ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf98p03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os10g29560:12010.t02297:unspliced-genomic expressed protein 37 0.027
2LOC_Os08g32060:12008.t02951:unspliced-genomic spotted leaf p... 29 0.22
3LOC_Os04g45000:12004.t04035:unspliced-genomic short-chain de... 32 1.2
4LOC_Os11g04190:12011.t00310:unspliced-genomic auxin efflux c... 31 1.7
5LOC_Os03g38930:12003.t03336:unspliced-genomic expressed protein 31 1.7
6LOC_Os09g38700:12009.t03338:unspliced-genomic leucine-rich r... 31 1.7
7LOC_Os07g31370:12007.t02825:unspliced-genomic ras-related pr... 31 1.7
8LOC_Os08g31680:12008.t02913:unspliced-genomic retrotransposo... 31 2.4
9LOC_Os03g02550:12003.t00145:unspliced-genomic ATPP2-A13, put... 25 2.9
10LOC_Os12g04940:12012.t00382:unspliced-genomic expressed protein 30 3.2
11LOC_Os07g46060:12007.t04243:unspliced-genomic expressed protein 30 3.2
12LOC_Os08g39830:12008.t03714:unspliced-genomic ethylene-insen... 30 3.2
13LOC_Os11g45580:12011.t04085:unspliced-genomic cadmium tolera... 30 4.3
14LOC_Os05g37170:12005.t03260:unspliced-genomic transcription ... 30 4.3
15LOC_Os07g03090:12007.t00199:unspliced-genomic F-box domain c... 30 4.4
16LOC_Os02g39950:12002.t03631:unspliced-genomic calcium bindin... 30 4.4
17LOC_Os06g50910:12006.t04775:unspliced-genomic serine/threoni... 24 4.8
18LOC_Os09g30466:12009.t02731:unspliced-genomic nuclear ribonu... 29 6.0
19LOC_Os06g29020:12006.t02606:unspliced-genomic retrotransposo... 29 6.0
20LOC_Os05g45920:12005.t04080:unspliced-genomic RNA binding pr... 29 6.0
21LOC_Os04g59624:12004.t005538:unspliced-genomic helicase cons... 29 6.0
22LOC_Os04g13364:12004.t01157:unspliced-genomic transposon pro... 29 6.0
23LOC_Os03g59480:12003.t05195:unspliced-genomic expressed protein 29 6.0
24LOC_Os02g33710:12002.t03012:unspliced-genomic histidine deca... 29 6.0
25LOC_Os01g25600:12001.t02276:unspliced-genomic TPR Domain con... 29 6.0
26LOC_Os01g56764:12001.t05086:unspliced-genomic expressed protein 29 6.1
27LOC_Os12g43130:12012.t03985:unspliced-genomic phytoene synth... 29 8.2
28LOC_Os10g30054:12010.t02340:unspliced-genomic ENT domain con... 29 8.2
29LOC_Os07g06820:12007.t00561:unspliced-genomic serine/threoni... 29 8.2
30LOC_Os05g06310:12005.t00521:unspliced-genomic 60S ribosomal ... 29 8.2
31LOC_Os04g51610:12004.t04638:unspliced-genomic calcium-transp... 29 8.2
32LOC_Os01g37580:12001.t03300:unspliced-genomic retrotransposo... 29 8.2
33LOC_Os01g02560:12001.t00151:unspliced-genomic Ser/Thr recept... 29 8.2
34LOC_Os04g13210:12004.t01142:unspliced-genomic multidrug resi... 29 8.4

>LOC_Os10g29560:12010.t02297:unspliced-genomic expressed protein|
          Length = 8503
 Score = 37.3 bits (75), Expect = 0.027
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -3 / -2

                                                                
Query: 178  LHCVVPNCPSMLFKNASRDRRKETRLRKTKQITGIIWTPHHSSHPSSCATAT 23
            +H    +  +  +K   + ++K+   R+ K++T    T H S+HPSS A++T
Sbjct: 2613 IHVAKVSATTATYKPVRKKKKKKKSNRQGKKVTKTTTTHHSSTHPSSIASST 2458



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>LOC_Os08g32060:12008.t02951:unspliced-genomic spotted leaf protein 11, putative, expressed|
          Length = 2433

 Score = 29.0 bits (57), Expect(2) = 0.22
 Identities = 10/13 (76%), Positives = 13/13 (100%)
 Frame = -3 / -2

                         
Query: 154  PSMLFKNASRDRR 116
            PS+LFKN+SRDR+
Sbjct: 2297 PSLLFKNSSRDRK 2259



 Score = 22.6 bits (43), Expect(2) = 0.22
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2 / -1

                    
Query: 26   YTRMTRSP 3
            YTRMTRSP
Sbjct: 2154 YTRMTRSP 2131



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>LOC_Os04g45000:12004.t04035:unspliced-genomic short-chain dehydrogenase/reductase SDR, putative, expressed|
          Length = 1658

 Score = 31.8 bits (63), Expect = 1.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1 / -1

                                      
Query: 162  PIAHPCSSKTRAGTDERKLASEKQNK 85
            PI HPC+S + A    RKLAS   ++
Sbjct: 1244 PIGHPCASSSPASKSFRKLASTSSSR 1167



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>LOC_Os11g04190:12011.t00310:unspliced-genomic auxin efflux carrier component 1b, putative, expressed|
          Length = 3300

 Score = 31.3 bits (62), Expect = 1.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3 / +2

                                  
Query: 211 LFYINTLLCTILHCVVPNCPSML 143
           LF+ N  LC+ LHC  P  P +L
Sbjct: 86  LFFFNPSLCSFLHCSSPPSPILL 154



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>LOC_Os03g38930:12003.t03336:unspliced-genomic expressed protein|
          Length = 5729

 Score = 31.3 bits (62), Expect = 1.7
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +2 / +2

                                              
Query: 23  CSCSTRTWV**VMRCPDDSCNLFCFSEASFLSSVP 127
           CSC+TRTW     RCP     L   S      S P
Sbjct: 584 CSCATRTWCGSRTRCPTSPATLTRISSRPATRSFP 688



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>LOC_Os09g38700:12009.t03338:unspliced-genomic leucine-rich repeat transmembrane protein kinase 1, putative,|
            expressed
          Length = 5410

 Score = 31.3 bits (62), Expect = 1.7
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -1 / -2

                                              
Query: 174  IVWSPIAHPCSSKTRAGTDERKLASEKQNKLQES 73
            +V S + HPCS++ R   ++   A  ++++LQE+
Sbjct: 2286 MVGSDLTHPCSNEMRRERNDSSSAQTRESELQEA 2185



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>LOC_Os07g31370:12007.t02825:unspliced-genomic ras-related protein Rab-6A, putative, expressed|
          Length = 4013

 Score = 31.3 bits (62), Expect = 1.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1 / +2

                                                     
Query: 165 SPIAHPCSSKTRAGTDERKLASEKQNKLQESSGHLITHHTQV 40
           +PI+ P ++ T    +E++ AS      + S+GH  THH  +
Sbjct: 26  APISEPNNAHTTRREEEKRSASLGLPSFRPSAGHKRTHHPPI 151



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>LOC_Os08g31680:12008.t02913:unspliced-genomic retrotransposon protein, putative, LINE subclass|
          Length = 5606

 Score = 30.9 bits (61), Expect = 2.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1 / -3

                                          
Query: 216  VLSFT*TLSYVQFYIVWSPIAHPCSSKTRA 127
            VL   * L  + F+IVW    HPC + +RA
Sbjct: 2502 VLCLL*FLQKISFFIVWLWSIHPCYAPSRA 2413



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>LOC_Os03g02550:12003.t00145:unspliced-genomic ATPP2-A13, putative, expressed|
          Length = 2373

 Score = 24.9 bits (48), Expect(2) = 2.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3 / +2

                                    
Query: 139 KNASRDRRKETRLRKTKQITGIIWT 65
           ++A+  RR     R  ++ITGI WT
Sbjct: 629 RSAAPRRRTSCGKRSCRRITGISWT 703



 Score = 24.4 bits (47), Expect(2) = 2.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1 / +3

                          
Query: 186 VQFYIVWSPIAHPCS 142
           ++F+  W PIA PC+
Sbjct: 351 IEFFGSWFPIAAPCA 395



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>LOC_Os12g04940:12012.t00382:unspliced-genomic expressed protein|
          Length = 6607

 Score = 30.4 bits (60), Expect = 3.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3 / -1

                               
Query: 91   KQITGIIWTPHHSSHPSSC 35
            K + G +W PHHS H  +C
Sbjct: 4741 KNLFGQVWLPHHSHHLLNC 4685



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>LOC_Os07g46060:12007.t04243:unspliced-genomic expressed protein|
          Length = 4578

 Score = 30.4 bits (60), Expect = 3.2
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -2 / +1

                                                           
Query: 173  LCGPQLPIHALQKREQGQTKGNSPPKNKTNYRNHLDTSSLITPKFVC 33
            +C  Q+ +    +R   +   + PP+ +   RNHL   S   P + C
Sbjct: 913  VCSGQIHLPRCPRRRHPRRPASWPPRWRRRQRNHLHRRSAAKPSWPC 1053



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>LOC_Os08g39830:12008.t03714:unspliced-genomic ethylene-insensitive3-like protein, putative, expressed|
          Length = 3305

 Score = 30.4 bits (60), Expect = 3.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1 / -3

                                 
Query: 219  LVLSFT*TLSYVQFYIVWSPI 157
            L LSFT T  Y+Q Y+ W P+
Sbjct: 2796 LFLSFTSTYIYIQHYVPWFPL 2734



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>LOC_Os11g45580:12011.t04085:unspliced-genomic cadmium tolerance factor, putative, expressed|
          Length = 5546

 Score = 29.9 bits (59), Expect = 4.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3 / -1

                                           
Query: 133 ASRDRRKETRLRKTKQITGIIWTPHHSSHPSS 38
           ASRD  KE  L K K +  I W P  +  P++
Sbjct: 794 ASRDAMKEMALEKKKNLYRIGWRPGSTGSPAA 699



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>LOC_Os05g37170:12005.t03260:unspliced-genomic transcription factor TGA6, putative, expressed|
          Length = 8850

 Score = 29.9 bits (59), Expect = 4.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2 / -2

                                                 
Query: 128  QGQTKGNSPPKNKTNYRNHLDTSSLITPKFVCYSYTR 18
            QGQT+ NS  K      ++   S L+ P F+C  +T+
Sbjct: 6218 QGQTRHNSDTKYNHTLASNSFPSFLVDPCFLCTKHTK 6108



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>LOC_Os07g03090:12007.t00199:unspliced-genomic F-box domain containing protein|
          Length = 1414

 Score = 29.9 bits (59), Expect = 4.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1 / +2

                                         
Query: 153 HPCSSKTRAGTDERKLASEKQNKLQESSGH 64
           HP     +AG D  +LA +++ +L ESS H
Sbjct: 701 HPALRPAQAGPDGDRLAGDRRRRL*ESSPH 790



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>LOC_Os02g39950:12002.t03631:unspliced-genomic calcium binding atopy-related autoantigen 1, putative, expressed|
          Length = 4593

 Score = 29.9 bits (59), Expect = 4.4
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -1 / +2

                                                              
Query: 159 IAHPCSSKTRAGTDERKLASEKQNKLQESSGHLITHHTQVRVLQLHSNDAV 7
           IA  CSS TR G     L    +      S  + T H  + +L L SN+ V
Sbjct: 563 IAEGCSSTTRRGFGRAALLKR*RPMCHIQSNFVYTQHDMIILLGLCSNNCV 715



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>LOC_Os06g50910:12006.t04775:unspliced-genomic serine/threonine-protein kinase ATR, putative, expressed|
          Length = 18672

 Score = 23.5 bits (45), Expect(2) = 4.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1 / -3

                                     
Query: 195   LSYVQFYIVWSPIAHPCSSKTRAG 124
             LSY+   + W PI+H     + AG
Sbjct: 13852 LSYLLALLGWGPISHHLQMPSLAG 13781



 Score = 23.1 bits (44), Expect(2) = 4.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2 / -1

                           
Query: 65    TSSLITPKFVCYSY 24
             +SSL+TP F C  Y
Sbjct: 13698 SSSLVTPNF*CMPY 13657



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>LOC_Os09g30466:12009.t02731:unspliced-genomic nuclear ribonuclease Z, putative, expressed|
          Length = 3161

 Score = 29.5 bits (58), Expect = 6.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3 / +3

                            
Query: 211  LFYINTLLCTILHCVV 164
            LFYI  + CT+ HC++
Sbjct: 1611 LFYIRNIFCTVTHCLL 1658



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>LOC_Os06g29020:12006.t02606:unspliced-genomic retrotransposon protein, putative, unclassified, expressed|
          Length = 5288

 Score = 29.5 bits (58), Expect = 6.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3 / -1

                         
Query: 70   WTPHHSSHPSSCA 32
            W PH  SHPS CA
Sbjct: 4592 WLPHQCSHPSFCA 4554



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>LOC_Os05g45920:12005.t04080:unspliced-genomic RNA binding protein, putative, expressed|
          Length = 4150

 Score = 29.5 bits (58), Expect = 6.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2 / -1

                                     
Query: 203 HKHSLMYNFTLCGPQLPIHALQKREQ 126
           H H L ++   C P+LP H+L++R +
Sbjct: 436 HPHQLRHSPPPCPPRLPPHSLRRRRR 359



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>LOC_Os04g59624:12004.t005538:unspliced-genomic helicase conserved C-terminal domain containing protein, expressed|
          Length = 6150

 Score = 29.5 bits (58), Expect = 6.0
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2 / -2

                           
Query: 65   CPDDSCNLFCFSEAS 109
            CP  SCN FC SE S
Sbjct: 4631 CPCSSCNCFCVSETS 4587



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>LOC_Os04g13364:12004.t01157:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class, expressed|
          Length = 12290

 Score = 29.5 bits (58), Expect = 6.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3 / +3

                                
Query: 79   GIIWTPHHSSHPSSCATATL 20
            G IW  HH++H + C  AT+
Sbjct: 7938 GWIWRSHHNAHEA*CTVATI 7997



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>LOC_Os03g59480:12003.t05195:unspliced-genomic expressed protein|
          Length = 4757

 Score = 29.5 bits (58), Expect = 6.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2 / +1

                                          
Query: 206  LHKHSLMYNFTLCGPQLPIHALQKREQGQT 117
            +H H+L ++F   G   P + L+KRE  QT
Sbjct: 3943 VHPHALRHSFRWAGESRPGYILRKREFKQT 4032



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>LOC_Os02g33710:12002.t03012:unspliced-genomic histidine decarboxylase, putative, expressed|
          Length = 3115

 Score = 29.5 bits (58), Expect = 6.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3 / -2

                               
Query: 76   IIWTPHHSSHPSSCATATL 20
            +IWTPH   HP++    TL
Sbjct: 2640 VIWTPHGMGHPTNLCPETL 2584



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>LOC_Os01g25600:12001.t02276:unspliced-genomic TPR Domain containing protein, expressed|
          Length = 6492

 Score = 29.5 bits (58), Expect = 6.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2 / +2

                           
Query: 62   RCPDDSCNLFCFSEA 106
            RC  +SC+L+CFSE+
Sbjct: 4247 RCSSNSCDLWCFSES 4291



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>LOC_Os01g56764:12001.t05086:unspliced-genomic expressed protein|
          Length = 10263

 Score = 29.5 bits (58), Expect = 6.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1 / +3

                                                    
Query: 174  IVWSPIAHPCSSKTRAGTDERKLASEKQNKLQESSGHLIT 55
            + W+P   PCSS++  G   R L S  +   ++++  L T
Sbjct: 8466 VAWAPARAPCSSRS*RGQSVRPLRSRTRAGTRDAAIELTT 8585



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>LOC_Os12g43130:12012.t03985:unspliced-genomic phytoene synthase, chloroplast precursor, putative, expressed|
          Length = 3112

 Score = 29.0 bits (57), Expect = 8.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3 / -2

                                  
Query: 112  ETRLRKTKQITGIIWTPHHSSH 47
            E++++K K++TG I   H SSH
Sbjct: 1266 ESKIKKNKKVTGFINQAHASSH 1201



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>LOC_Os10g30054:12010.t02340:unspliced-genomic ENT domain containing protein, expressed|
          Length = 9476

 Score = 29.0 bits (57), Expect = 8.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2 / +2

                                                
Query: 23   CSCSTRTWV**VMRCPDDSCNLFCFSEASFLSSVPA 130
            C C+TR+W * +   P ++  + C +E+   S+ P+
Sbjct: 4505 CKCNTRSWR*GISDSPLEAICICCCAESVLCSTRPS 4612



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>LOC_Os07g06820:12007.t00561:unspliced-genomic serine/threonine-protein kinase RIO1, putative, expressed|
          Length = 6192

 Score = 29.0 bits (57), Expect = 8.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3 / +3

                                     
Query: 199  NTLLCTILHCVVPNCPSMLFKNASR 125
            N  +C+ILHC +P   ++L+   +R
Sbjct: 3993 NRSICSILHCFLPRIENLLYPCTTR 4067



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>LOC_Os05g06310:12005.t00521:unspliced-genomic 60S ribosomal protein L18, putative, expressed|
          Length = 2622

 Score = 29.0 bits (57), Expect = 8.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2 / -1

                                                           
Query: 197  HSLMYNFTLCGPQLPIHALQKREQGQTKGNSPPKNKTNYRNHLDTSS 57
            H L ++FT+     P+ +L  REQ + K +S  + +T     L T++
Sbjct: 2553 HELNHHFTMTASHEPMTSLSPREQWRRKFSSSNREETKNIVFLPTNA 2413



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>LOC_Os04g51610:12004.t04638:unspliced-genomic calcium-transporting ATPase 9, plasma membrane-type, putative,|
             expressed
          Length = 12197

 Score = 29.0 bits (57), Expect = 8.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2 / -3

                                                               
Query: 164   PQLPIHALQKREQGQTKGNSPPKNKTNYRNHLDTSSLITPKFVCYSYTRM 15
             PQ+P  +  K      K +S      + +N  D +  I P+  CY+YT++
Sbjct: 11331 PQMPTASCIKEINQVVKYSSTLYENKSEKNS*DNTIFILPEGRCYNYTKI 11182



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>LOC_Os01g37580:12001.t03300:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 12132

 Score = 29.0 bits (57), Expect = 8.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3 / -2

                                     
Query: 214  TLFYINTLLCTILHCVVPNCPSMLF 140
            T+F I ++LC  L C+  +C  +LF
Sbjct: 9605 TIFIITSILCRTLGCIFISCVLILF 9531



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>LOC_Os01g02560:12001.t00151:unspliced-genomic Ser/Thr receptor-like kinase, putative, expressed|
          Length = 3924

 Score = 29.0 bits (57), Expect = 8.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3 / +1

                                 
Query: 103 LRKTKQITGIIWTPHHSSHPSS 38
           +R+T+    ++WT HH   PSS
Sbjct: 190 MRRTRHALVMLWTGHHPQSPSS 255



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>LOC_Os04g13210:12004.t01142:unspliced-genomic multidrug resistance-associated protein 4, putative, expressed|
          Length = 10723

 Score = 29.0 bits (57), Expect = 8.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1 / -3

                                      
Query: 99   EKQNKLQESSGHLITHHTQVRVLQLH 22
            E+Q +L+  S HL+THH  +     H
Sbjct: 6593 EQQQELRNLSQHLVTHHISLTAQSCH 6516


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 102,114,738
Number of extensions: 1425085
Number of successful extensions: 6580
Number of sequences better than 10.0: 34
Length of query: 88
Length of database: 55,613,886
Length adjustment: 45
Effective length of query: 43
Effective length of database: 53,081,376
Effective search space: 2282499168
Effective search space used: 2282499168
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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