Clone Information

BLAST Search Result

Clone Name	FLbaf99a12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_001065084.1\| Oryza sativa (japonica cultivar-group) Os06g...	194	3e-46
2	dbj\|AK100379.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	194	3e-46
3	emb\|CT832610.1\| Oryza sativa (indica cultivar-group) cDNA clone:...	192	1e-45
4	emb\|CT831198.1\| Oryza sativa (indica cultivar-group) cDNA clone:...	192	1e-45
5	dbj\|AK069893.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	186	7e-44
6	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	115	2e-22
7	dbj\|AP003634.3\| Oryza sativa (japonica cultivar-group) genomic D...	115	2e-22
8	emb\|BX927069.11\| Zebrafish DNA sequence from clone DKEY-24C22 in...	48	0.042
9	gb\|AE014134.5\| Drosophila melanogaster chromosome 2L, complete s...	46	0.17
10	gb\|AC163354.3\| Mus musculus BAC clone RP23-49E21 from chromosome...	46	0.17
11	gb\|AC090046.10\| Mus musculus chromosome 6, clone RP23-82P24, com...	46	0.17
12	gb\|AC121977.3\| Mus musculus BAC clone RP24-287A16 from chromosom...	46	0.17
13	gb\|AC131205.3\| Homo sapiens 12 BAC RP11-185H22 (Roswell Park Can...	46	0.17
14	gb\|AC164626.6\| Mus musculus 6 BAC RP23-472D18 (Roswell Park Canc...	46	0.17
15	gb\|AC104630.1\| Drosophila melanogaster, chromosome 2L, region 22...	46	0.17
16	gb\|AC092188.1\|AC092188 Drosophila melanogaster, chromosome 2L, r...	46	0.17
17	gb\|AC004445.1\|AC004445 Drosophila melanogaster DNA sequence (P1 ...	46	0.17
18	gb\|AC113320.7\| Mus musculus chromosome 6, clone RP23-445E16, com...	44	0.65
19	gb\|AC137119.7\| Mus musculus chromosome 6, clone RP23-252K4, comp...	44	0.65
20	ref\|XM_761198.1\| Theileria parva strain Muguga chromosome 1 hypo...	44	0.65
21	emb\|BX255896.4\| Zebrafish DNA sequence from clone CH211-249O11 i...	44	0.65
22	dbj\|AP001554.6\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	44	0.65
23	gb\|AC190363.3\| Atelerix albiventris clone LB4-307O5, complete se...	42	2.6
24	gb\|AC188946.3\| Gallus gallus BAC clone CH261-68C18 from chromoso...	42	2.6
25	gb\|AE014298.4\| Drosophila melanogaster chromosome X, complete se...	42	2.6
26	gb\|AC153729.1\| Mus musculus BAC RP23-88C11 (Roswell Park Cancer...	42	2.6
27	gb\|AE014842.1\| Plasmodium falciparum 3D7 chromosome 11 section 7...	42	2.6
28	gb\|AY020852.1\| Oryza sativa microsatellite MRG3177 containing (T...	42	2.6
29	gb\|AC113968.12\| Mus musculus chromosome 8, clone RP23-120M17, co...	42	2.6
30	gb\|AC009256.9\| Drosophila melanogaster clone BACR03G18, complete...	42	2.6
31	gb\|AY362772.1\| Ovis aries T-cell receptor gene, Vgamma6 and Jgam...	42	2.6
32	gb\|AC109501.21\| Mus musculus chromosome 17, clone RP23-449E17, c...	42	2.6
33	gb\|AC122184.4\| Mus musculus BAC clone RP23-16C12 from chromosome...	42	2.6
34	gb\|CP000267.1\| Rhodoferax ferrireducens DSM 15236, complete genome	42	2.6
35	gb\|AC136628.2\| Homo sapiens chromosome 5 clone RP11-798K23, comp...	42	2.6
36	gb\|AC026231.4\| Mus musculus strain C57BL6/J chromosome 5 clone R...	42	2.6
37	emb\|CR318633.23\| Zebrafish DNA sequence from clone CH211-117B1 i...	42	2.6
38	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.6
39	gb\|AC019193.7\| Homo sapiens BAC clone RP11-335L23 from 4, comple...	42	2.6
40	emb\|AL645730.10\| Human DNA sequence from clone RP11-93G23 on chr...	42	2.6
41	emb\|AL589678.9\| Human DNA sequence from clone RP11-74C3 on chrom...	42	2.6
42	gb\|AC160393.2\| Mus musculus BAC clone RP23-136M3 from chromosome...	42	2.6
43	emb\|CR932807.1\| Mus musculus chromosome 2, clone ResGen-172B22 s...	42	2.6
44	emb\|CR932805.1\| Mus musculus chromosome 2, clone ResGen-283N17 s...	42	2.6
45	gb\|AC010744.7\| Homo sapiens BAC clone RP11-548D17 from 2, comple...	42	2.6
46	dbj\|AP005606.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.6
47	dbj\|AP005164.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.6
48	dbj\|AP005159.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.6
49	emb\|BX510644.3\| Zebrafish DNA sequence from clone CH211-153L6 in...	42	2.6
50	gb\|AC113425.2\| Homo sapiens chromosome 5 clone RP11-626B22, comp...	42	2.6
51	emb\|BX284619.11\| Zebrafish DNA sequence from clone DKEY-251E24 i...	42	2.6
52	emb\|BX248503.7\| Zebrafish DNA sequence from clone CH211-232M7 in...	42	2.6
53	gb\|AC154823.2\| Mus musculus BAC clone RP24-538J1 from 17, comple...	42	2.6
54	dbj\|AP001831.5\| Homo sapiens genomic DNA, chromosome 11q clone:R...	42	2.6
55	dbj\|AP003094.2\| Homo sapiens genomic DNA, chromosome 11q clone:R...	42	2.6
56	ref\|NM_001017134.2\| Xenopus tropicalis zinc finger protein 259 (...	42	2.6
57	gb\|AE016877.1\| Bacillus cereus ATCC 14579, complete genome	42	2.6
58	ref\|XM_667248.1\| Plasmodium berghei strain ANKA hypothetical pro...	42	2.6
59	emb\|BX005212.7\| Zebrafish DNA sequence from clone DKEY-221H2 in ...	42	2.6
60	gb\|AF016591.1\|AF016591 Homo sapiens survival motor neuron pseudo...	42	2.6
61	emb\|AL928877.6\| Mouse DNA sequence from clone RP23-52D18 on chro...	42	2.6
62	gb\|AC170603.2\| Mus musculus BAC clone RP23-140J10 from chromosom...	42	2.6
63	gb\|AC092956.5\| Homo sapiens 3 BAC RP11-648O5 (Roswell Park Cance...	42	2.6

>ref|NM_001065084.1| Oryza sativa (japonica cultivar-group) Os06g0711100 (Os06g0711100)
            mRNA, complete cds
          Length = 2369
 Score =  194 bits (98), Expect = 3e-46
 Identities = 193/222 (86%), Gaps = 2/222 (0%)
 Strand = Plus / Plus

                                                                        
Query: 59   gtgcaaaattggaaggtcgatccgaggtgcccaaatgcgggcaacccgttccatatatgc 118
            ||||| || |||||||| |||||||||||||||||||||  |||||| ||||||||||||
Sbjct: 909  gtgcagaactggaaggtggatccgaggtgcccaaatgcgtccaacccattccatatatgc 968

                                                                        
Query: 119  gcccagtactgtttcgatcatttgaatgaagcggcatca-acacctacaagcaagccaga 177
            ||||| ||||| || ||||||||||||||| |||  ||| | |  ||||||||| |||||
Sbjct: 969  gcccaatactgctttgatcatttgaatgaaacggg-tcagaaagatacaagcaaaccaga 1027

                                                                        
Query: 178  ctcaagaaagggaaaggctgtcatgaaagcggagccaacaggagaaatcaatcctgattg 237
            |||||| ||||| || |||||  ||||||| |||| ||||||||||||||||||||||||
Sbjct: 1028 ctcaaggaagggcaaagctgttgtgaaagcagagcaaacaggagaaatcaatcctgattg 1087

                                                      
Query: 238  tgtcaatgcatccaatccttaccacaagtgtggagaatattg 279
            ||| ||||| |||||||| |||||||||||||| ||| ||||
Sbjct: 1088 tgtgaatgcgtccaatccctaccacaagtgtggggaacattg 1129

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>dbj|AK100379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085C01, full
            insert sequence
          Length = 2371

 Score =  194 bits (98), Expect = 3e-46
 Identities = 193/222 (86%), Gaps = 2/222 (0%)
 Strand = Plus / Plus

                                                                        
Query: 59   gtgcaaaattggaaggtcgatccgaggtgcccaaatgcgggcaacccgttccatatatgc 118
            ||||| || |||||||| |||||||||||||||||||||  |||||| ||||||||||||
Sbjct: 910  gtgcagaactggaaggtggatccgaggtgcccaaatgcgtccaacccattccatatatgc 969

                                                                        
Query: 119  gcccagtactgtttcgatcatttgaatgaagcggcatca-acacctacaagcaagccaga 177
            ||||| ||||| || ||||||||||||||| |||  ||| | |  ||||||||| |||||
Sbjct: 970  gcccaatactgctttgatcatttgaatgaaacggg-tcagaaagatacaagcaaaccaga 1028

                                                                        
Query: 178  ctcaagaaagggaaaggctgtcatgaaagcggagccaacaggagaaatcaatcctgattg 237
            |||||| ||||| || |||||  ||||||| |||| ||||||||||||||||||||||||
Sbjct: 1029 ctcaaggaagggcaaagctgttgtgaaagcagagcaaacaggagaaatcaatcctgattg 1088

                                                      
Query: 238  tgtcaatgcatccaatccttaccacaagtgtggagaatattg 279
            ||| ||||| |||||||| |||||||||||||| ||| ||||
Sbjct: 1089 tgtgaatgcgtccaatccctaccacaagtgtggggaacattg 1130

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>emb|CT832610.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122O08, full
            insert sequence
          Length = 1545

 Score =  192 bits (97), Expect = 1e-45
 Identities = 195/225 (86%), Gaps = 2/225 (0%)
 Strand = Plus / Plus

                                                                        
Query: 56   gtggtgcaaaattggaaggtcgatccgaggtgcccaaatgcgggcaacccgttccatata 115
            |||||||| || |||||||| |||||||||||||||||||||  |||||| |||||||||
Sbjct: 964  gtggtgcagaactggaaggtggatccgaggtgcccaaatgcgtccaacccattccatata 1023

                                                                        
Query: 116  tgcgcccagtactgtttcgatcatttgaatgaagcggcatca-acacctacaagcaagcc 174
            |||||||| ||||| || ||||||||||| ||| |||  ||| | |  ||||||||| ||
Sbjct: 1024 tgcgcccaatactgctttgatcatttgaacgaaacggg-tcagaaagatacaagcaaacc 1082

                                                                        
Query: 175  agactcaagaaagggaaaggctgtcatgaaagcggagccaacaggagaaatcaatcctga 234
            ||||||||| ||||| || |||||  ||||||| |||| |||||||||||||||||||||
Sbjct: 1083 agactcaaggaagggcaaagctgttgtgaaagcagagcaaacaggagaaatcaatcctga 1142

                                                         
Query: 235  ttgtgtcaatgcatccaatccttaccacaagtgtggagaatattg 279
            |||||| ||||| |||||||| |||||||||||||| ||| ||||
Sbjct: 1143 ttgtgtgaatgcgtccaatccctaccacaagtgtggggaacattg 1187

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>emb|CT831198.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129G10, full
            insert sequence
          Length = 1474

 Score =  192 bits (97), Expect = 1e-45
 Identities = 195/225 (86%), Gaps = 2/225 (0%)
 Strand = Plus / Plus

                                                                        
Query: 56   gtggtgcaaaattggaaggtcgatccgaggtgcccaaatgcgggcaacccgttccatata 115
            |||||||| || |||||||| |||||||||||||||||||||  |||||| |||||||||
Sbjct: 900  gtggtgcagaactggaaggtggatccgaggtgcccaaatgcgtccaacccattccatata 959

                                                                        
Query: 116  tgcgcccagtactgtttcgatcatttgaatgaagcggcatca-acacctacaagcaagcc 174
            |||||||| ||||| || ||||||||||| ||| |||  ||| | |  ||||||||| ||
Sbjct: 960  tgcgcccaatactgctttgatcatttgaacgaaacggg-tcagaaagatacaagcaaacc 1018

                                                                        
Query: 175  agactcaagaaagggaaaggctgtcatgaaagcggagccaacaggagaaatcaatcctga 234
            ||||||||| ||||| || |||||  ||||||| |||| |||||||||||||||||||||
Sbjct: 1019 agactcaaggaagggcaaagctgttgtgaaagcagagcaaacaggagaaatcaatcctga 1078

                                                         
Query: 235  ttgtgtcaatgcatccaatccttaccacaagtgtggagaatattg 279
            |||||| ||||| |||||||| |||||||||||||| ||| ||||
Sbjct: 1079 ttgtgtgaatgcgtccaatccctaccacaagtgtggggaacattg 1123

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>dbj|AK069893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039F13, full
            insert sequence
          Length = 1528

 Score =  186 bits (94), Expect = 7e-44
 Identities = 192/222 (86%), Gaps = 2/222 (0%)
 Strand = Plus / Plus

                                                                        
Query: 59   gtgcaaaattggaaggtcgatccgaggtgcccaaatgcgggcaacccgttccatatatgc 118
            ||||| || |||||||| |||||||||||||||||||||  |||||| ||||||||| ||
Sbjct: 954  gtgcagaactggaaggtggatccgaggtgcccaaatgcgtccaacccattccatatacgc 1013

                                                                        
Query: 119  gcccagtactgtttcgatcatttgaatgaagcggcatca-acacctacaagcaagccaga 177
            ||||| ||||| || ||||||||||||||| |||  ||| | |  ||||||||| |||||
Sbjct: 1014 gcccaatactgctttgatcatttgaatgaaacggg-tcagaaagatacaagcaaaccaga 1072

                                                                        
Query: 178  ctcaagaaagggaaaggctgtcatgaaagcggagccaacaggagaaatcaatcctgattg 237
            |||||| ||||| || |||||  ||||||| |||| ||||||||||||||||||||||||
Sbjct: 1073 ctcaaggaagggcaaagctgttgtgaaagcagagcaaacaggagaaatcaatcctgattg 1132

                                                      
Query: 238  tgtcaatgcatccaatccttaccacaagtgtggagaatattg 279
            ||| ||||| |||||||| |||||||||||||| ||| ||||
Sbjct: 1133 tgtgaatgcgtccaatccctaccacaagtgtggggaacattg 1174

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score =  115 bits (58), Expect = 2e-22
 Identities = 94/106 (88%)
 Strand = Plus / Plus

                                                                            
Query: 174      cagactcaagaaagggaaaggctgtcatgaaagcggagccaacaggagaaatcaatcctg 233
                |||||||||| ||||| || |||||  ||||||| |||| ||||||||||||||||||||
Sbjct: 29555786 cagactcaaggaagggcaaagctgttgtgaaagcagagcaaacaggagaaatcaatcctg 29555845

                                                              
Query: 234      attgtgtcaatgcatccaatccttaccacaagtgtggagaatattg 279
                ||||||| ||||| |||||||| |||||||||||||| ||| ||||
Sbjct: 29555846 attgtgtgaatgcgtccaatccctaccacaagtgtggggaacattg 29555891



 Score =  107 bits (54), Expect = 5e-20
 Identities = 81/90 (90%)
 Strand = Plus / Plus

                                                                            
Query: 59       gtgcaaaattggaaggtcgatccgaggtgcccaaatgcgggcaacccgttccatatatgc 118
                ||||| || |||||||| |||||||||||||||||||||  |||||| ||||||||||||
Sbjct: 29555577 gtgcagaactggaaggtggatccgaggtgcccaaatgcgtccaacccattccatatatgc 29555636

                                              
Query: 119      gcccagtactgtttcgatcatttgaatgaa 148
                ||||| ||||| || |||||||||||||||
Sbjct: 29555637 gcccaatactgctttgatcatttgaatgaa 29555666

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>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0655A07
          Length = 172473

 Score =  115 bits (58), Expect = 2e-22
 Identities = 94/106 (88%)
 Strand = Plus / Plus

                                                                          
Query: 174    cagactcaagaaagggaaaggctgtcatgaaagcggagccaacaggagaaatcaatcctg 233
              |||||||||| ||||| || |||||  ||||||| |||| ||||||||||||||||||||
Sbjct: 120292 cagactcaaggaagggcaaagctgttgtgaaagcagagcaaacaggagaaatcaatcctg 120351

                                                            
Query: 234    attgtgtcaatgcatccaatccttaccacaagtgtggagaatattg 279
              ||||||| ||||| |||||||| |||||||||||||| ||| ||||
Sbjct: 120352 attgtgtgaatgcgtccaatccctaccacaagtgtggggaacattg 120397



 Score =  107 bits (54), Expect = 5e-20
 Identities = 81/90 (90%)
 Strand = Plus / Plus

                                                                          
Query: 59     gtgcaaaattggaaggtcgatccgaggtgcccaaatgcgggcaacccgttccatatatgc 118
              ||||| || |||||||| |||||||||||||||||||||  |||||| ||||||||||||
Sbjct: 120083 gtgcagaactggaaggtggatccgaggtgcccaaatgcgtccaacccattccatatatgc 120142

                                            
Query: 119    gcccagtactgtttcgatcatttgaatgaa 148
              ||||| ||||| || |||||||||||||||
Sbjct: 120143 gcccaatactgctttgatcatttgaatgaa 120172

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>emb|BX927069.11| Zebrafish DNA sequence from clone DKEY-24C22 in linkage group 23,
              complete sequence
          Length = 162588

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 473    atttttctttacatctatatacatatacatat 504
              |||||||||||||| |||||| ||||||||||
Sbjct: 124257 atttttctttacatatatatatatatacatat 124226

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>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence
          Length = 23011544

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 482     tacatctatatacatatacatattcttcatg 512
               ||||| ||||||||||||||||||| |||||
Sbjct: 1634812 tacatatatatacatatacatattcatcatg 1634782

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>gb|AC163354.3| Mus musculus BAC clone RP23-49E21 from chromosome 12, complete sequence
          Length = 248060

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                                 
Query: 472    tatttttc-tttacatctatatacatatacatatt 505
              |||||||| ||||||| ||||||||||||||||||
Sbjct: 162661 tatttttcatttacatatatatacatatacatatt 162627

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>gb|AC090046.10| Mus musculus chromosome 6, clone RP23-82P24, complete sequence
          Length = 179099

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 470   tatatttttctttacatctatatacatatacatat 504
             |||||||||||||| || |||||||||||| ||||
Sbjct: 11410 tatatttttctttatatatatatacatatatatat 11444

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>gb|AC121977.3| Mus musculus BAC clone RP24-287A16 from chromosome 6, complete sequence
          Length = 186279

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 470   tatatttttctttacatctatatacatatacatat 504
             |||||||||||||| || |||||||||||| ||||
Sbjct: 84764 tatatttttctttatatatatatacatatatatat 84730

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>gb|AC131205.3| Homo sapiens 12 BAC RP11-185H22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 110790

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 482   tacatctatatacatatacatat 504
             |||||||||||||||||||||||
Sbjct: 44512 tacatctatatacatatacatat 44490

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>gb|AC164626.6| Mus musculus 6 BAC RP23-472D18 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 190308

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 470   tatatttttctttacatctatatacatatacatat 504
             |||||||||||||| || |||||||||||| ||||
Sbjct: 94651 tatatttttctttatatatatatacatatatatat 94685

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>gb|AC104630.1| Drosophila melanogaster, chromosome 2L, region 22B-22C, BAC clone
              BACR19B15, complete sequence
          Length = 180088

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 482    tacatctatatacatatacatattcttcatg 512
              ||||| ||||||||||||||||||| |||||
Sbjct: 120588 tacatatatatacatatacatattcatcatg 120618

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>gb|AC092188.1|AC092188 Drosophila melanogaster, chromosome 2L, region 22B-22C, BAC clone
             BACR28O09, complete sequence
          Length = 177326

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 482   tacatctatatacatatacatattcttcatg 512
             ||||| ||||||||||||||||||| |||||
Sbjct: 10641 tacatatatatacatatacatattcatcatg 10671

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>gb|AC004445.1|AC004445 Drosophila melanogaster DNA sequence (P1 DS00445 (D93)), complete
             sequence
          Length = 61852

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 482   tacatctatatacatatacatattcttcatg 512
             ||||| ||||||||||||||||||| |||||
Sbjct: 49738 tacatatatatacatatacatattcatcatg 49708

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>gb|AC113320.7| Mus musculus chromosome 6, clone RP23-445E16, complete sequence
          Length = 267708

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 488  tatatacatatacatattcttc 509
            ||||||||||||||||||||||
Sbjct: 2392 tatatacatatacatattcttc 2371

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>gb|AC137119.7| Mus musculus chromosome 6, clone RP23-252K4, complete sequence
          Length = 226354

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 488    tatatacatatacatattcttc 509
              ||||||||||||||||||||||
Sbjct: 105462 tatatacatatacatattcttc 105441

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>ref|XM_761198.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
            (TP01_0770) partial mRNA
          Length = 2286

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 215  acaggagaaatcaatcctgattgtgt 240
            ||||| ||||||||||||||||||||
Sbjct: 1194 acaggggaaatcaatcctgattgtgt 1219

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>emb|BX255896.4| Zebrafish DNA sequence from clone CH211-249O11 in linkage group 2,
             complete sequence
          Length = 150289

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 475   ttttctttacatctatatacatatacatat 504
             |||| |||||||||||||||||||| ||||
Sbjct: 93386 ttttatttacatctatatacatatatatat 93357

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>dbj|AP001554.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-35P15, complete
             sequence
          Length = 171747

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 482   tacatctatatacatatacatattct 507
             |||||||||||||| |||||||||||
Sbjct: 91227 tacatctatatacagatacatattct 91252

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>gb|AC190363.3| Atelerix albiventris clone LB4-307O5, complete sequence
          Length = 139049

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 484   catctatatacatatacatat 504
             |||||||||||||||||||||
Sbjct: 46708 catctatatacatatacatat 46688

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>gb|AC188946.3| Gallus gallus BAC clone CH261-68C18 from chromosome z, complete
             sequence
          Length = 175672

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 485   atctatatacatatacatatt 505
             |||||||||||||||||||||
Sbjct: 38616 atctatatacatatacatatt 38596

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>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence
          Length = 22422827

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 484      catctatatacatatacatat 504
                |||||||||||||||||||||
Sbjct: 15970548 catctatatacatatacatat 15970568

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>gb|AC153729.1| Mus musculus  BAC RP23-88C11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 250801

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 482    tacatctatatacatatacatattc 506
              ||||| |||||||||||||||||||
Sbjct: 143360 tacatatatatacatatacatattc 143384

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>gb|AE014842.1| Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete
             sequence
          Length = 253151

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 485   atctatatacatatacatatt 505
             |||||||||||||||||||||
Sbjct: 33433 atctatatacatatacatatt 33413

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>gb|AY020852.1| Oryza sativa microsatellite MRG3177 containing (TA)X15, closest to
           marker G376, genomic sequence
          Length = 230

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 482 tacatctatatacatatacat 502
           |||||||||||||||||||||
Sbjct: 70  tacatctatatacatatacat 50

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>gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, complete sequence
          Length = 220191

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 480   tttacatctatatacatatacatat 504
             ||||||| |||||||||||||||||
Sbjct: 59859 tttacatatatatacatatacatat 59883

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>gb|AC009256.9| Drosophila melanogaster clone BACR03G18, complete sequence
          Length = 179931

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 484   catctatatacatatacatat 504
             |||||||||||||||||||||
Sbjct: 32414 catctatatacatatacatat 32434

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>gb|AY362772.1| Ovis aries T-cell receptor gene, Vgamma6 and Jgamma4.1 regions
          Length = 18015

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 488   tatatacatatacatattctt 508
             |||||||||||||||||||||
Sbjct: 15707 tatatacatatacatattctt 15687

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>gb|AC109501.21| Mus musculus chromosome 17, clone RP23-449E17, complete sequence
          Length = 187144

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 486   tctatatacatatacatattc 506
             |||||||||||||||||||||
Sbjct: 26022 tctatatacatatacatattc 26042

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>gb|AC122184.4| Mus musculus BAC clone RP23-16C12 from chromosome 7, complete sequence
          Length = 222122

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 480    tttacatctatatacatatacatat 504
              |||||||||||||| ||||||||||
Sbjct: 148171 tttacatctatatatatatacatat 148195

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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 501     atattcttcatggtgttgttc 521
               |||||||||||||||||||||
Sbjct: 3481463 atattcttcatggtgttgttc 3481443

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>gb|AC136628.2| Homo sapiens chromosome 5 clone RP11-798K23, complete sequence
          Length = 137132

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 481    ttacatctatatacatatacatatt 505
              |||||| ||||||||||||||||||
Sbjct: 106632 ttacatgtatatacatatacatatt 106656

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>gb|AC026231.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-114F4, complete
             sequence
          Length = 208199

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 480   tttacatctatatacatatacatat 504
             ||||||| |||||||||||||||||
Sbjct: 83421 tttacatatatatacatatacatat 83445

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>emb|CR318633.23| Zebrafish DNA sequence from clone CH211-117B1 in linkage group 10,
              complete sequence
          Length = 158788

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 488    tatatacatatacatattctt 508
              |||||||||||||||||||||
Sbjct: 144096 tatatacatatacatattctt 144116

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 482     tacatctatatacatatacat 502
               |||||||||||||||||||||
Sbjct: 4241393 tacatctatatacatatacat 4241413



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 480      tttacatctatatacatatacatat 504
                ||||||| |||||||||||||||||
Sbjct: 21248054 tttacatatatatacatatacatat 21248030

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>gb|AC019193.7| Homo sapiens BAC clone RP11-335L23 from 4, complete sequence
          Length = 177720

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 484   catctatatacatatacatat 504
             |||||||||||||||||||||
Sbjct: 48862 catctatatacatatacatat 48842

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>emb|AL645730.10| Human DNA sequence from clone RP11-93G23 on chromosome 1 Contains the
            5' end of a the gene for a novel protein and a pseudogene
            similar to part of NADH dehydrogenase 2 (MTND2), complete
            sequence
          Length = 153702

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 480  tttacatctatatacatatacatat 504
            ||||||| |||||||||||||||||
Sbjct: 8475 tttacatatatatacatatacatat 8451

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>emb|AL589678.9| Human DNA sequence from clone RP11-74C3 on chromosome 9 Contains the 3'
             end of a novel gene, complete sequence
          Length = 134922

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 486   tctatatacatatacatattc 506
             |||||||||||||||||||||
Sbjct: 46715 tctatatacatatacatattc 46735

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>gb|AC160393.2| Mus musculus BAC clone RP23-136M3 from chromosome 12, complete sequence
          Length = 215692

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 480   tttacatctatatacatatacatat 504
             ||||||||| |||||||||||||||
Sbjct: 97182 tttacatctctatacatatacatat 97158

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>emb|CR932807.1| Mus musculus chromosome 2, clone ResGen-172B22 strain 129/Sv, complete
             sequence
          Length = 138840

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 483   acatctatatacatatacata 503
             |||||||||||||||||||||
Sbjct: 47536 acatctatatacatatacata 47516

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>emb|CR932805.1| Mus musculus chromosome 2, clone ResGen-283N17 strain 129/Sv, complete
              sequence
          Length = 151864

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 483    acatctatatacatatacata 503
              |||||||||||||||||||||
Sbjct: 146803 acatctatatacatatacata 146783

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>gb|AC010744.7| Homo sapiens BAC clone RP11-548D17 from 2, complete sequence
          Length = 186687

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 480    tttacatctatatacatatacatat 504
              ||||||| |||||||||||||||||
Sbjct: 172241 tttacatatatatacatatacatat 172265

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>dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1590_E05
          Length = 148205

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 482    tacatctatatacatatacat 502
              |||||||||||||||||||||
Sbjct: 141016 tacatctatatacatatacat 141036

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>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBa0054L03
          Length = 183623

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 482  tacatctatatacatatacat 502
            |||||||||||||||||||||
Sbjct: 4187 tacatctatatacatatacat 4207

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>dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0016C11
          Length = 170723

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 480   tttacatctatatacatatacatat 504
             ||||||| |||||||||||||||||
Sbjct: 74331 tttacatatatatacatatacatat 74307

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>emb|BX510644.3| Zebrafish DNA sequence from clone CH211-153L6 in linkage group 2,
            complete sequence
          Length = 141516

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 476  tttctttacatctatatacatatacatat 504
            |||||||||||||||||| ||||| ||||
Sbjct: 9703 tttctttacatctatatatatatatatat 9731

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>gb|AC113425.2| Homo sapiens chromosome 5 clone RP11-626B22, complete sequence
          Length = 180571

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 481    ttacatctatatacatatacatatt 505
              |||||| ||||||||||||||||||
Sbjct: 112752 ttacatgtatatacatatacatatt 112776

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>emb|BX284619.11| Zebrafish DNA sequence from clone DKEY-251E24 in linkage group 1,
             complete sequence
          Length = 196931

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 484   catctatatacatatacatat 504
             |||||||||||||||||||||
Sbjct: 68555 catctatatacatatacatat 68575

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>emb|BX248503.7| Zebrafish DNA sequence from clone CH211-232M7 in linkage group 10,
              complete sequence
          Length = 127345

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 488    tatatacatatacatattctt 508
              |||||||||||||||||||||
Sbjct: 112622 tatatacatatacatattctt 112642

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>gb|AC154823.2| Mus musculus BAC clone RP24-538J1 from 17, complete sequence
          Length = 187746

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 486   tctatatacatatacatattc 506
             |||||||||||||||||||||
Sbjct: 82588 tctatatacatatacatattc 82608

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>dbj|AP001831.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-317J19, complete
             sequence
          Length = 185919

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 480   tttacatctatatacatatacatat 504
             ||||||| |||||||||||||||||
Sbjct: 86109 tttacatatatatacatatacatat 86133

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>dbj|AP003094.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-659O1, complete
             sequences
          Length = 179724

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 480   tttacatctatatacatatacatat 504
             ||||||| |||||||||||||||||
Sbjct: 93395 tttacatatatatacatatacatat 93371

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>ref|NM_001017134.2| Xenopus tropicalis zinc finger protein 259 (znf259), mRNA
 emb|CR761047.2| Xenopus tropicalis finished cDNA, clone TEgg072i20
          Length = 2330

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 373  attagccatttttaagttgca 393
            |||||||||||||||||||||
Sbjct: 2176 attagccatttttaagttgca 2196

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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 474     tttttctttacatctatatac 494
               |||||||||||||||||||||
Sbjct: 1790917 tttttctttacatctatatac 1790897

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>ref|XM_667248.1| Plasmodium berghei strain ANKA hypothetical protein (PB101166.00.0)
           partial mRNA
          Length = 267

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 481 ttacatctatatacatatacatatt 505
           |||||| ||||||||||||||||||
Sbjct: 74  ttacatatatatacatatacatatt 98

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>emb|BX005212.7| Zebrafish DNA sequence from clone DKEY-221H2 in linkage group 1,
             complete sequence
          Length = 272535

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 484   catctatatacatatacatat 504
             |||||||||||||||||||||
Sbjct: 85712 catctatatacatatacatat 85732

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>gb|AF016591.1|AF016591 Homo sapiens survival motor neuron pseudogene, complete sequence
          Length = 2638

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 484  catctatatacatatacatat 504
            |||||||||||||||||||||
Sbjct: 1764 catctatatacatatacatat 1784

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>emb|AL928877.6| Mouse DNA sequence from clone RP23-52D18 on chromosome 2, complete
             sequence
          Length = 201120

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 483   acatctatatacatatacata 503
             |||||||||||||||||||||
Sbjct: 21711 acatctatatacatatacata 21691

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>gb|AC170603.2| Mus musculus BAC clone RP23-140J10 from chromosome 8, complete
           sequence
          Length = 221596

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 480 tttacatctatatacatatacatat 504
           ||||||| |||||||||||||||||
Sbjct: 905 tttacatatatatacatatacatat 929

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>gb|AC092956.5| Homo sapiens 3 BAC RP11-648O5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 194510

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 482   tacatctatatacatatacatattc 506
             ||||| |||||||||||||||||||
Sbjct: 40326 tacatatatatacatatacatattc 40302


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 132,450,132
Number of extensions: 7668626
Number of successful extensions: 272893
Number of sequences better than 10.0: 63
Number of HSP's gapped: 272893
Number of HSP's successfully gapped: 71
Length of query: 690
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 668
Effective length of database: 18,508,616,841
Effective search space: 12363756049788
Effective search space used: 12363756049788
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result