILIVKLRKGQELRLRAYAKKG 168 Query: 653 IGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTI 832 GK+HAKW+P A V F Y+PD + + + W +S +++ + Sbjct: 169 FGKEHAKWNPTAGVAFEYDPD-----NALRHTVYPKPEEWPKSEYSELDE---------- 213 Query: 833 VDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQK 1012 D YD N K + F + VE+ G++ ++++A++ L++K Sbjct: 214 -DESQAPYDP-----------------NGKPERFYYNVESCGSLRPETIVLSALSGLKKK 255 Query: 1013 L 1015 L Sbjct: 256 L 256
>P97760:RPB3_MOUSE DNA-directed RNA polymerase II subunit RPB3 - Mus musculus (Mouse)| Length = 275 Score = 175 bits (444), Expect = 3e-43 Identities = 117/301 (38%), Positives = 165/301 (54%), Gaps = 1/301 (0%) Frame = +2 Query: 116 YQRFPRVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDE 295 Y P VRI EL +E KF +++TD ++AN++RRV IAEVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62 Query: 296 FLAHRLGLIPLTSSGAM-SMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTST 472 F+AHRLGLIPLTS + +++SRDC + C CSVEF L R + QT VTS Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNED-QTRHVTS- 117 Query: 473 KDLRSTDPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKG 652 +DL S P+V PV + +P+ + ILIVKLR+GQELRLRA +K Sbjct: 118 RDLISNSPRVIPVTSRNRDN---------DPNDYVEQDDILIVKLRKGQELRLRAYVKKR 168 Query: 653 IGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTI 832 GK+HAKW+P A V F Y+PD + T+ K E ++ ++D Sbjct: 169 SGKEHAKWNPTAGVAFEYDPDNGLRH------TVYPKPE--EGPKSEYSELDE------- 213 Query: 833 VDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQK 1012 D YD N K + F + VE+ G++ + ++A++ L++K Sbjct: 214 -DESQAPYDP-----------------NGKPERFYYNVESCGSLRPETIGLSALSGLKKK 255 Query: 1013 L 1015 L Sbjct: 256 L 256
>P16370:RPB3_YEAST DNA-directed RNA polymerase II subunit RPB3 - Saccharomyces| cerevisiae (Baker's yeast) Length = 318 Score = 156 bits (395), Expect = 2e-37 Identities = 104/299 (34%), Positives = 155/299 (51%) Frame = +2 Query: 128 PRVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAH 307 P+V+IRE + F L + D +MAN+LRRVMIAE+PT+AID VE+E+N++VL DEF+AH Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65 Query: 308 RLGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRS 487 RLGLIPL S + +SRDC D C+ CSV L A E ST ++ S Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFG-------ESESTTNVYS 115 Query: 488 TDPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIGKDH 667 D + +G + + G+LI KLR+GQEL+L +A+KGI K+H Sbjct: 116 KDLVI--------VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEH 167 Query: 668 AKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEA 847 AKW PAA + F Y+P + L+ W E K + ++ Sbjct: 168 AKWGPAAAIEFEYDPWNK----------LKHTDYWYEQDSAKEWP-----------QSKN 206 Query: 848 YTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAV 1024 Y+D + G P + A+ D+F VE+ G+I ++++ I L++K+ ++ Sbjct: 207 CEYEDPPNE-----GDP--FDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASI 258
>P37382:RPB3_SCHPO DNA-directed RNA polymerase II subunit RPB3 - Schizosaccharomyces| pombe (Fission yeast) Length = 297 Score = 147 bits (372), Expect = 7e-35 Identities = 105/301 (34%), Positives = 157/301 (52%), Gaps = 7/301 (2%) Frame = +2 Query: 134 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRL 313 + IR + F L +T ++AN+LRRV++AE+PTVAIDLVEI N+SV+ DEFLAHRL Sbjct: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66 Query: 314 GLIPLTSSG-----AMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKD 478 G+IPL SS + + ++R+CD D C CSVE L A+ T G T+E+ + Sbjct: 67 GMIPLDSSNIDEPPPVGLEYTRNCDC---DQYCPKCSVELFLNAKCTGEG-TMEIYARDL 122 Query: 479 LRSTDPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIG 658 + S++ +LG+ +P + RG LI KLR+ QE+ LR IA+KGI Sbjct: 123 VVSSN-------------SSLGHPILADPKS----RGPLICKLRKEQEISLRCIAKKGIA 165 Query: 659 KDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVD 838 K+HAKWSP + V F Y+P + L+ W E+ D Sbjct: 166 KEHAKWSPTSAVAFEYDPWNK----------LQHTDYWFEND----------------AD 199 Query: 839 AEAYTYDDEVIKKAEAMGKPGLVEINAKED--SFVFTVETTGAITAYELIMNAITVLRQK 1012 AE + ++ G+P N +E+ F VE+ G+I E+++ + +L++K Sbjct: 200 AEWPKSKNADWEEPPREGEP----FNFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEK 255 Query: 1013 L 1015 L Sbjct: 256 L 256
>P07703:RPAC1_YEAST DNA-directed RNA polymerases I and III subunit RPAC1 - Saccharomyces| cerevisiae (Baker's yeast) Length = 335 Score = 127 bits (320), Expect = 8e-29 Identities = 97/305 (31%), Positives = 150/305 (49%), Gaps = 7/305 (2%) Frame = +2 Query: 134 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRL 313 V I L A F+L + D S+ANA RR+MI+EVP+VA + V +N+SV+ DE LAHR+ Sbjct: 42 VNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRI 101 Query: 314 GLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTD 493 GL+PL M D + D + + ++ L + T + + STD Sbjct: 102 GLVPLKVDPDMLTWV--DSNLPDDEKFTDENTIVLSLNVKCTRNPDAPK-------GSTD 152 Query: 494 PK-------VCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKG 652 PK V D + E Q A P D IL+ KLR GQE+ L+A G Sbjct: 153 PKELYNNAHVYARDLKFEPQGRQSTTFADCPVVPAD-PDILLAKLRPGQEISLKAHCILG 211 Query: 653 IGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTI 832 IG DHAK+SP +T ++ P I I ++ + E + + + P V ID + + + Sbjct: 212 IGGDHAKFSPVSTASYRLLPQINI----LQPIKGESARRFQKCFPPGVIGIDEGSDEAYV 267 Query: 833 VDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQK 1012 DA T EV++ E K V++ + F+F VE+ GA+T E+ ++ +L+ K Sbjct: 268 KDARKDTVSREVLRYEEFADK---VKLGRVRNHFIFNVESAGAMTPEEIFFKSVRILKNK 324 Query: 1013 LDAVR 1027 + ++ Sbjct: 325 AEYLK 329
>O94616:RPAC1_SCHPO DNA-directed RNA polymerases I and III subunit RPAC1 -| Schizosaccharomyces pombe (Fission yeast) Length = 348 Score = 127 bits (318), Expect = 1e-28 Identities = 95/309 (30%), Positives = 155/309 (50%), Gaps = 10/309 (3%) Frame = +2 Query: 131 RVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHR 310 +V I L E FE+ DAS+ANA RR++IAE+PT+A + V I +N+S++ DE L+HR Sbjct: 47 KVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 106 Query: 311 LGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAAR-------ATDSGQTLEVTS 469 +GL+P+++ M F + + ++ +V F L + ATD + Sbjct: 107 IGLVPISADPDMFKWFQHPLPGQEATHT-DYDTVVFSLNKKCEFNKNAATDEKDPKRLYV 165 Query: 470 TKDLRSTDPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARK 649 ++ S D P +Q E + A + PD I++ KLR GQE+ L A A Sbjct: 166 NSEVYSGDLIWKPQGRQEE-RFADNPIRVVNPD-------IVVAKLRPGQEIDLEAHAIL 217 Query: 650 GIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDID---PVTQ 820 GIG+DHAK+SP AT ++ P I I + + E+ + + P V +++ + Sbjct: 218 GIGQDHAKFSPVATASYRLLPTIHI----LSPIEGEDAVKFQKCFPKGVIELEEGPDGKK 273 Query: 821 QVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITV 1000 Q + D T E ++ E K V++ D ++F+VE+TG + L + +I V Sbjct: 274 QARVADVRKDTVSRECLRHPEFADK---VQLGRVRDHYLFSVESTGIMKPDVLFIKSIAV 330 Query: 1001 LRQKLDAVR 1027 L+ K AV+ Sbjct: 331 LKSKCLAVK 339
>Q32L22:RPAC1_BOVIN DNA-directed RNA polymerases I and III subunit RPAC1 - Bos taurus| (Bovine) Length = 346 Score = 126 bits (316), Expect = 2e-28 Identities = 105/313 (33%), Positives = 161/313 (51%), Gaps = 14/313 (4%) Frame = +2 Query: 131 RVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHR 310 RV + + + +F++ DA++ANA RR+++AEVPT+A++ V + +N+S++ DE LAHR Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109 Query: 311 LGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRST 490 LGLIP+ + + + D +G E +++F L R T + + KD S+ Sbjct: 110 LGLIPIHADPRL-FEYRNQGD----EGGTEIDTLQFRLQVRCTRNPH-----AAKD--SS 157 Query: 491 DPKVCPVDQQREYQQ-----ALGNVDAYEPDAA--GDHRGILIVKLRRGQELRLRAIARK 649 DP V+ R Y + LGN P+ A H ILI +LR GQE+ L K Sbjct: 158 DPNELYVN-HRVYTRHMTWVPLGNQADLFPEGAIRPVHDDILIAQLRPGQEIDLLMHCVK 216 Query: 650 GIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVT 829 GIGKDHAK+SP AT ++ PDI + E +E EE +V +I + Sbjct: 217 GIGKDHAKFSPVATASYRLLPDITL-LEPVEGEAAEELSRCFSPGVIEVQEIQG-KKVAR 274 Query: 830 IVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQ 1009 + + T+ EV + E + K +V + D F+F+VE+TG + L+ AI VL Sbjct: 275 VANPRLDTFSREVFRN-EKLKK--VVRLARVRDHFIFSVESTGVLPPDVLVSEAIKVLMG 331 Query: 1010 K-------LDAVR 1027 K LDAV+ Sbjct: 332 KCQRFLDELDAVQ 344
>Q8PV16:RPOD_METMA DNA-directed RNA polymerase subunit D - Methanosarcina mazei| (Methanosarcina frisia) Length = 266 Score = 122 bits (306), Expect = 3e-27 Identities = 94/300 (31%), Positives = 140/300 (46%), Gaps = 5/300 (1%) Frame = +2 Query: 134 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRL 313 V I EL D AKF L + AN +RR MIA+VPT+AI+ V + N+SVL DE LA RL Sbjct: 5 VDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLALRL 64 Query: 314 GLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTD 493 LIPL + M +C+ C G+G C C V L+A + ++DL S+D Sbjct: 65 SLIPLVTDIETYMP-QAECEVCGGEG-CPACEVSLTLSAEGPGT------VYSRDLISSD 116 Query: 494 PKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIGKDHAK 673 PK+ P D I IV+L++GQ+L L AIA G G+D K Sbjct: 117 PKIQPADP-----------------------NIPIVELKKGQKLVLEAIAHMGYGRDSVK 153 Query: 674 WSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYT 853 W + P I I + P + + + +A A Sbjct: 154 WQAGVACGYKNVPVITIE-------NCDACGHCAAECPKGI---------IRVEEAGARI 197 Query: 854 YDDEVIK-----KAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLD 1018 +D++IK E + ++++ E++FVFT+E+ G+ TA +L +NA V++ K + Sbjct: 198 AEDDLIKCSLCRLCEQVCDINAIKVDFYENAFVFTMESDGSYTAKDLTINAANVIKGKAE 257
>O28002:RPOD_ARCFU DNA-directed RNA polymerase subunit D - Archaeoglobus fulgidus| Length = 264 Score = 120 bits (300), Expect = 2e-26 Identities = 87/297 (29%), Positives = 142/297 (47%) Frame = +2 Query: 128 PRVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAH 307 P + I E KD KF LK+ ++AN+ RR M AEVP +A+D V+I NSS DE +AH Sbjct: 3 PEIEILEEKDFKIKFILKNASPALANSFRRAMKAEVPAMAVDYVDIYLNSSYFYDEVIAH 62 Query: 308 RLGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRS 487 RL ++P+ + RF+ + G C +C + F L +V + D S Sbjct: 63 RLAMLPIKT---YLDRFNMQSECSCGGEGCPNCQISFRLNVEGP------KVVYSGDFIS 113 Query: 488 TDPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIGKDH 667 DP V A+ N+ +++L GQ+L L A+AR G G++H Sbjct: 114 DDPDVV---------FAIDNIP--------------VLELFEGQQLMLEAVARLGTGREH 150 Query: 668 AKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEA 847 AK+ P + + P+I +N+ +E+ P VF+ D +V + + A Sbjct: 151 AKFQPVSVCVYKIIPEIVVNE------NCNGCGDCIEACPRNVFEKD--GDKVRVKNVMA 202 Query: 848 YTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLD 1018 + E ++ E + +N + ++F+FTVE TGA+ E++ A+ +LR K + Sbjct: 203 CSMCGECVEVCEM----NAISVN-ETNNFLFTVEGTGALPVREVMKKALEILRSKAE 254
>O15160:RPAC1_HUMAN DNA-directed RNA polymerases I and III subunit RPAC1 - Homo sapiens| (Human) Length = 346 Score = 120 bits (300), Expect = 2e-26 Identities = 100/314 (31%), Positives = 160/314 (50%), Gaps = 15/314 (4%) Frame = +2 Query: 131 RVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHR 310 RV + + + +F++ DA++ANA RR+++AEVPT+A++ V + +N+S++ DE LAHR Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109 Query: 311 LGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRST 490 LGLIP+ + R + D +G+ E +++F L R T + + KD S+ Sbjct: 110 LGLIPIHA----DPRLFEYRNQGDEEGT-EIDTLQFRLQVRCTRNPH-----AAKD--SS 157 Query: 491 DPKVCPVDQQREYQQ----ALGNVDAYEPDAA--GDHRGILIVKLRRGQELRLRAIARKG 652 DP V+ + + LGN P+ H ILI +LR GQE+ L KG Sbjct: 158 DPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKG 217 Query: 653 IGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPV--TQQV 826 IGKDHAK+SP AT ++ PDI L+E + E + V ++ V + Sbjct: 218 IGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVA 273 Query: 827 TIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLR 1006 + + T+ E+ + E + K +V + D ++F+VE+TG + L+ AI VL Sbjct: 274 RVANPRLDTFSREIFRN-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLM 330 Query: 1007 QK-------LDAVR 1027 K LDAV+ Sbjct: 331 GKCRRFLDELDAVQ 344
>P52432:RPAC1_MOUSE DNA-directed RNA polymerases I and III subunit RPAC1 - Mus musculus| (Mouse) Length = 346 Score = 117 bits (293), Expect = 1e-25 Identities = 93/302 (30%), Positives = 157/302 (51%), Gaps = 8/302 (2%) Frame = +2 Query: 131 RVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHR 310 RV + ++ ++ +F++ DA++ANA RR+++A VPT+A++ V + +N+S++ DE LAHR Sbjct: 50 RVGVVQMDEDTLEFDMVGIDAAIANAFRRILLARVPTMAVEKVLVYNNTSIVQDEILAHR 109 Query: 311 LGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRST 490 LGLIP+ + R + + +G+ E +++F L R T + + KD S+ Sbjct: 110 LGLIPILA----DPRLFEYRNQGEEEGT-EIDTLQFRLQVRCTRN-----PNAAKD--SS 157 Query: 491 DPKVCPVDQQREYQQ----ALGNVDAYEPDAA--GDHRGILIVKLRRGQELRLRAIARKG 652 DP V+ + + LGN P+ H ILI +LR GQE+ L KG Sbjct: 158 DPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDILIAQLRPGQEIDLMMHCVKG 217 Query: 653 IGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPV--TQQV 826 IGKDHAK+SP AT ++ P I L+E + E + + V +++ V + Sbjct: 218 IGKDHAKFSPVATASYRLLPAI----TLLEPVEGEAAEELSQCFSPGVIEVEEVQGKKVA 273 Query: 827 TIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLR 1006 + +A T+ E+ + E + K V + D ++F+VE+TG + L+ AI +L Sbjct: 274 RVANARLDTFSREIFRH-EKLKK--AVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILM 330 Query: 1007 QK 1012 K Sbjct: 331 GK 332
>O26144:RPOD_METTH DNA-directed RNA polymerase subunit D - Methanobacterium| thermoautotrophicum Length = 264 Score = 114 bits (285), Expect = 9e-25 Identities = 82/299 (27%), Positives = 136/299 (45%), Gaps = 2/299 (0%) Frame = +2 Query: 134 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRL 313 + ++E D F + NA+RR+ + EVP +AI+ V + N + + DE LAHRL Sbjct: 3 IALKEKTDTEMVFVVSGVTVPFINAIRRICMMEVPKLAIEYVNMYRNDAKMFDEVLAHRL 62 Query: 314 GLIPLTSSG--AMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRS 487 GL+PL + A S++ +CD + C CSV L + V + DL S Sbjct: 63 GLVPLAADPEFAESLKMPEECDC---EEYCSECSVSLTLRKKGPG------VVYSGDLVS 113 Query: 488 TDPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIGKDH 667 P V PV PD I +VKL EL L A+A+ G+G++H Sbjct: 114 ETPAVKPV----------------YPD-------IPLVKLGDDDELELEAVAQLGVGREH 150 Query: 668 AKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEA 847 AKW P + Y P I +++ E L +E+ P V + + + +VD E Sbjct: 151 AKWEPTTACAYKYYPRIEFSEDCDECL------ECIEACPRDV--LGEESGKPVVVDLEN 202 Query: 848 YTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAV 1024 + ++ + +++ +E F+F +ET G++ ++++ A +LR K + V Sbjct: 203 CSMCKSCVRACDKRA----IDVGYEEGKFIFRIETDGSVDPKDVLLKACDILRDKAEQV 257
>Q8U0E4:RPOD_PYRFU DNA-directed RNA polymerase subunit D - Pyrococcus furiosus| Length = 261 Score = 110 bits (276), Expect = 1e-23 Identities = 94/295 (31%), Positives = 138/295 (46%) Frame = +2 Query: 134 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRL 313 V+I E K++ KF LK S ANALRR ++ EVPT A+D VE N S L DE +AHRL Sbjct: 6 VQILEKKEDSIKFVLKGVHVSFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRL 65 Query: 314 GLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTD 493 +IPLT+ RF + DA + D S+E A G + + DL+S D Sbjct: 66 AMIPLTTP---VDRF--ELDALELDDYTVTLSLE------AEGPG----IVYSGDLKSDD 110 Query: 494 PKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIGKDHAK 673 P V PV+ I IVKL GQ L A A+ G GKDHAK Sbjct: 111 PDVKPVNP-----------------------NIPIVKLAEGQRLVFNAYAKLGRGKDHAK 147 Query: 674 WSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYT 853 W P V + Y + I++ + E L+ + + + ++ ++V + + + Sbjct: 148 WQP-GFVYYKYYTIVHISKSIPEWKELK------KLAKKRGLPVEETEEEVLVTTIKPFY 200 Query: 854 YDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLD 1018 + E GK EI ++++FTVET G + E++ A+ +L +K D Sbjct: 201 IPKDF---EEYEGKEIWEEI--VPNTYIFTVETNGELPVEEIVSIALKILMRKAD 250
>Q5JJF4:RPOD_PYRKO DNA-directed RNA polymerase subunit D - Pyrococcus kodakaraensis| (Thermococcus kodakaraensis) Length = 259 Score = 109 bits (273), Expect = 2e-23 Identities = 94/294 (31%), Positives = 134/294 (45%) Frame = +2 Query: 137 RIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLG 316 +I E + + KF + D ANALRR +++EVPT A+D VE N S L DE +AHRL Sbjct: 5 KILEKRPDSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIAHRLA 64 Query: 317 LIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTDP 496 +IPLT+ RFS D D L+ A G + + DL+S+D Sbjct: 65 MIPLTTP---HERFSLDALELD--------DYTVTLSLEAEGPG----MVYSGDLKSSDG 109 Query: 497 KVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIGKDHAKW 676 V P + I IVKL GQ L A AR G GKDHAKW Sbjct: 110 DVKPANP-----------------------NIPIVKLAEGQRLTFNAYARLGRGKDHAKW 146 Query: 677 SPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYTY 856 P V + Y I +++++ + L+ E + + ++ +++ I +A+ Sbjct: 147 QP-GFVYYKYLTKIHVSKDVPDWEELK------ELAERRGLPVEESDEEIVITTIKAFYL 199 Query: 857 DDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLD 1018 K E MGK EI SFVFTVET G + E++ A+ +L +K D Sbjct: 200 PR---KFEEHMGKGIREEI--VPGSFVFTVETNGELPVEEIVSIALKILMRKSD 248
>Q8TVB8:RPOD_METKA DNA-directed RNA polymerase subunit D - Methanopyrus kandleri| Length = 275 Score = 108 bits (270), Expect = 5e-23 Identities = 88/305 (28%), Positives = 136/305 (44%), Gaps = 6/305 (1%) Frame = +2 Query: 131 RVRI---RELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFL 301 RVR+ R+ E A F +++T A N +RR + VPT+ I+ V I N + + DE L Sbjct: 5 RVRLYDYRKADVERATFIIEETSAEFVNTIRRALYTLVPTLRIEEVIIYENDTPMYDEML 64 Query: 302 AHRLGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDL 481 AHRLGLIPL CD C G G CE C V L +DL Sbjct: 65 AHRLGLIPLRVDDIDQFELPDLCD-CGGKG-CEKCQVRAELEVEGPTK------VYARDL 116 Query: 482 RSTDPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIGK 661 + P V P PD LI ++ Q +RL IA G+G Sbjct: 117 KFDHPDVEPA----------------FPDT-------LITEVGEDQRIRLEVIAVPGLGL 153 Query: 662 DHAKWSPAATVTFMYEPDIRINQELM--ETLTLEEKQSWVESSPTKVFDIDPVTQQVTIV 835 +HAKW P + V + P++ I+++ + + +T E Q + +V ID + + Sbjct: 154 EHAKWKPVSAVGYKGLPELEIDEDKLKEKKITYECPQGIIRIENGEVVHID----EDRLP 209 Query: 836 DAEAY-TYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQK 1012 + Y Y+ E G V + ++D+FVF VET G+++ I+ A+ + K Sbjct: 210 ECRMYKEYERET---------DGAVRVRLRDDAFVFNVETDGSMSLDTAILKALDAIEHK 260 Query: 1013 LDAVR 1027 L++++ Sbjct: 261 LESLK 265
>Q8ZYQ3:RPOD_PYRAE DNA-directed RNA polymerase subunit D - Pyrobaculum aerophilum| Length = 260 Score = 102 bits (255), Expect = 3e-21 Identities = 92/297 (30%), Positives = 138/297 (46%), Gaps = 3/297 (1%) Frame = +2 Query: 131 RVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHR 310 R + E + + K ++ S+ N+LRRV+I+E+P +AID V + +N+SV+ DE LAHR Sbjct: 3 RATVVERGEYFLKAVVEGVPPSLVNSLRRVIISELPVMAIDNVVVVNNTSVMYDEMLAHR 62 Query: 311 LGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRST 490 LGLIPLT+ S+ DC + D S CS L + T G T + DL S Sbjct: 63 LGLIPLTTP-LQSLPPYEDCVSGLADPS--ECST--RLTLQVTAEGDT--TIYSGDLASD 115 Query: 491 DPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIGKDHA 670 P V PV ++ I IVKL +GQ + L A A+ G+ KDHA Sbjct: 116 RPDVVPV-----------------------YKDIPIVKLVKGQSIVLEAYAKLGVAKDHA 152 Query: 671 KWSPAATVTFMYEPDIRINQELMETLTLE---EKQSWVESSPTKVFDIDPVTQQVTIVDA 841 KW AAT ++ Y P + + E + E + ++ +E S K Sbjct: 153 KWQ-AATASYYYYPKVVVKSENCREMCKEICRQLENPIECSFNK---------------- 195 Query: 842 EAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQK 1012 A+T D + K GL E+ ++ +VF VE+ G + A +L++K Sbjct: 196 -AWTCKD--------LCKEGL-EVTWDKNKYVFWVESFGNYDVNTALREAFRILKRK 242
>Q9V198:RPOD_PYRAB DNA-directed RNA polymerase subunit D - Pyrococcus abyssi| Length = 259 Score = 102 bits (255), Expect = 3e-21 Identities = 93/295 (31%), Positives = 135/295 (45%) Frame = +2 Query: 134 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRL 313 ++I + D+ F L+ D + ANALRR ++ EVPT A+D VE N S L DE +AHRL Sbjct: 4 IKILKKTDDSITFILEGVDVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHRL 63 Query: 314 GLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTD 493 +IPL + RF + DA + D S+E A G + + DL+S D Sbjct: 64 AMIPLKTP---VDRF--ELDALELDDYTVTLSLE------AEGPG----IVYSGDLKSDD 108 Query: 494 PKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIGKDHAK 673 P V P + PD I IVKL +GQ L A A+ G GKDHAK Sbjct: 109 PDVKPAN----------------PD-------IPIVKLAKGQRLVFNAFAKLGRGKDHAK 145 Query: 674 WSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYT 853 W P T + Y I I++E+ E +K + P K + IV+ Sbjct: 146 WQPGFTY-YKYFTRIHISKEI-EGWEKLKKLAKKRGLPVK------ENENEVIVETIKPF 197 Query: 854 YDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLD 1018 Y + ++ E G + +++VF VET G + E++ A+ +L +K D Sbjct: 198 YIPKEFEEYEGKG----IWEEIVPNTYVFVVETNGELPVEEIVKIALKILMRKAD 248
>O59303:RPOD_PYRHO DNA-directed RNA polymerase subunit D - Pyrococcus horikoshii| Length = 259 Score = 102 bits (254), Expect = 3e-21 Identities = 95/296 (32%), Positives = 139/296 (46%) Frame = +2 Query: 131 RVRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHR 310 +++I + ++ F L+ + ANALRR ++ EVPT A+D VE N S L DE +AHR Sbjct: 3 KIKILKKTEDSITFILEGVSVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62 Query: 311 LGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRST 490 L +IPL + + RF + DA + D S+E A G + + DL+S Sbjct: 63 LAMIPLKTP---TDRF--ELDALELDDYTVTLSLE------AEGPG----IVYSGDLKSD 107 Query: 491 DPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIGKDHA 670 DP V PV PD I IVKL +GQ L A A+ G GKDHA Sbjct: 108 DPDVKPV----------------TPD-------IPIVKLAKGQRLVFNAYAKLGRGKDHA 144 Query: 671 KWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAY 850 KW P T + Y + I++++ L K + PTK ++ IV+ Sbjct: 145 KWQPGFTY-YKYFTRVHISKKINGWEKL-AKLAKKRGLPTK------ENEEEVIVETIKP 196 Query: 851 TYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLD 1018 Y + ++ E GK EI D++VF VET G + E++ A+ +L +K D Sbjct: 197 FYIPKEFEEYE--GKEIWEEI--VPDTYVFVVETNGELPVEEIVKIALRILMRKAD 248
>Q6KZP5:RPOD_PICTO DNA-directed RNA polymerase subunit D - Picrophilus torridus| Length = 271 Score = 102 bits (254), Expect = 3e-21 Identities = 84/305 (27%), Positives = 139/305 (45%), Gaps = 12/305 (3%) Frame = +2 Query: 140 IRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLV------------EIESNSSV 283 I ELKD Y KF + ++AN++RR +I ++P +AI+ V + +S Sbjct: 4 IIELKDNYIKFSISGITPAIANSIRRTLINDIPKLAIENVVFHHGEIRDSEGNVYDSSLP 63 Query: 284 LNDEFLAHRLGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEV 463 L DE +A RLGLIPL + + M F C +C+G+G C+ C+V++ + +V Sbjct: 64 LFDEVVALRLGLIPLKTD--LKMNFRDQC-SCNGEG-CDLCTVKYSINKLGP-----ADV 114 Query: 464 TSTKDLRSTDPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIA 643 S+ + +P + PVD I IVKL++GQ + + A Sbjct: 115 FSSDLIPINNPDLKPVDPM-----------------------IPIVKLKKGQAMLVTCEA 151 Query: 644 RKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQ 823 G GKDHAKW + V++ Y + +IN+ LE + + P V I + Sbjct: 152 IMGRGKDHAKWQVTSGVSYKYHREFKINKN-----ELENWSFYKDKCPKSV--ISENENE 204 Query: 824 VTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVL 1003 +T D Y ++ + V I + F+F ET G++TA E + A+ L Sbjct: 205 ITFTDDVECRYLQQLFDEKSG------VTITEDDTKFIFQFETDGSLTAIETLDYALKRL 258 Query: 1004 RQKLD 1018 +++ + Sbjct: 259 KERFN 263
>Q97B93:RPOD_THEVO DNA-directed RNA polymerase subunit D - Thermoplasma volcanium| Length = 271 Score = 98.6 bits (244), Expect = 5e-20 Identities = 90/308 (29%), Positives = 137/308 (44%), Gaps = 15/308 (4%) Frame = +2 Query: 134 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLV------------EIESNS 277 V+I +L D+Y FE+ S ANALRR +I ++P +AI+ V + +S Sbjct: 3 VKIFKLSDKYMSFEIDGITPSQANALRRTLINDIPKLAIENVTFHHGEIRDAEGNVYDSS 62 Query: 278 SVLNDEFLAHRLGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTL 457 L DE +AHRLGLIPL + +S+ F C +C G G C C+V + + S + Sbjct: 63 LPLFDEMVAHRLGLIPLKTD--LSLNFRDQC-SCGGKG-CSLCTVTYSINKIGPASVMSG 118 Query: 458 EVTSTKDLRSTDPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRA 637 ++ + + P + PVD PD I IVKL Q + + A Sbjct: 119 DIQAI-----SHPDLVPVD----------------PD-------IPIVKLGAKQAILITA 150 Query: 638 IARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWV---ESSPTKVFDID 808 A G K+HAKW + V + Y + +N++L E W E P V D Sbjct: 151 EAILGTAKEHAKWQVTSGVAYKYHREFEVNKKLFE--------DWAKIKERCPKSVLSED 202 Query: 809 PVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMN 988 + TIV + Y +D I + + V+I + F+F ET G++TA E + Sbjct: 203 ----ENTIVFTDDYGCNDLSI-----LFESDGVQIKEDDSRFIFHFETDGSLTAEETLSY 253 Query: 989 AITVLRQK 1012 A+ L + Sbjct: 254 ALNRLMDR 261
>Q9YB53:RPOD_AERPE DNA-directed RNA polymerase subunit D - Aeropyrum pernix| Length = 286 Score = 96.3 bits (238), Expect = 3e-19 Identities = 75/294 (25%), Positives = 130/294 (44%) Frame = +2 Query: 134 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRL 313 V + EL + ++ NA+RR ++++VPT+A+D I N++ + DE +AHRL Sbjct: 9 VEVVELDSLRVRLRIRGYPVVFVNAIRRTVLSDVPTMAVDYAYIFDNTTAVYDEMVAHRL 68 Query: 314 GLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTD 493 GL+ L S+ A+ ++ R + + S E C VE L A G+T + DL +D Sbjct: 69 GLVVLDSNEAVE-KYRRPEECAGKEPSEEDCFVEVSLEAEVDAEGETGRYITAGDLSISD 127 Query: 494 PKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIGKDHAK 673 P+V PV + ++ + GQ + ++A AR G GK+H K Sbjct: 128 PQVKPVYPETP-----------------------LIYVAPGQRIHVQAFARLGRGKEHTK 164 Query: 674 WSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYT 853 WSPA+ Y P + + LE + + P V + + +++ T Sbjct: 165 WSPASLSVLRYTPILIYDSSKAGDECLE----CLSAYPQVVEALKSGGKGSLVLEGLRRT 220 Query: 854 YDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKL 1015 ++ G VE+ + VE+TGA+ +++ AI L +K+ Sbjct: 221 ---SGLRYCAETACRGAVEVRYDSSNLDLEVESTGALRPEKIVELAIRELEEKV 271
>Q9HJD9:RPOD_THEAC DNA-directed RNA polymerase subunit D - Thermoplasma acidophilum| Length = 271 Score = 95.1 bits (235), Expect = 6e-19 Identities = 83/308 (26%), Positives = 137/308 (44%), Gaps = 13/308 (4%) Frame = +2 Query: 134 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLV------------EIESNS 277 V+I +L D+Y +FE+ S ANALRR +I ++P +AI+ V + +S Sbjct: 3 VKIFKLSDKYIRFEIDGITPSQANALRRTLINDIPKLAIENVTFHHGEIRDSEGNVYDSS 62 Query: 278 SVLNDEFLAHRLGLIPLTSSGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTL 457 L DE +AHRLGLIPL + ++M F C +C G G C C+V + + + Sbjct: 63 LPLFDEMVAHRLGLIPLKTD--LTMNFRDQC-SCGGKG-CSLCTVTYSINKLGPST---- 114 Query: 458 EVTSTKDLRS-TDPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLR 634 + DL++ + P + PVD + I IVKL Q + + Sbjct: 115 --VFSSDLQAVSHPDLIPVDGE-----------------------IPIVKLGPKQAILIT 149 Query: 635 AIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPV 814 A A G K+HAKW + V++ Y + ++++ E+ Q + P V Sbjct: 150 AEAILGTAKEHAKWQVTSGVSYKYHREFHVSKK-----DFEDWQKLKGACPKSV------ 198 Query: 815 TQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAI 994 ++ D E DD + + V + + F+F ET G++TA E ++ A+ Sbjct: 199 ---MSETDTEIVFTDDFGCNDLNVLFESDGVNMIEDDSRFIFQFETDGSLTAKETLLYAL 255 Query: 995 TVLRQKLD 1018 L+ + D Sbjct: 256 NRLKDRWD 263
>P95989:RPOD_SULSO DNA-directed RNA polymerase subunit D - Sulfolobus solfataricus| Length = 265 Score = 93.6 bits (231), Expect = 2e-18 Identities = 74/273 (27%), Positives = 128/273 (46%), Gaps = 1/273 (0%) Frame = +2 Query: 203 NALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSSGAM-SMRFSRDCDAC 379 NA+RR + VP +A+D V N+S L DE LAHRL LIP S A+ + R+ +C C Sbjct: 26 NAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRLALIPFMSEEALDTYRWPEECIEC 85 Query: 380 DGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTDPKVCPVDQQREYQQALGNVDAY 559 +CE C + ++ A A + + + +KD++S DP V P+ Sbjct: 86 --TENCEKCYTKIYIEAEAPNEPRMI---YSKDIKSEDPSVVPI---------------- 124 Query: 560 EPDAAGDHRGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRINQELM 739 +GD I IV L Q++ L A R G GK+HAK+ P + Y P + I Sbjct: 125 ----SGD---IPIVLLGTNQKISLEARLRLGYGKEHAKFIPVSLSVVRYYPKVEI----- 172 Query: 740 ETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINA 919 L + V P VF++ ++++ + + T +E ++ G + I+ Sbjct: 173 ----LANCEKAVNVCPEGVFELK--DGKLSVKNELSCTLCEECLRYCN-----GSIRISF 221 Query: 920 KEDSFVFTVETTGAITAYELIMNAITVLRQKLD 1018 ED ++ +E+ G++ +++ A + +K++ Sbjct: 222 VEDKYILEIESVGSLKPERILLEAGKSIIRKIE 254
>Q96YW0:RPOD_SULTO DNA-directed RNA polymerase subunit D - Sulfolobus tokodaii| Length = 264 Score = 92.0 bits (227), Expect = 5e-18 Identities = 76/278 (27%), Positives = 129/278 (46%), Gaps = 1/278 (0%) Frame = +2 Query: 197 MANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSSGAMS-MRFSRDCD 373 + N++RR I VP +A+D V N+S L DE LAHRL +IP +S A+ R +C Sbjct: 24 LVNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLAMIPFSSDEALDHYRPPEECA 83 Query: 374 ACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTDPKVCPVDQQREYQQALGNVD 553 C +C+ C +L A + G+T+ V S +DL++ DP + P+ GN+ Sbjct: 84 EC--KENCDGCYARVYLDVGANE-GETVMVYS-RDLKTDDPAIVPIS---------GNIP 130 Query: 554 AYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRINQE 733 IV L Q++ L A R G GK+H K+SP + Y P + + Sbjct: 131 --------------IVLLGPKQKVTLEARLRLGYGKEHIKFSPVSIAVVRYYPHVEVKGN 176 Query: 734 LMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEI 913 + E P VF ++ ++ + + A T +E IK E + I Sbjct: 177 CEKAF---------EVCPEGVFGME--NGKLFVKNEVACTLCEECIKYCE-----NNIFI 220 Query: 914 NAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAVR 1027 +A E+ ++ +E+ G++ +++ A L +KL+ ++ Sbjct: 221 SAVENKYILEIESVGSLKPERILIEAGKSLLRKLNQLK 258
>P39471:RPOD_SULAC DNA-directed RNA polymerase subunit D - Sulfolobus acidocaldarius| Length = 264 Score = 87.4 bits (215), Expect = 1e-16 Identities = 77/285 (27%), Positives = 124/285 (43%), Gaps = 1/285 (0%) Frame = +2 Query: 176 LKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSSGAMS-M 352 L++ N++RR I VP +A+D V N+S L DE LAHRL L+P S A+ Sbjct: 17 LENYPLEFVNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLALVPFVSDEALEHY 76 Query: 353 RFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTDPKVCPVDQQREYQ 532 R +C C +C+ C +L A D Q L + S +DL+S D + PV Sbjct: 77 RPPEECAEC--KENCDGCYNRVYLDVEAKD--QPLMIYS-RDLKSEDQMITPVS------ 125 Query: 533 QALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP 712 I IV L Q++ L A R G GK+H K+SP + Y P Sbjct: 126 -----------------GAIPIVLLGSKQKISLEARLRLGYGKEHIKYSPVSVSIVRYYP 168 Query: 713 DIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMG 892 + + L + VE P VF ++ ++ + + + +E +K Sbjct: 169 KVTV---------LGNCEKAVEVCPEGVFAME--NNKLVVKNELSCILCEECLKYC---- 213 Query: 893 KPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAVR 1027 G V I + E+ F+ +E+ G++ +++ A L +KL ++ Sbjct: 214 -AGSVSIESVENKFILEIESVGSLKPERILIEASKSLLRKLSELK 257
>Q9HQJ4:RPOD_HALSA DNA-directed RNA polymerase subunit D - Halobacterium salinarium| (Halobacterium halobium) Length = 248 Score = 79.0 bits (193), Expect = 4e-14 Identities = 79/292 (27%), Positives = 116/292 (39%), Gaps = 4/292 (1%) Frame = +2 Query: 155 DEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTS 334 D A+F +++ + AN +RR ++ +VPT++ID V NSSV+ DE L RLGL+PLT+ Sbjct: 15 DREARFVVRNITPAFANGIRRAILVDVPTLSIDTVRFVENSSVMFDEQLGLRLGLVPLTT 74 Query: 335 SGAMSMRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTK---DLRSTDPKVC 505 E + A A +E T DL S DP+V Sbjct: 75 P-------------------------EDYAAGEAVTLALDVEGPGTAYSGDLVSNDPEVE 109 Query: 506 PVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIGKDHAKWSPA 685 D+ I I++L+ Q L L A A G G+DHAK Sbjct: 110 AADE-----------------------NIPIIELKDDQRLELEADAVMGHGRDHAKHQGG 146 Query: 686 ATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDE 865 V + + + + V SP D + + V D E DD Sbjct: 147 VAVGYRHLQRVHV----------------VGDSPEYADDDPQMLRGVIEEDDELVPTDD- 189 Query: 866 VIKKAEAMGKPGL-VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLD 1018 PG VEI + +FVF VE+ G++ EL++ A+ L + D Sbjct: 190 -FDNDLTTRYPGKEVEIEDVDGAFVFHVESDGSMPVEELVLRAVDTLVDRAD 240
>Q00813:RPOD_HALMA DNA-directed RNA polymerase subunit D - Haloarcula marismortui| (Halobacterium marismortui) Length = 259 Score = 76.3 bits (186), Expect = 3e-13 Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 3/296 (1%) Frame = +2 Query: 134 VRIRELKDEYAKFELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRL 313 V E + A+ ++ + AN +RR M+A+VPT +ID V + N+SV+ +E + RL Sbjct: 7 VEFVERGEREARILVRGITPAFANGIRRAMVADVPTFSIDTVRVIENTSVMFNEQIGLRL 66 Query: 314 GLIPLTSSGAMSMRFSRDCDACD-GDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRST 490 GL+PLT+ D D + GD SV+ A ++ DL S+ Sbjct: 67 GLVPLTT----------DLDDFEIGDEVTLSLSVDGPSTAYSS------------DLVSS 104 Query: 491 DPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIGKDHA 670 DP V +AA D+ I I+ L+ GQ L + A A G++HA Sbjct: 105 DPMV---------------------EAADDN--IPIIDLKEGQRLEVEADAVLDTGREHA 141 Query: 671 KWSPAATVTFMYEPDIRINQELMETLTLEEK--QSWVESSPTKVFDIDPVTQQVTIVDAE 844 K V + + + + +L E + + +E + D ++ D Sbjct: 142 KHQGGVAVGYRHLQQVEVVGDLGEFEDDDPNILRGVIEEQAAEHAAGDATNGELVATD-- 199 Query: 845 AYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQK 1012 +D+++ + GK VE++ ++FVF VET G+ T EL++ A+ LR + Sbjct: 200 --EFDNDL--RNRYPGKD--VEVSDVPNAFVFHVETDGSFTTEELVLRAVETLRDR 249
>Q57648:RPOD_METJA DNA-directed RNA polymerase subunit D - Methanococcus jannaschii| Length = 191 Score = 71.6 bits (174), Expect = 7e-12 Identities = 57/175 (32%), Positives = 77/175 (44%) Frame = +2 Query: 170 FELKDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPLTSSGAMS 349 F LK S +NA+RR+MI+EVPT AI+ V I NSS ++DE LAHRLGLIP+ G Sbjct: 18 FSLK-APISFSNAIRRIMISEVPTFAIEDVYIYENSSSMDDEILAHRLGLIPI--KGKPL 74 Query: 350 MRFSRDCDACDGDGSCEHCSVEFHLAARATDSGQTLEVTSTKDLRSTDPKVCPVDQQREY 529 + + +G C + DL+S + +V Sbjct: 75 LENEVITFTLEKEGPC---------------------TVYSSDLKSENGEVA-------- 105 Query: 530 QQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 694 + I IVKL +GQ +++ A GIGK HAKW P V Sbjct: 106 -----------------FKNIPIVKLGKGQRIQIECEAIPGIGKVHAKWQPCNAV 143
>Q3A9U4:RPOA_CARHZ DNA-directed RNA polymerase alpha chain - Carboxydothermus| hydrogenoformans (strain Z-2901 / DSM 6008) Length = 313 Score = 35.0 bits (79), Expect = 0.68 Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Frame = +2 Query: 128 PRVRIRELKDEYAKFELKDTD----ASMANALRRVMIAEVPTVAIDLVEIE 268 P++ EL D Y +F ++ + ++ N++RR++++ +P A+ ++IE Sbjct: 7 PKIETEELNDRYGRFVIEPLERGYGITLGNSMRRILLSSLPGAAVTSIKIE 57
>Q7MTP0:RPOA_PORGI DNA-directed RNA polymerase alpha chain - Porphyromonas gingivalis| (Bacteroides gingivalis) Length = 330 Score = 33.9 bits (76), Expect = 1.5 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Frame = +2 Query: 113 SYQRFPRVRIRELKDEYAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 268 ++Q+ V + E D AKFE K + ++ NALRR++++ + AI ++IE Sbjct: 5 AFQKPENVLMMETSDSIAKFEFKPLEPGYGITIGNALRRILLSSLEGFAITAIKIE 60
>Q18CI5:RPOA_CLOD6 DNA-directed RNA polymerase alpha chain - Clostridium difficile| (strain 630) Length = 315 Score = 33.9 bits (76), Expect = 1.5 Identities = 17/53 (32%), Positives = 35/53 (66%), Gaps = 6/53 (11%) Frame = +2 Query: 128 PRVRIRELKDEY--AKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIE 268 P+V I EL ++Y KF ++ + ++ NALRR++++ +P VA++ ++I+ Sbjct: 7 PKVDIVELSEDYRYGKFVIEPLERGYGITIGNALRRILLSSLPGVAVNAIKID 59
>Q5QXV8:RPOA_IDILO DNA-directed RNA polymerase alpha chain - Idiomarina loihiensis| Length = 329 Score = 33.5 bits (75), Expect = 2.0 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 19/152 (12%) Frame = +2 Query: 623 LRLRAIARKGIGKDHAKWS-------PAATVTFMYEPDIRI------------NQELMET 745 L L+ +A GKD A + P F ++ D+ I + EL+ Sbjct: 83 LNLKGLAVSVEGKDEATLTLNKSGAGPVTAGDFTHDGDVEIVNPEHVICHLTGDYELVMR 142 Query: 746 LTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKE 925 + +E + +V ++ + D D +VDA +++ + + +A VE Sbjct: 143 VKVERGRGYVPAASRQSADDDERPIGRLLVDA-SFSPVERIAYSVDA----ARVEQRTDL 197 Query: 926 DSFVFTVETTGAITAYELIMNAITVLRQKLDA 1021 D V +ET G + E I A T+L ++LDA Sbjct: 198 DKLVIEMETNGTLDPEEAIRRAATILAEQLDA 229
>Q65QY0:RPOA_MANSM DNA-directed RNA polymerase alpha chain - Mannheimia| succiniciproducens (strain MBEL55E) Length = 329 Score = 33.1 bits (74), Expect = 2.6 Identities = 24/64 (37%), Positives = 31/64 (48%) Frame = +2 Query: 830 IVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQ 1009 +VDA Y+ D + EA VE D V +ET GAI E I A T+L + Sbjct: 172 LVDA-CYSPVDRIAYNVEA----ARVEQRTDLDKLVIELETNGAIDPEEAIRRAATILAE 226 Query: 1010 KLDA 1021 +LDA Sbjct: 227 QLDA 230
>P39826:CDC3_CANAL Cell division control protein 3 - Candida albicans (Yeast)| Length = 416 Score = 33.1 bits (74), Expect = 2.6 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Frame = +2 Query: 605 LRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTL-EEKQSWVES 781 +RRG L + AI G+GK A + ++ DI +Q + EE+ V+ Sbjct: 30 IRRGFSLNIMAIGESGLGK-------ATLINTLFNRDIITSQHDSDEFDEGEEEDVSVKI 82 Query: 782 SPTKV-FDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFV 937 T+ + D V +V+++ A + E I EA KP + EIN++ DS++ Sbjct: 83 KSTQAEIEEDGVKLKVSVITAPGF---GESINNVEAW-KPIVDEINSRFDSYL 131
>P31449:YIDL_ECOLI Uncharacterized HTH-type transcriptional regulator yidL -| Escherichia coli Length = 307 Score = 32.7 bits (73), Expect = 3.4 Identities = 19/52 (36%), Positives = 30/52 (57%) Frame = +2 Query: 761 KQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEIN 916 +Q W+E +PT + DI PV QQ I + E Y+ E+ + AE + P ++ N Sbjct: 118 EQYWMEFTPTSMMDI-PVGQQSVIYNGE--IYNQELTEVAELITSPEAIKNN 166
>Q7MPG4:RPOA_VIBVY DNA-directed RNA polymerase alpha chain - Vibrio vulnificus (strain| YJ016) Length = 330 Score = 32.7 bits (73), Expect = 3.4 Identities = 28/99 (28%), Positives = 44/99 (44%) Frame = +2 Query: 725 NQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGL 904 N E+ + +E + +V +S + D +VDA Y+ D++ EA Sbjct: 138 NAEIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDA-TYSPVDKIAYAVEA----AR 192 Query: 905 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 1021 VE D V +ET G + E I A T+L ++LDA Sbjct: 193 VEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDA 231
>Q8DE63:RPOA_VIBVU DNA-directed RNA polymerase alpha chain - Vibrio vulnificus| Length = 330 Score = 32.7 bits (73), Expect = 3.4 Identities = 28/99 (28%), Positives = 44/99 (44%) Frame = +2 Query: 725 NQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGL 904 N E+ + +E + +V +S + D +VDA Y+ D++ EA Sbjct: 138 NAEIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDA-TYSPVDKIAYAVEA----AR 192 Query: 905 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 1021 VE D V +ET G + E I A T+L ++LDA Sbjct: 193 VEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDA 231
>P73297:RPOA_SYNY3 DNA-directed RNA polymerase alpha chain - Synechocystis sp. (strain| PCC 6803) Length = 314 Score = 32.7 bits (73), Expect = 3.4 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Frame = +2 Query: 143 RELKDEYAKFELKDTD----ASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEF 298 R+ + +Y+KF L+ D ++ NALRRV+++ +P A+ + I +N EF Sbjct: 14 RKNQQQYSKFSLEPLDRGQGTTVGNALRRVLLSNLPGAAVTAIRIAG----VNHEF 65
>Q87SZ0:RPOA_VIBPA DNA-directed RNA polymerase alpha chain - Vibrio parahaemolyticus| Length = 330 Score = 32.3 bits (72), Expect = 4.4 Identities = 28/99 (28%), Positives = 44/99 (44%) Frame = +2 Query: 725 NQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGL 904 N E+ + +E + +V +S + D +VDA Y+ D++ EA Sbjct: 138 NAEIAMRIKVERGRGYVPASARIHNEEDERPIGRLLVDA-TYSPVDKIAYAVEA----AR 192 Query: 905 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 1021 VE D V +ET G + E I A T+L ++LDA Sbjct: 193 VEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDA 231
>Q5E889:RPOA_VIBF1 DNA-directed RNA polymerase alpha chain - Vibrio fischeri (strain| ATCC 700601 / ES114) Length = 329 Score = 32.3 bits (72), Expect = 4.4 Identities = 28/99 (28%), Positives = 44/99 (44%) Frame = +2 Query: 725 NQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGL 904 N E+ + +E + +V S+ + D +VDA Y+ D++ EA Sbjct: 137 NAEISMRIKVERGRGYVPSTARIHTEEDERPIGRLLVDA-TYSPVDKISYAVEA----AR 191 Query: 905 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 1021 VE D V +ET G + E I A T+L ++LDA Sbjct: 192 VEQRTDLDKLVIDMETNGTLDPEEAIRRAATILAEQLDA 230
>Q9RDV6:RPOA_MYCGA DNA-directed RNA polymerase alpha chain - Mycoplasma gallisepticum| Length = 325 Score = 32.0 bits (71), Expect = 5.8 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 8/77 (10%) Frame = +2 Query: 119 QRFPRVRIRELKDE----YAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIESN 274 Q+F R I +K++ Y K+ +K + ++ NALRRVM++ +P ++ ++I+ Sbjct: 2 QQFLRYNINVIKEDNDKNYGKYIVKPLEKGFGITLGNALRRVMLSHLPGSSVFALKIKG- 60 Query: 275 SSVLNDEFLAHRLGLIP 325 ++H G IP Sbjct: 61 --------ISHEFGFIP 69
>P43737:RPOA_HAEIN DNA-directed RNA polymerase alpha chain - Haemophilus influenzae| Length = 328 Score = 32.0 bits (71), Expect = 5.8 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 14/157 (8%) Frame = +2 Query: 593 LIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRI-------------NQE 733 L VK++ ++ L + + GIG P Y+ D+ I N Sbjct: 88 LAVKVQNKDDVIL-TLNKSGIG-------PVVAADITYDGDVEIVNPDHVICHLTDENAS 139 Query: 734 LMETLTLEEKQSWVE-SSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVE 910 + + ++ + +V SS T + P+ + +VDA Y+ + + EA VE Sbjct: 140 ISMRIRVQRGRGYVPASSRTHTQEERPIGR--LLVDA-CYSPVERIAYNVEA----ARVE 192 Query: 911 INAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 1021 D V +ET GA+ E I A T+L ++LDA Sbjct: 193 QRTDLDKLVIELETNGALEPEEAIRRAATILAEQLDA 229
>P46210:FLAA_AQUPY Flagellin - Aquifex pyrophilus| Length = 501 Score = 32.0 bits (71), Expect = 5.8 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = +2 Query: 830 IVDAEAYTYDDEVIKKAEAMGKP-GLVEINAKEDSFVFTVETTGAITAYELIMNAITVLR 1006 I+D E+YTYD I A + P G V I D + V T EL M+ +T+ Sbjct: 369 IIDDESYTYDFTGIAGAFGLTSPSGTVGIT---DLYAIDVTTN---EGAELAMDILTIAA 422 Query: 1007 QKLDAVR 1027 QK+D +R Sbjct: 423 QKVDEIR 429
>O75191:XYLB_HUMAN Xylulose kinase - Homo sapiens (Human)| Length = 527 Score = 31.6 bits (70), Expect = 7.6 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Frame = +2 Query: 590 ILIVKLRRGQELRLRAIARKGIGKDHAK--WSPAATVTFM-YEPDIRINQELMETLTLEE 760 I++ K++ + +A G G+ H W A PD+R++Q+L + ++ + Sbjct: 77 IILEKMKASGFEFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISD 136 Query: 761 KQSWVESSPT 790 W++SS T Sbjct: 137 CPVWMDSSTT 146
>O42804:XLNR_ASPNG Transcriptional activator xlnR - Aspergillus niger| Length = 875 Score = 31.6 bits (70), Expect = 7.6 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 7/71 (9%) Frame = +2 Query: 290 DEFLAHRLGLIPLTSSGAMSMRFSRDCD-------ACDGDGSCEHCSVEFHLAARATDSG 448 D + R + +SS + R SR CD CDG C HC +EF L Sbjct: 29 DPLVEARSAVRKTSSSAPVRRRISRACDQCNQLRTKCDGQHPCAHC-IEFGLTCEYARER 87 Query: 449 QTLEVTSTKDL 481 + S KDL Sbjct: 88 KKRGKASKKDL 98
>P57941:RPOA_PASMU DNA-directed RNA polymerase alpha chain - Pasteurella multocida| Length = 329 Score = 31.6 bits (70), Expect = 7.6 Identities = 23/64 (35%), Positives = 30/64 (46%) Frame = +2 Query: 830 IVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQ 1009 +VDA Y+ D + EA VE D V +ET G I E I A T+L + Sbjct: 172 LVDA-CYSPVDRIAYNVEA----ARVEQRTDLDKLVIELETNGTIDPEEAIRRAATILAE 226 Query: 1010 KLDA 1021 +LDA Sbjct: 227 QLDA 230
>Q890R0:RPOA_CLOTE DNA-directed RNA polymerase alpha chain - Clostridium tetani| Length = 315 Score = 31.6 bits (70), Expect = 7.6 Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 6/54 (11%) Frame = +2 Query: 128 PRVRIRELKDE--YAKFELKDTDA----SMANALRRVMIAEVPTVAIDLVEIES 271 P++ E+ + Y KF ++ + ++ NALRR++++ +P VA++ ++IE+ Sbjct: 7 PKIECIEMTENGSYGKFVVEPLERGYGITLGNALRRILLSSLPGVAVNSIKIEN 60
>P51011:LDHD_LEUMC D-lactate dehydrogenase - Leuconostoc mesenteroides subsp. cremoris| Length = 331 Score = 31.6 bits (70), Expect = 7.6 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = +2 Query: 479 LRSTDPKVCPVDQQREYQQALGNVDAYEPDAAGDHRGILIVKLRRGQELRLRAIARKGIG 658 LR+ D RE+ + NV Y P+A +H + + +L R R +A+ K I Sbjct: 75 LRNVGTDNIDFDAAREFNFNISNVPVYSPNAIAEHSMLQLSRLLR----RTKALDAK-IA 129 Query: 659 KDHAKWSP 682 K +W+P Sbjct: 130 KRDLRWAP 137
>Q661B8:RPOA_BORGA DNA-directed RNA polymerase alpha chain - Borrelia garinii| Length = 344 Score = 31.2 bits (69), Expect = 9.9 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Frame = +2 Query: 161 YAKFEL----KDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVLNDEFLAHRLGLIPL 328 Y KF + + ++ N LRRV+++ + AI + I+SN+ + + ++ LIP Sbjct: 27 YGKFTIYPFERGFGVTIGNTLRRVLLSSIEGYAITAMRIQSNNKDSSSKVVSSEFDLIPG 86 Query: 329 TSSGAMSM 352 S + + Sbjct: 87 VSEDTLEV 94 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 188,307,591 Number of extensions: 4119579 Number of successful extensions: 13314 Number of sequences better than 10.0: 53 Number of HSP's gapped: 13254 Number of HSP's successfully gapped: 56 Length of query: 432 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 316 Effective length of database: 68,868,219 Effective search space: 21762357204 Effective search space used: 21762357204 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
