Clone Name | FLbaf98p03 |
---|---|
Clone Library Name | barley_pub |
>LOC_Os10g29560:12010.t02297:unspliced-genomic expressed protein| Length = 8503 Score = 37.3 bits (75), Expect = 0.027 Identities = 15/52 (28%), Positives = 29/52 (55%) Frame = -3 / -2 Query: 178 LHCVVPNCPSMLFKNASRDRRKETRLRKTKQITGIIWTPHHSSHPSSCATAT 23 +H + + +K + ++K+ R+ K++T T H S+HPSS A++T Sbjct: 2613 IHVAKVSATTATYKPVRKKKKKKKSNRQGKKVTKTTTTHHSSTHPSSIASST 2458
>LOC_Os08g32060:12008.t02951:unspliced-genomic spotted leaf protein 11, putative, expressed| Length = 2433 Score = 29.0 bits (57), Expect(2) = 0.22 Identities = 10/13 (76%), Positives = 13/13 (100%) Frame = -3 / -2 Query: 154 PSMLFKNASRDRR 116 PS+LFKN+SRDR+ Sbjct: 2297 PSLLFKNSSRDRK 2259 Score = 22.6 bits (43), Expect(2) = 0.22 Identities = 8/8 (100%), Positives = 8/8 (100%) Frame = -2 / -1 Query: 26 YTRMTRSP 3 YTRMTRSP Sbjct: 2154 YTRMTRSP 2131
>LOC_Os04g45000:12004.t04035:unspliced-genomic short-chain dehydrogenase/reductase SDR, putative, expressed| Length = 1658 Score = 31.8 bits (63), Expect = 1.2 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 / -1 Query: 162 PIAHPCSSKTRAGTDERKLASEKQNK 85 PI HPC+S + A RKLAS ++ Sbjct: 1244 PIGHPCASSSPASKSFRKLASTSSSR 1167
>LOC_Os11g04190:12011.t00310:unspliced-genomic auxin efflux carrier component 1b, putative, expressed| Length = 3300 Score = 31.3 bits (62), Expect = 1.7 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -3 / +2 Query: 211 LFYINTLLCTILHCVVPNCPSML 143 LF+ N LC+ LHC P P +L Sbjct: 86 LFFFNPSLCSFLHCSSPPSPILL 154
>LOC_Os03g38930:12003.t03336:unspliced-genomic expressed protein| Length = 5729 Score = 31.3 bits (62), Expect = 1.7 Identities = 14/35 (40%), Positives = 15/35 (42%) Frame = +2 / +2 Query: 23 CSCSTRTWV**VMRCPDDSCNLFCFSEASFLSSVP 127 CSC+TRTW RCP L S S P Sbjct: 584 CSCATRTWCGSRTRCPTSPATLTRISSRPATRSFP 688
>LOC_Os09g38700:12009.t03338:unspliced-genomic leucine-rich repeat transmembrane protein kinase 1, putative,| expressed Length = 5410 Score = 31.3 bits (62), Expect = 1.7 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = -1 / -2 Query: 174 IVWSPIAHPCSSKTRAGTDERKLASEKQNKLQES 73 +V S + HPCS++ R ++ A ++++LQE+ Sbjct: 2286 MVGSDLTHPCSNEMRRERNDSSSAQTRESELQEA 2185
>LOC_Os07g31370:12007.t02825:unspliced-genomic ras-related protein Rab-6A, putative, expressed| Length = 4013 Score = 31.3 bits (62), Expect = 1.7 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = -1 / +2 Query: 165 SPIAHPCSSKTRAGTDERKLASEKQNKLQESSGHLITHHTQV 40 +PI+ P ++ T +E++ AS + S+GH THH + Sbjct: 26 APISEPNNAHTTRREEEKRSASLGLPSFRPSAGHKRTHHPPI 151
>LOC_Os08g31680:12008.t02913:unspliced-genomic retrotransposon protein, putative, LINE subclass| Length = 5606 Score = 30.9 bits (61), Expect = 2.4 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -1 / -3 Query: 216 VLSFT*TLSYVQFYIVWSPIAHPCSSKTRA 127 VL * L + F+IVW HPC + +RA Sbjct: 2502 VLCLL*FLQKISFFIVWLWSIHPCYAPSRA 2413
>LOC_Os03g02550:12003.t00145:unspliced-genomic ATPP2-A13, putative, expressed| Length = 2373 Score = 24.9 bits (48), Expect(2) = 2.9 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -3 / +2 Query: 139 KNASRDRRKETRLRKTKQITGIIWT 65 ++A+ RR R ++ITGI WT Sbjct: 629 RSAAPRRRTSCGKRSCRRITGISWT 703 Score = 24.4 bits (47), Expect(2) = 2.9 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = -1 / +3 Query: 186 VQFYIVWSPIAHPCS 142 ++F+ W PIA PC+ Sbjct: 351 IEFFGSWFPIAAPCA 395
>LOC_Os12g04940:12012.t00382:unspliced-genomic expressed protein| Length = 6607 Score = 30.4 bits (60), Expect = 3.2 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -3 / -1 Query: 91 KQITGIIWTPHHSSHPSSC 35 K + G +W PHHS H +C Sbjct: 4741 KNLFGQVWLPHHSHHLLNC 4685
>LOC_Os07g46060:12007.t04243:unspliced-genomic expressed protein| Length = 4578 Score = 30.4 bits (60), Expect = 3.2 Identities = 12/47 (25%), Positives = 21/47 (44%) Frame = -2 / +1 Query: 173 LCGPQLPIHALQKREQGQTKGNSPPKNKTNYRNHLDTSSLITPKFVC 33 +C Q+ + +R + + PP+ + RNHL S P + C Sbjct: 913 VCSGQIHLPRCPRRRHPRRPASWPPRWRRRQRNHLHRRSAAKPSWPC 1053
>LOC_Os08g39830:12008.t03714:unspliced-genomic ethylene-insensitive3-like protein, putative, expressed| Length = 3305 Score = 30.4 bits (60), Expect = 3.2 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -1 / -3 Query: 219 LVLSFT*TLSYVQFYIVWSPI 157 L LSFT T Y+Q Y+ W P+ Sbjct: 2796 LFLSFTSTYIYIQHYVPWFPL 2734
>LOC_Os11g45580:12011.t04085:unspliced-genomic cadmium tolerance factor, putative, expressed| Length = 5546 Score = 29.9 bits (59), Expect = 4.3 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -3 / -1 Query: 133 ASRDRRKETRLRKTKQITGIIWTPHHSSHPSS 38 ASRD KE L K K + I W P + P++ Sbjct: 794 ASRDAMKEMALEKKKNLYRIGWRPGSTGSPAA 699
>LOC_Os05g37170:12005.t03260:unspliced-genomic transcription factor TGA6, putative, expressed| Length = 8850 Score = 29.9 bits (59), Expect = 4.3 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 / -2 Query: 128 QGQTKGNSPPKNKTNYRNHLDTSSLITPKFVCYSYTR 18 QGQT+ NS K ++ S L+ P F+C +T+ Sbjct: 6218 QGQTRHNSDTKYNHTLASNSFPSFLVDPCFLCTKHTK 6108
>LOC_Os07g03090:12007.t00199:unspliced-genomic F-box domain containing protein| Length = 1414 Score = 29.9 bits (59), Expect = 4.4 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -1 / +2 Query: 153 HPCSSKTRAGTDERKLASEKQNKLQESSGH 64 HP +AG D +LA +++ +L ESS H Sbjct: 701 HPALRPAQAGPDGDRLAGDRRRRL*ESSPH 790
>LOC_Os02g39950:12002.t03631:unspliced-genomic calcium binding atopy-related autoantigen 1, putative, expressed| Length = 4593 Score = 29.9 bits (59), Expect = 4.4 Identities = 17/51 (33%), Positives = 22/51 (43%) Frame = -1 / +2 Query: 159 IAHPCSSKTRAGTDERKLASEKQNKLQESSGHLITHHTQVRVLQLHSNDAV 7 IA CSS TR G L + S + T H + +L L SN+ V Sbjct: 563 IAEGCSSTTRRGFGRAALLKR*RPMCHIQSNFVYTQHDMIILLGLCSNNCV 715
>LOC_Os06g50910:12006.t04775:unspliced-genomic serine/threonine-protein kinase ATR, putative, expressed| Length = 18672 Score = 23.5 bits (45), Expect(2) = 4.8 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = -1 / -3 Query: 195 LSYVQFYIVWSPIAHPCSSKTRAG 124 LSY+ + W PI+H + AG Sbjct: 13852 LSYLLALLGWGPISHHLQMPSLAG 13781 Score = 23.1 bits (44), Expect(2) = 4.8 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = -2 / -1 Query: 65 TSSLITPKFVCYSY 24 +SSL+TP F C Y Sbjct: 13698 SSSLVTPNF*CMPY 13657
>LOC_Os09g30466:12009.t02731:unspliced-genomic nuclear ribonuclease Z, putative, expressed| Length = 3161 Score = 29.5 bits (58), Expect = 6.0 Identities = 8/16 (50%), Positives = 12/16 (75%) Frame = -3 / +3 Query: 211 LFYINTLLCTILHCVV 164 LFYI + CT+ HC++ Sbjct: 1611 LFYIRNIFCTVTHCLL 1658
>LOC_Os06g29020:12006.t02606:unspliced-genomic retrotransposon protein, putative, unclassified, expressed| Length = 5288 Score = 29.5 bits (58), Expect = 6.0 Identities = 9/13 (69%), Positives = 9/13 (69%) Frame = -3 / -1 Query: 70 WTPHHSSHPSSCA 32 W PH SHPS CA Sbjct: 4592 WLPHQCSHPSFCA 4554
>LOC_Os05g45920:12005.t04080:unspliced-genomic RNA binding protein, putative, expressed| Length = 4150 Score = 29.5 bits (58), Expect = 6.0 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -2 / -1 Query: 203 HKHSLMYNFTLCGPQLPIHALQKREQ 126 H H L ++ C P+LP H+L++R + Sbjct: 436 HPHQLRHSPPPCPPRLPPHSLRRRRR 359
>LOC_Os04g59624:12004.t005538:unspliced-genomic helicase conserved C-terminal domain containing protein, expressed| Length = 6150 Score = 29.5 bits (58), Expect = 6.0 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +2 / -2 Query: 65 CPDDSCNLFCFSEAS 109 CP SCN FC SE S Sbjct: 4631 CPCSSCNCFCVSETS 4587
>LOC_Os04g13364:12004.t01157:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class, expressed| Length = 12290 Score = 29.5 bits (58), Expect = 6.0 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -3 / +3 Query: 79 GIIWTPHHSSHPSSCATATL 20 G IW HH++H + C AT+ Sbjct: 7938 GWIWRSHHNAHEA*CTVATI 7997
>LOC_Os03g59480:12003.t05195:unspliced-genomic expressed protein| Length = 4757 Score = 29.5 bits (58), Expect = 6.0 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -2 / +1 Query: 206 LHKHSLMYNFTLCGPQLPIHALQKREQGQT 117 +H H+L ++F G P + L+KRE QT Sbjct: 3943 VHPHALRHSFRWAGESRPGYILRKREFKQT 4032
>LOC_Os02g33710:12002.t03012:unspliced-genomic histidine decarboxylase, putative, expressed| Length = 3115 Score = 29.5 bits (58), Expect = 6.0 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -3 / -2 Query: 76 IIWTPHHSSHPSSCATATL 20 +IWTPH HP++ TL Sbjct: 2640 VIWTPHGMGHPTNLCPETL 2584
>LOC_Os01g25600:12001.t02276:unspliced-genomic TPR Domain containing protein, expressed| Length = 6492 Score = 29.5 bits (58), Expect = 6.0 Identities = 9/15 (60%), Positives = 13/15 (86%) Frame = +2 / +2 Query: 62 RCPDDSCNLFCFSEA 106 RC +SC+L+CFSE+ Sbjct: 4247 RCSSNSCDLWCFSES 4291
>LOC_Os01g56764:12001.t05086:unspliced-genomic expressed protein| Length = 10263 Score = 29.5 bits (58), Expect = 6.1 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = -1 / +3 Query: 174 IVWSPIAHPCSSKTRAGTDERKLASEKQNKLQESSGHLIT 55 + W+P PCSS++ G R L S + ++++ L T Sbjct: 8466 VAWAPARAPCSSRS*RGQSVRPLRSRTRAGTRDAAIELTT 8585
>LOC_Os12g43130:12012.t03985:unspliced-genomic phytoene synthase, chloroplast precursor, putative, expressed| Length = 3112 Score = 29.0 bits (57), Expect = 8.2 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -3 / -2 Query: 112 ETRLRKTKQITGIIWTPHHSSH 47 E++++K K++TG I H SSH Sbjct: 1266 ESKIKKNKKVTGFINQAHASSH 1201
>LOC_Os10g30054:12010.t02340:unspliced-genomic ENT domain containing protein, expressed| Length = 9476 Score = 29.0 bits (57), Expect = 8.2 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +2 / +2 Query: 23 CSCSTRTWV**VMRCPDDSCNLFCFSEASFLSSVPA 130 C C+TR+W * + P ++ + C +E+ S+ P+ Sbjct: 4505 CKCNTRSWR*GISDSPLEAICICCCAESVLCSTRPS 4612
>LOC_Os07g06820:12007.t00561:unspliced-genomic serine/threonine-protein kinase RIO1, putative, expressed| Length = 6192 Score = 29.0 bits (57), Expect = 8.2 Identities = 9/25 (36%), Positives = 16/25 (64%) Frame = -3 / +3 Query: 199 NTLLCTILHCVVPNCPSMLFKNASR 125 N +C+ILHC +P ++L+ +R Sbjct: 3993 NRSICSILHCFLPRIENLLYPCTTR 4067
>LOC_Os05g06310:12005.t00521:unspliced-genomic 60S ribosomal protein L18, putative, expressed| Length = 2622 Score = 29.0 bits (57), Expect = 8.2 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = -2 / -1 Query: 197 HSLMYNFTLCGPQLPIHALQKREQGQTKGNSPPKNKTNYRNHLDTSS 57 H L ++FT+ P+ +L REQ + K +S + +T L T++ Sbjct: 2553 HELNHHFTMTASHEPMTSLSPREQWRRKFSSSNREETKNIVFLPTNA 2413
>LOC_Os04g51610:12004.t04638:unspliced-genomic calcium-transporting ATPase 9, plasma membrane-type, putative,| expressed Length = 12197 Score = 29.0 bits (57), Expect = 8.2 Identities = 14/50 (28%), Positives = 24/50 (48%) Frame = -2 / -3 Query: 164 PQLPIHALQKREQGQTKGNSPPKNKTNYRNHLDTSSLITPKFVCYSYTRM 15 PQ+P + K K +S + +N D + I P+ CY+YT++ Sbjct: 11331 PQMPTASCIKEINQVVKYSSTLYENKSEKNS*DNTIFILPEGRCYNYTKI 11182
>LOC_Os01g37580:12001.t03300:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 12132 Score = 29.0 bits (57), Expect = 8.2 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -3 / -2 Query: 214 TLFYINTLLCTILHCVVPNCPSMLF 140 T+F I ++LC L C+ +C +LF Sbjct: 9605 TIFIITSILCRTLGCIFISCVLILF 9531
>LOC_Os01g02560:12001.t00151:unspliced-genomic Ser/Thr receptor-like kinase, putative, expressed| Length = 3924 Score = 29.0 bits (57), Expect = 8.2 Identities = 9/22 (40%), Positives = 14/22 (63%) Frame = -3 / +1 Query: 103 LRKTKQITGIIWTPHHSSHPSS 38 +R+T+ ++WT HH PSS Sbjct: 190 MRRTRHALVMLWTGHHPQSPSS 255
>LOC_Os04g13210:12004.t01142:unspliced-genomic multidrug resistance-associated protein 4, putative, expressed| Length = 10723 Score = 29.0 bits (57), Expect = 8.4 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -1 / -3 Query: 99 EKQNKLQESSGHLITHHTQVRVLQLH 22 E+Q +L+ S HL+THH + H Sbjct: 6593 EQQQELRNLSQHLVTHHISLTAQSCH 6516 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 102,114,738 Number of extensions: 1425085 Number of successful extensions: 6580 Number of sequences better than 10.0: 34 Length of query: 88 Length of database: 55,613,886 Length adjustment: 45 Effective length of query: 43 Effective length of database: 53,081,376 Effective search space: 2282499168 Effective search space used: 2282499168 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)