ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf96n20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY823551.1| Pennisetum glaucum voltage dependent anion channel protein mRNA, complete cds Length = 1025 Score = 200 bits (101), Expect = 4e-48 Identities = 116/121 (95%) Strand = Plus / Plus Query: 84 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgctc 143 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1 atggccatgaagggacccggcctcttctccgacatcggcaagaaggccaaggatctgctc 60 Query: 144 accagggactacacctacgaccagaagctctccgtctccaccgtcagctcctccggagtg 203 || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 61 acgagggactacacctacgaccagaagctgaccgtctccaccgtcagctcctccggagtg 120 Query: 204 g 204 | Sbjct: 121 g 121
>gb|AF513381.1| Pennisetum glaucum PgPOR29 (PORIN) mRNA, complete cds; nuclear gene for mitochondrial product Length = 831 Score = 200 bits (101), Expect = 4e-48 Identities = 116/121 (95%) Strand = Plus / Plus Query: 84 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgctc 143 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1 atggccatgaagggacccggcctcttctccgacatcggcaagaaggccaaggatctgctc 60 Query: 144 accagggactacacctacgaccagaagctctccgtctccaccgtcagctcctccggagtg 203 || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 61 acgagggactacacctacgaccagaagctgaccgtctccaccgtcagctcctccggagtg 120 Query: 204 g 204 | Sbjct: 121 g 121
>ref|NM_001055836.1| Oryza sativa (japonica cultivar-group) Os03g0202200 (Os03g0202200) mRNA, complete cds Length = 1264 Score = 176 bits (89), Expect = 6e-41 Identities = 113/121 (93%) Strand = Plus / Plus Query: 84 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgctc 143 ||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||| Sbjct: 128 atggccatgaagggacccggcctcttctccgacattggcaagagggccaaggatctgctc 187 Query: 144 accagggactacacctacgaccagaagctctccgtctccaccgtcagctcctccggagtg 203 |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 188 accaaggactacacctatgaccagaagctgaccgtctccaccgtcagctcctccggagtg 247 Query: 204 g 204 | Sbjct: 248 g 248
>gb|AY224468.1| Oryza sativa (japonica cultivar-group) isolate 24162 porin-like protein mRNA, complete cds Length = 834 Score = 176 bits (89), Expect = 6e-41 Identities = 113/121 (93%) Strand = Plus / Plus Query: 84 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgctc 143 ||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||| Sbjct: 1 atggccatgaagggacccggcctcttctccgacattggcaagagggccaaggatctgctc 60 Query: 144 accagggactacacctacgaccagaagctctccgtctccaccgtcagctcctccggagtg 203 |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 61 accaaggactacacctatgaccagaagctgaccgtctccaccgtcagctcctccggagtg 120 Query: 204 g 204 | Sbjct: 121 g 121
>dbj|AK121020.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049E21, full insert sequence Length = 1265 Score = 176 bits (89), Expect = 6e-41 Identities = 113/121 (93%) Strand = Plus / Plus Query: 84 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgctc 143 ||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||| Sbjct: 129 atggccatgaagggacccggcctcttctccgacattggcaagagggccaaggatctgctc 188 Query: 144 accagggactacacctacgaccagaagctctccgtctccaccgtcagctcctccggagtg 203 |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 189 accaaggactacacctatgaccagaagctgaccgtctccaccgtcagctcctccggagtg 248 Query: 204 g 204 | Sbjct: 249 g 249
>gb|DQ244593.1| Zea mays clone 9483 mRNA sequence Length = 1217 Score = 125 bits (63), Expect = 2e-25 Identities = 105/118 (88%), Gaps = 2/118 (1%) Strand = Plus / Plus Query: 87 gccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgctcacc 146 |||||||||||||| ||||||||| |||||||||||||||||| |||||||| ||||| Sbjct: 113 gccatgaagggacccggcctcttctccgacatcggcaagaagg--aaggatctactcact 170 Query: 147 agggactacacctacgaccagaagctctccgtctccaccgtcagctcctccggagtgg 204 | |||||||||||||||| ||||||| ||| ||||||||| |||| |||| ||||||| Sbjct: 171 aaggactacacctacgactagaagctgtccatctccaccgccagcgcctctggagtgg 228
>gb|AY823552.1| Pennisetum glaucum voltage dependent anion channel protein gene, complete cds Length = 2967 Score = 125 bits (63), Expect = 2e-25 Identities = 72/75 (96%) Strand = Plus / Plus Query: 135 gatctgctcaccagggactacacctacgaccagaagctctccgtctccaccgtcagctcc 194 ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 145 gatctgctcacgagggactacacctacgaccagaagctgaccgtctccaccgtcagctcc 204 Query: 195 tccggagtggtaagg 209 ||||||||||||||| Sbjct: 205 tccggagtggtaagg 219 Score = 87.7 bits (44), Expect = 4e-14 Identities = 50/52 (96%) Strand = Plus / Plus Query: 84 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaagg 135 ||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct: 1 atggccatgaagggacccggcctcttctccgacatcggcaagaaggccaagg 52
>gb|AY105200.1| Zea mays PCO141157 mRNA sequence Length = 1411 Score = 123 bits (62), Expect = 7e-25 Identities = 98/110 (89%) Strand = Plus / Plus Query: 87 gccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgctcacc 146 |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| Sbjct: 245 gccatgaagggacccggcctcttctccgacatcggcaagaaggccaaggatctactcagt 304 Query: 147 agggactacacctacgaccagaagctctccgtctccaccgtcagctcctc 196 | ||||||||| |||||||||||||| || ||||||||| |||| |||| Sbjct: 305 aaggactacacttacgaccagaagctgaccatctccaccgccagcgcctc 354
>gb|DQ244654.1| Zea mays clone 9933 mRNA sequence Length = 1211 Score = 117 bits (59), Expect = 4e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 90 atgaagggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgctcaccagg 149 ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| | | Sbjct: 36 atgaagggacccggcctcttctccgacatcggcaagaaggccaaggatctactcagtaag 95 Query: 150 gactacacctacgaccagaagctctccgtctccaccgtcagctcctc 196 |||||||| |||||||||||||| || ||||||||| |||| |||| Sbjct: 96 gactacacttacgaccagaagctgaccatctccaccgccagcgcctc 142
>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009J13, from chromosome 3, complete sequence Length = 147205 Score = 117 bits (59), Expect = 4e-23 Identities = 71/75 (94%) Strand = Plus / Minus Query: 135 gatctgctcaccagggactacacctacgaccagaagctctccgtctccaccgtcagctcc 194 ||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 26103 gatctgctcaccaaggactacacctatgaccagaagctgaccgtctccaccgtcagctcc 26044 Query: 195 tccggagtggtaagg 209 ||||||||||||||| Sbjct: 26043 tccggagtggtaagg 26029 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Minus Query: 84 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaagg 135 ||||||||||||||||| ||||||||| ||||||| ||||||| |||||||| Sbjct: 26273 atggccatgaagggacccggcctcttctccgacattggcaagagggccaagg 26222
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 117 bits (59), Expect = 4e-23 Identities = 71/75 (94%) Strand = Plus / Minus Query: 135 gatctgctcaccagggactacacctacgaccagaagctctccgtctccaccgtcagctcc 194 ||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 5319150 gatctgctcaccaaggactacacctatgaccagaagctgaccgtctccaccgtcagctcc 5319091 Query: 195 tccggagtggtaagg 209 ||||||||||||||| Sbjct: 5319090 tccggagtggtaagg 5319076 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Minus Query: 84 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaagg 135 ||||||||||||||||| ||||||||| ||||||| ||||||| |||||||| Sbjct: 5319320 atggccatgaagggacccggcctcttctccgacattggcaagagggccaagg 5319269
>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006P09, complete sequence Length = 153950 Score = 117 bits (59), Expect = 4e-23 Identities = 71/75 (94%) Strand = Plus / Minus Query: 135 gatctgctcaccagggactacacctacgaccagaagctctccgtctccaccgtcagctcc 194 ||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 41021 gatctgctcaccaaggactacacctatgaccagaagctgaccgtctccaccgtcagctcc 40962 Query: 195 tccggagtggtaagg 209 ||||||||||||||| Sbjct: 40961 tccggagtggtaagg 40947 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Minus Query: 84 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaagg 135 ||||||||||||||||| ||||||||| ||||||| ||||||| |||||||| Sbjct: 41191 atggccatgaagggacccggcctcttctccgacattggcaagagggccaagg 41140
>gb|AY104040.1| Zea mays PCO141155 mRNA sequence Length = 973 Score = 115 bits (58), Expect = 2e-22 Identities = 103/117 (88%), Gaps = 2/117 (1%) Strand = Plus / Plus Query: 87 gccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgctcacc 146 |||||||||||||| ||||||||| |||||||||||| ||||| |||||||| |||| Sbjct: 157 gccatgaagggacccggcctcttctccgacatcggcaggaagg--aaggatctactcatt 214 Query: 147 agggactacacctacgaccagaagctctccgtctccaccgtcagctcctccggagtg 203 | |||||||||||||||||||||||| ||| ||||||||| |||| |||| |||||| Sbjct: 215 aaggactacacctacgaccagaagctgtccatctccaccgccagcgcctctggagtg 271
>emb|X82148.1|TAVDAC3 T.aestivum VDAC3 mRNA for voltage dependent anion channel Length = 1208 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 99 ccgggcctcttcaccgacatcggcaagaaggccaaggatctgctcaccagggactac 155 |||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||| Sbjct: 85 ccgggcctctacaccgacatcggcaagaagaccagagatctgctctacagggactac 141
>emb|X82149.1|TAVDAC2 T.aestivum VDAC2 mRNA for voltage dependent anion channel Length = 1174 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 115 acatcggcaagaaggccaaggatctgctcaccagggactacacc 158 |||||||||||||||||| ||||| |||| ||||||||||||| Sbjct: 17 acatcggcaagaaggccagagatctcctcaacagggactacacc 60
>gb|BT016491.1| Zea mays clone Contig324 mRNA sequence Length = 1330 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 96 ggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgct 142 ||||| ||||||| |||||| |||||||||||| ||| ||||||||| Sbjct: 159 ggaccaggcctctacaccgagatcggcaagaagaccagggatctgct 205
>gb|AF178951.1|AF178951 Zea mays voltage-dependent anion channel protein 1b (vdac1b) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1175 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 96 ggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgct 142 ||||| ||||||| |||||| |||||||||||| ||| ||||||||| Sbjct: 154 ggaccaggcctctacaccgagatcggcaagaagaccagggatctgct 200
>gb|AF093538.1|AF093538 Zea mays voltage-dependent anion-selective channel protein mRNA, partial cds Length = 321 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 96 ggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgct 142 ||||| ||||||| |||||| |||||||||||| ||| ||||||||| Sbjct: 7 ggaccaggcctctacaccgagatcggcaagaagaccagggatctgct 53
>gb|BT016888.1| Zea mays clone Contig721 mRNA sequence Length = 1209 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 102 ggcctcttcaccgacatcggcaagaaggccaaggatctgct 142 ||||||| |||||| |||||||||||| ||| ||||||||| Sbjct: 1088 ggcctctacaccgagatcggcaagaagaccagggatctgct 1048
>emb|X73429.1|ZMPOR1 Z.mays mRNA for porin Length = 1810 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 102 ggcctcttcaccgacatcggcaagaaggccaaggatctgct 142 ||||||| ||||||||||||||||||| ||| |||||||| Sbjct: 21 ggcctctacaccgacatcggcaagaagaccagagatctgct 61
>gb|AF178950.1|AF178950 Zea mays voltage-dependent anion channel protein 1a (vdac1a) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1179 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 102 ggcctcttcaccgacatcggcaagaaggccaaggatctgct 142 ||||||| |||||| |||||||||||| ||| ||||||||| Sbjct: 105 ggcctctacaccgagatcggcaagaagaccagggatctgct 145
>gb|AY109870.1| Zea mays CL2099_1 mRNA sequence Length = 1799 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 102 ggcctcttcaccgacatcggcaagaaggccaaggatctgct 142 ||||||| ||||||||||||||||||| ||| |||||||| Sbjct: 21 ggcctctacaccgacatcggcaagaagaccagagatctgct 61
>gb|AY106124.1| Zea mays PCO123686 mRNA sequence Length = 926 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 102 ggcctcttcaccgacatcggcaagaaggccaaggatctgct 142 ||||||| ||||||||||||||||||| ||| |||||||| Sbjct: 141 ggcctctacaccgacatcggcaagaagaccagagatctgct 181
>gb|AY104870.1| Zea mays PCO081914 mRNA sequence Length = 1445 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 102 ggcctcttcaccgacatcggcaagaaggccaaggatctgct 142 ||||||| |||||| |||||||||||| ||| ||||||||| Sbjct: 216 ggcctctacaccgagatcggcaagaagaccagggatctgct 256
>gb|BT025802.1| Arabidopsis thaliana At5g67500 mRNA, complete cds Length = 831 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Plus Query: 105 ctcttcaccgacatcggcaagaaggccaaggatctg 140 ||||||||||| ||||||||||| ||||| |||||| Sbjct: 19 ctcttcaccgatatcggcaagaaagccaaagatctg 54
>ref|NM_126150.2| Arabidopsis thaliana voltage-gated ion-selective channel (AT5G67500) mRNA, complete cds Length = 1251 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Plus Query: 105 ctcttcaccgacatcggcaagaaggccaaggatctg 140 ||||||||||| ||||||||||| ||||| |||||| Sbjct: 79 ctcttcaccgatatcggcaagaaagccaaagatctg 114
>gb|AY085100.1| Arabidopsis thaliana clone 12964 mRNA, complete sequence Length = 1106 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Plus Query: 105 ctcttcaccgacatcggcaagaaggccaaggatctg 140 ||||||||||| ||||||||||| ||||| |||||| Sbjct: 79 ctcttcaccgatatcggcaagaaagccaaagatctg 114
>emb|BX831892.1|CNS09ZOZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH37ZD11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1000 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Plus Query: 105 ctcttcaccgacatcggcaagaaggccaaggatctg 140 ||||||||||| ||||||||||| ||||| |||||| Sbjct: 60 ctcttcaccgatatcggcaagaaagccaaagatctg 95
>gb|DQ245205.1| Zea mays clone 13766 mRNA sequence Length = 1394 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 102 ggcctcttcaccgacatcggcaagaag 128 ||||||| ||||||||||||||||||| Sbjct: 70 ggcctctacaccgacatcggcaagaag 96
>emb|CT828644.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA035I15, full insert sequence Length = 1118 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Plus Query: 105 ctcttcaccgacatcggcaagaaggccaaggatctgctcaccagggactac 155 |||| ||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 87 ctctacaccgacatcggcaagaagaccagagatctgctttacagggactac 137
>emb|CT827969.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119P17, full insert sequence Length = 1172 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Plus Query: 117 atcggcaagaaggccaaggatctgctcaccagggactac 155 |||||||||||||||| ||||||||| |||||||||| Sbjct: 130 atcggcaagaaggccagggatctgctgtacagggactac 168
>ref|NM_001069518.1| Oryza sativa (japonica cultivar-group) Os09g0361400 (Os09g0361400) mRNA, complete cds Length = 1242 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Plus Query: 117 atcggcaagaaggccaaggatctgctcaccagggactac 155 |||||||||||||||| ||||||||| |||||||||| Sbjct: 131 atcggcaagaaggccagggatctgctgtacagggactac 169
>ref|NM_001049968.1| Oryza sativa (japonica cultivar-group) Os01g0588200 (Os01g0588200) mRNA, complete cds Length = 1215 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Plus Query: 105 ctcttcaccgacatcggcaagaaggccaaggatctgctcaccagggactac 155 |||| ||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 145 ctctacaccgacatcggcaagaagaccagagatctgctttacagggactac 195
>dbj|AK104419.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-B06, full insert sequence Length = 1151 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Plus Query: 105 ctcttcaccgacatcggcaagaaggccaaggatctgctcaccagggactac 155 |||| ||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 91 ctctacaccgacatcggcaagaagaccagagatctgctttacagggactac 141
>dbj|AK104055.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-B09, full insert sequence Length = 1160 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Plus Query: 105 ctcttcaccgacatcggcaagaaggccaaggatctgctcaccagggactac 155 |||| ||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 102 ctctacaccgacatcggcaagaagaccagagatctgctttacagggactac 152
>dbj|AK072129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126C04, full insert sequence Length = 3071 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Plus Query: 117 atcggcaagaaggccaaggatctgctcaccagggactac 155 |||||||||||||||| ||||||||| |||||||||| Sbjct: 111 atcggcaagaaggccagggatctgctgtacagggactac 149
>dbj|AK070745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068C08, full insert sequence Length = 1216 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Plus Query: 105 ctcttcaccgacatcggcaagaaggccaaggatctgctcaccagggactac 155 |||| ||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 146 ctctacaccgacatcggcaagaagaccagagatctgctttacagggactac 196
>dbj|AK061261.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-C01, full insert sequence Length = 1125 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Plus Query: 117 atcggcaagaaggccaaggatctgctcaccagggactac 155 |||||||||||||||| ||||||||| |||||||||| Sbjct: 117 atcggcaagaaggccagggatctgctgtacagggactac 155
>dbj|AK060652.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H05, full insert sequence Length = 1242 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Plus Query: 117 atcggcaagaaggccaaggatctgctcaccagggactac 155 |||||||||||||||| ||||||||| |||||||||| Sbjct: 131 atcggcaagaaggccagggatctgctgtacagggactac 169
>emb|Y18104.1|OSA18104 Oryza sativa mRNA for voltage-dependent anion channel Length = 1093 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Plus Query: 117 atcggcaagaaggccaaggatctgctcaccagggactac 155 |||||||||||||||| ||||||||| |||||||||| Sbjct: 54 atcggcaagaaggccagggatctgctgtacagggactac 92
>emb|AJ251563.1|OSA251563 Oryza sativa mRNA for voltage-dependent anion channel (VDAC3 gene) Length = 1148 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Plus Query: 105 ctcttcaccgacatcggcaagaaggccaaggatctgctcaccagggactac 155 |||| ||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 86 ctctacaccgacatcggcaagaagaccagagatctgctttacagggactac 136
>emb|X77733.1|TAVDAC1 T.aestivum VDAC 1 mRNA Length = 1159 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 117 atcggcaagaaggccaaggatct 139 ||||||||||||||||||||||| Sbjct: 79 atcggcaagaaggccaaggatct 101
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 203 ggtaaggatcccgtcccgctcc 224 |||||||||||||||||||||| Sbjct: 8738063 ggtaaggatcccgtcccgctcc 8738042
>gb|AY316737.1| Lotus corniculatus var. japonicus VDAC1.1 mRNA, complete cds Length = 1203 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Plus Query: 105 ctcttcaccgacatcggcaagaaggccaaggatctgct 142 |||| ||| |||||||||||||| |||| ||||||||| Sbjct: 98 ctctacactgacatcggcaagaaagccagggatctgct 135
>gb|AC010020.7| Drosophila melanogaster 3L BAC RP98-26I3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 166857 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 203 ggtaaggatcccgtcccgctcc 224 |||||||||||||||||||||| Sbjct: 88205 ggtaaggatcccgtcccgctcc 88226
>gb|CP000390.1| Mesorhizobium sp. BNC1, complete genome Length = 4412446 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 111 accgacatcggcaagaaggccaagg 135 ||||| ||||||||||||||||||| Sbjct: 1785377 accgagatcggcaagaaggccaagg 1785353
>gb|AC146856.8| Medicago truncatula clone mth2-16l23, complete sequence Length = 145382 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 93 aagggaccgggcctcttcaccgacatcggcaagaaggccaa 133 ||||||||||| |||| | |||| ||||||||||| ||||| Sbjct: 122049 aagggaccgggtctctactccgatatcggcaagaaagccaa 122089
>emb|CR380953.1| Candida glabrata strain CBS138 chromosome G complete sequence Length = 992211 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 tctccgtctccaccgtcagct 192 ||||||||||||||||||||| Sbjct: 129374 tctccgtctccaccgtcagct 129394
>dbj|AB013390.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9I9 Length = 51860 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 105 ctcttcaccgacatcggcaagaaggccaa 133 ||||||||||| ||||||||||| ||||| Sbjct: 14407 ctcttcaccgatatcggcaagaaagccaa 14435
>ref|XM_446420.1| Candida glabrata CBS138, CAGL0G01342g partial mRNA Length = 3231 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 tctccgtctccaccgtcagct 192 ||||||||||||||||||||| Sbjct: 37 tctccgtctccaccgtcagct 17
>gb|AC188444.2| Gallus gallus BAC clone CH261-78K2 from chromosome z, complete sequence Length = 176912 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 gtattgatgttagtgttttg 404 |||||||||||||||||||| Sbjct: 48156 gtattgatgttagtgttttg 48175
>gb|DQ058201.1| Trifolium pratense clone tp44 microsatellite sequence Length = 275 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 93 aagggaccgggcctcttcaccgacatcggcaagaaggcca 132 ||||||||||| |||| | |||| ||||||||||| |||| Sbjct: 133 aagggaccgggtctctactccgatatcggcaagaaagcca 94
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 ctcttcaccgacatcggcaagaag 128 |||| ||||||||||||||||||| Sbjct: 22906641 ctctacaccgacatcggcaagaag 22906618
>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0700A11 Length = 136321 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 ctcttcaccgacatcggcaagaag 128 |||| ||||||||||||||||||| Sbjct: 110198 ctctacaccgacatcggcaagaag 110175
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 acacctacgaccagaagctc 173 |||||||||||||||||||| Sbjct: 211083 acacctacgaccagaagctc 211102
>emb|AJ301641.1|FRU301641 Fugu rubripes ORF1 (partial), ORF2-4 DNA and lsm4 gene Length = 36154 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 ctctccgtctccaccgtcagctcc 194 |||||| ||||||||||||||||| Sbjct: 1582 ctctccttctccaccgtcagctcc 1605
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ctcttcaccgacatcggcaa 124 |||||||||||||||||||| Sbjct: 2685151 ctcttcaccgacatcggcaa 2685170
>ref|XM_954597.1| Neurospora crassa OR74A hypothetical protein (NCU09579.1) partial mRNA Length = 1062 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 ccaccgtcagctcctccgga 200 |||||||||||||||||||| Sbjct: 751 ccaccgtcagctcctccgga 732
>emb|BX841617.1|CNS09YKR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB22ZF03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1039 Score = 40.1 bits (20), Expect = 8.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 105 ctcttcaccgacatcggcaagaaggccaaggatctg 140 ||||||||||| |||||||||| ||||| |||||| Sbjct: 38 ctcttcaccgatatcggcaagatagccaaagatctg 73
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ctacgaccagaagctctccg 177 |||||||||||||||||||| Sbjct: 1976233 ctacgaccagaagctctccg 1976214
>ref|XM_764947.1| Giardia lamblia ATCC 50803 pyruvate ferredoxin oxidoreductase (GLP_77_30661_27062) partial mRNA Length = 3600 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 aggccaaggatctgctcacc 146 |||||||||||||||||||| Sbjct: 2915 aggccaaggatctgctcacc 2934 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 65,497,458 Number of extensions: 3090384 Number of successful extensions: 51028 Number of sequences better than 10.0: 61 Number of HSP's gapped: 51026 Number of HSP's successfully gapped: 65 Length of query: 573 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 551 Effective length of database: 18,508,616,841 Effective search space: 10198247879391 Effective search space used: 10198247879391 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
