Clone Name | FLbaf96m09 |
---|---|
Clone Library Name | barley_pub |
>LOC_Os08g05820:12008.t00474:unspliced-genomic monocopper oxidase-like protein SKS1 precursor, putative, expressed| Length = 5142 Score = 39.6 bits (80), Expect = 0.023 Identities = 16/32 (50%), Positives = 17/32 (53%) Frame = +1 / -2 Query: 139 AH*RCWHNHSSTYICLHQRKSNHAPYQWRTCH 234 A * W ST C+H K N YQWRTCH Sbjct: 3965 AE*SLWIWTCSTSSCIHSEKYNCNGYQWRTCH 3870
>LOC_Os01g68050:12001.t06162:unspliced-genomic betaine/proline transporter, putative, expressed| Length = 2970 Score = 35.4 bits (71), Expect = 0.40 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +1 / -2 Query: 151 CWHNHSSTYICLHQRKSNHAPYQWRTCHC 237 CW H S +ICLH + QW +C C Sbjct: 185 CWFVHRSPWICLHLCLFDEQWLQWCSCRC 99
>LOC_Os12g22010:12012.t01940:unspliced-genomic hypothetical protein| Length = 5665 Score = 33.6 bits (67), Expect = 1.4 Identities = 19/51 (37%), Positives = 27/51 (52%) Frame = +3 / +2 Query: 108 HTF*MSRCLTSPLTVLAQSFVNVYLPSSEEIQSRTLSMAYLSLLRGGPMPT 260 H F + S LT LA++F N++L S +I + +A SLL P PT Sbjct: 5345 HRFALFMASASVLTALAKTFPNLFLELSGDIFELSGHLASDSLLHQPPSPT 5497
>LOC_Os03g52930:12003.t04616:unspliced-genomic hypothetical protein| Length = 1036 Score = 33.6 bits (67), Expect = 1.4 Identities = 18/59 (30%), Positives = 28/59 (47%) Frame = +3 / +2 Query: 162 SFVNVYLPSSEEIQSRTLSMAYLSLLRGGPMPTPVQRITTRITTCLRMWLLSNTLSC*C 338 +F LP QSR M YLSL P+P P+Q + + + ++L+ + *C Sbjct: 260 TFSPTTLPQIIHRQSRISPMLYLSLAHLSPLPAPIQFLEGINSLAILLYLVFHISKV*C 436
>LOC_Os02g55130:12002.t05089:unspliced-genomic serine carboxypeptidase K10B2.2 precursor, putative, expressed| Length = 7227 Score = 33.1 bits (66), Expect = 2.0 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +1 / -2 Query: 154 WHNHSSTYICLHQRKSNHAPYQWRTCHCY 240 WHNH + I L NH P+ T H Y Sbjct: 6443 WHNHPYSLIILFPTPINHTPHLSTTLHLY 6357
>LOC_Os11g19030:12011.t01673:unspliced-genomic conserved hypothetical protein| Length = 10141 Score = 25.4 bits (49), Expect(2) = 2.4 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -2 / -2 Query: 267 ELELALDLHVTVTGTPLI 214 E ELALDL T+ G P+I Sbjct: 2079 EPELALDLQCTLFGLPVI 2026 Score = 24.4 bits (47), Expect(2) = 2.4 Identities = 8/12 (66%), Positives = 11/12 (91%) Frame = -2 / -3 Query: 330 NSVCCLITTSVN 295 +S+CCL TTS+N Sbjct: 2105 HSMCCLSTTSLN 2070
>LOC_Os05g13960:12005.t01172:unspliced-genomic transposon protein, putative, Pong sub-class, expressed| Length = 1950 Score = 32.7 bits (65), Expect = 2.7 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = -1 / -2 Query: 124 DI*NVCHISTISYVVFDIVE*ERLSSIHIDRCHLACL 14 +I V H+ ++F +V+ + ++HI +CH+ CL Sbjct: 1223 EIPTVHHVKWPMVLIFGLVQSTCMHNLHISKCHIKCL 1113
>LOC_Os02g18590:12002.t01652:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5881 Score = 32.7 bits (65), Expect = 2.7 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +1 / +2 Query: 409 YCYQTSHQRTSFSGSTQRGSRWVSG 483 +CY H R S G+ + G+RWV G Sbjct: 1805 FCYDDQHDRLS*GGAGEGGARWVWG 1879
>LOC_Os03g43720:12003.t03763:unspliced-genomic synaptic vesicle 2-related protein, putative, expressed| Length = 4806 Score = 30.4 bits (60), Expect(2) = 3.0 Identities = 9/30 (30%), Positives = 17/30 (56%) Frame = +1 / +2 Query: 154 WHNHSSTYICLHQRKSNHAPYQWRTCHCYV 243 W +S Y+CLH + + W+ C+C++ Sbjct: 1484 WGLGNSNYLCLHMQAWVGS*SPWKLCYCHL 1573 Score = 24.0 bits (46), Expect(2) = 3.0 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = +3 / +3 Query: 288 TTCLRMWLLSNTLSC* 335 T C +WL++ T SC* Sbjct: 2346 TLCCPLWLIAFTFSC* 2393
>LOC_Os10g06810:12010.t00548:unspliced-genomic conserved hypothetical protein| Length = 2375 Score = 24.9 bits (48), Expect(2) = 3.7 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -2 / -1 Query: 267 ELELALDLHVTVTGTPLI 214 E ELALDLH T+ P+I Sbjct: 2264 EPELALDLHCTLFCLPVI 2211 Score = 24.4 bits (47), Expect(2) = 3.7 Identities = 8/12 (66%), Positives = 11/12 (91%) Frame = -2 / -2 Query: 330 NSVCCLITTSVN 295 +S+CCL TTS+N Sbjct: 2290 HSMCCLSTTSLN 2255
>LOC_Os06g48530:12006.t04539:unspliced-genomic expressed protein| Length = 7044 Score = 32.2 bits (64), Expect = 3.7 Identities = 11/41 (26%), Positives = 20/41 (48%) Frame = +1 / -2 Query: 154 WHNHSSTYICLHQRKSNHAPYQWRTCHCYVEVQCQLQFSVL 276 WH+ S+ Y CL+ K + R+ H + +C+ + L Sbjct: 6590 WHSKSTYYFCLYDNKDSMVKPSSRSNHIQTKARCKAWWQAL 6468
>LOC_Os11g47320:12011.t04207:unspliced-genomic expressed protein| Length = 7744 Score = 31.8 bits (63), Expect = 5.1 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = +1 / -3 Query: 175 YICLHQRKSNHAPYQWRTCHCYVEVQCQLQFS 270 YI LH + +NH P TC V C LQFS Sbjct: 653 YIHLHGQSTNHFPNYVSTCT*IVSGTC*LQFS 558
>LOC_Os02g20810:12002.t01873:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2943 Score = 31.8 bits (63), Expect = 5.1 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +1 / +2 Query: 409 YCYQTSHQRTSFSGSTQRGSRWVSG 483 +CY H R S G+ + G+RWV G Sbjct: 1280 FCYDDQHGRLS*GGAGEGGARWVWG 1354
>LOC_Os06g05860:12006.t00472:unspliced-genomic 6-phosphofructokinase, putative, expressed| Length = 4804 Score = 31.8 bits (63), Expect = 5.1 Identities = 12/44 (27%), Positives = 24/44 (54%) Frame = +3 / -2 Query: 153 LAQSFVNVYLPSSEEIQSRTLSMAYLSLLRGGPMPTPVQRITTR 284 L + + ++P+ +++RT+ +A L P+PTP+ R R Sbjct: 471 LDRILIGSHIPTHSRMRTRTMDLAPRQSLPSPPLPTPIPRSIQR 340
>LOC_Os03g53280:12003.t04650:unspliced-genomic beige/BEACH domain containing protein, expressed| Length = 17474 Score = 31.8 bits (63), Expect = 5.1 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = +3 / -1 Query: 159 QSFVNVYLPSSEEIQSRTLSMAYLSLLRGGPMPTPVQRITTRITTCLRM 305 Q ++ + PSS LS ++SLLR P T + I+T T RM Sbjct: 11366 QRLLSSFFPSSSSSSKSFLSRKFISLLRHKP*KTKAESISTNRGTHSRM 11220
>LOC_Os01g25450:12001.t02261:unspliced-genomic AIG1 family protein, expressed| Length = 16584 Score = 25.4 bits (49), Expect(2) = 5.6 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = +2 / -2 Query: 5 CHSQASKMASINMDGRQSFLLNDIKNHIRNGGNVTHILNV 124 C S AS +S+ +DG L ++IK + V I ++ Sbjct: 4805 CRSAASTTSSVEVDGSLRTLASNIKQ*LSEKSPVDFIASI 4686 Score = 23.1 bits (44), Expect(2) = 5.6 Identities = 8/15 (53%), Positives = 9/15 (60%) Frame = +1 / -1 Query: 142 H*RCWHNHSSTYICL 186 H* C HN T +CL Sbjct: 4641 H*NCIHNFKLTSLCL 4597
>LOC_Os06g05980:12006.t00484:unspliced-genomic solute carrier family 35 member C2, putative, expressed| Length = 5587 Score = 25.4 bits (49), Expect(2) = 6.2 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = -3 / +3 Query: 332 TTQCVA**PHP*TCSYPSGNTLNWSW 255 T++C P * CS P G W W Sbjct: 774 TSRCRRGSPRS*CCSRPKGWRTRWRW 851 Score = 23.1 bits (44), Expect(2) = 6.2 Identities = 8/11 (72%), Positives = 8/11 (72%) Frame = -3 / +3 Query: 269 LNWSWHWTST* 237 L W HWTST* Sbjct: 966 LLWEQHWTST* 998
>LOC_Os10g28040:12010.t02159:unspliced-genomic general control of amino acid synthesis protein 5-like 2, putative,| expressed Length = 6426 Score = 27.2 bits (53), Expect(2) = 6.9 Identities = 7/14 (50%), Positives = 11/14 (78%) Frame = +2 / +2 Query: 176 IFAFIRGNPITHPI 217 +F+F+ GNP HP+ Sbjct: 5849 LFSFVSGNPFRHPV 5890 Score = 26.3 bits (51), Expect(2) = 6.9 Identities = 11/36 (30%), Positives = 18/36 (50%) Frame = +2 / +3 Query: 29 ASINMDGRQSFLLNDIKNHIRNGGNVTHILNVKVSN 136 A + G + L+N +K H R+ +TH L +N Sbjct: 1527 ADEQVKGYGTRLMNHLKQHARDADGLTHFLTYADNN 1634
>LOC_Os12g34200:12012.t03109:unspliced-genomic F-box domain containing protein| Length = 3606 Score = 31.3 bits (62), Expect = 7.0 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 / +2 Query: 150 PLVGSLDTLTFRMCVTFPPFRMWFLI 73 P +G LD L + +C+ PF+M FLI Sbjct: 2750 PWLGKLDHLAYLICIHSLPFKMVFLI 2827
>LOC_Os11g24050:12011.t02026:unspliced-genomic expressed protein| Length = 5045 Score = 31.3 bits (62), Expect = 7.0 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = +1 / +3 Query: 403 GIYCYQTSHQRTSFSGSTQRGSRWVSGPPR 492 G C+ S + + G RG RW+ PPR Sbjct: 222 GFGCWSPSWRSSGSRGGRGRGERWLRSPPR 311
>LOC_Os01g52170:12001.t04644:unspliced-genomic HCF101, putative, expressed| Length = 3814 Score = 31.3 bits (62), Expect = 7.0 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = -1 / +1 Query: 664 CLIRLILNFECYVNFWLKLRQSQQQKVFDSI 572 C L++N++C W+ L Q QQQ + D + Sbjct: 3406 CR*HLMINWKCLRGLWMFLVQQQQQSLHDRV 3498
>LOC_Os02g06930:12002.t00590:unspliced-genomic serine/threonine-protein kinase receptor precursor, putative,| expressed Length = 4336 Score = 25.4 bits (49), Expect(3) = 8.0 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = +1 / +2 Query: 163 HSSTYICLHQRKSNHAPYQWRTCHC 237 +SS Y+C H+ +N P ++ HC Sbjct: 2171 NSSKYLCWHRPWTNIPP*SCKSPHC 2245 Score = 23.1 bits (44), Expect(3) = 8.0 Identities = 8/24 (33%), Positives = 13/24 (54%) Frame = +3 / +3 Query: 255 PTPVQRITTRITTCLRMWLLSNTL 326 P+P+ I+ L +W+L N L Sbjct: 3195 PSPLSSCAGHISNALVLWVLLNVL 3266 Score = 23.1 bits (44), Expect(3) = 8.0 Identities = 8/15 (53%), Positives = 9/15 (60%) Frame = +3 / +2 Query: 372 PRHLLIKLPDWHLLL 416 P+H LP WH LL Sbjct: 3854 PQHPHCYLPSWHTLL 3898
>LOC_Os05g32970:12005.t02892:unspliced-genomic expressed protein| Length = 4056 Score = 25.8 bits (50), Expect(2) = 8.5 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -1 / -2 Query: 433 SGERFGNNKCQSGSLISKCLGDGTIKLTNN 344 SG RFG + G L S LG+GT NN Sbjct: 1382 SG*RFGLEQILVGPLCSISLGNGT*YKNNN 1293 Score = 22.1 bits (42), Expect(2) = 8.5 Identities = 8/15 (53%), Positives = 10/15 (66%) Frame = -3 / -3 Query: 524 ALHLHSTRLHHRGGP 480 A+ LH+TR HH P Sbjct: 1426 AVALHNTRAHHGALP 1382
>LOC_Os02g48200:12002.t04404:unspliced-genomic lectin-like protein kinase, putative, expressed| Length = 3189 Score = 26.7 bits (52), Expect(2) = 9.1 Identities = 8/22 (36%), Positives = 11/22 (50%) Frame = +1 / -2 Query: 91 KWWKCDTHSKCQGV*RAH*RCW 156 +WW+C S C+G R W Sbjct: 215 RWWRCLRRSGCRGAATGACRTW 150 Score = 25.4 bits (49), Expect(2) = 9.1 Identities = 5/9 (55%), Positives = 8/9 (88%) Frame = +1 / -2 Query: 79 KPHTKWWKC 105 +P T+WW+C Sbjct: 572 RPRTRWWRC 546
>LOC_Os12g30270:12012.t02733:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2775 Score = 30.9 bits (61), Expect = 9.7 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +1 / -1 Query: 7 PLTSKQDGIYQYGWTTVVLTQRYQKPHTKWWKCDTHS 117 P+T+K G G+ T VL + + T W KC H+ Sbjct: 2475 PVTTKSSGADILGYPT*VLAEERGQVKTWWAKCSIHT 2365
>LOC_Os11g13694:12011.t01203:unspliced-genomic expressed protein| Length = 16397 Score = 30.9 bits (61), Expect = 9.7 Identities = 8/29 (27%), Positives = 18/29 (62%) Frame = +1 / -1 Query: 391 NYRTGIYCYQTSHQRTSFSGSTQRGSRWV 477 +Y+ YC+++SH+ + Q+G +W+ Sbjct: 9431 SYKGSTYCFKSSHRTQTMHTRIQKGKQWL 9345
>LOC_Os05g50624:12005.t04643:unspliced-genomic transposon protein, putative, unclassified, expressed| Length = 2337 Score = 30.9 bits (61), Expect = 9.7 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +1 / -2 Query: 151 CWHNHSSTYICLHQRKSNHAPYQWRT 228 CW ++ S C++ SNH P W T Sbjct: 383 CWRDNPSDLHCIYHVMSNHCPM*W*T 306
>LOC_Os05g22300:12005.t01892:unspliced-genomic 3-N-debenzoyl-2-deoxytaxol N-benzoyltransferase, putative| Length = 1501 Score = 30.9 bits (61), Expect = 9.7 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 / +2 Query: 397 RTGIYCYQTSHQRTSFSGSTQRGSRWVSGPPR 492 RT C +TS RTSF+ + S + PPR Sbjct: 77 RTSSRCCRTSTTRTSFASTAPASSSTATAPPR 172
>LOC_Os03g24420:12003.t02137:unspliced-genomic hypothetical protein| Length = 3596 Score = 30.9 bits (61), Expect = 9.7 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +1 / -3 Query: 196 KSNHAPYQWRTCHCYVEVQC 255 + +HAP +WR+ H V VQC Sbjct: 2235 RKSHAPVEWRSSHPCVLVQC 2176
>LOC_Os01g15229:12001.t01374:unspliced-genomic hypothetical protein| Length = 801 Score = 30.9 bits (61), Expect = 9.7 Identities = 12/41 (29%), Positives = 19/41 (46%) Frame = +1 / +2 Query: 7 PLTSKQDGIYQYGWTTVVLTQRYQKPHTKWWKCDTHSKCQG 129 P TS+ ++ W T L++R + +WW C C G Sbjct: 497 PATSRGSLTWRASWATPWLSRRRRATTARWWLCCCCCPC*G 619
>LOC_Os01g15139:12001.t01366:unspliced-genomic hypothetical protein| Length = 801 Score = 30.9 bits (61), Expect = 9.7 Identities = 12/41 (29%), Positives = 19/41 (46%) Frame = +1 / +2 Query: 7 PLTSKQDGIYQYGWTTVVLTQRYQKPHTKWWKCDTHSKCQG 129 P TS+ ++ W T L++R + +WW C C G Sbjct: 497 PATSRGSLTWRASWATPWLSRRRRATTARWWLCCCCCPC*G 619
>LOC_Os12g30150:12012.t02723:unspliced-genomic calcium-dependent protein kinase, isoform AK1, putative, expressed| Length = 3163 Score = 30.9 bits (61), Expect = 9.7 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +3 / +2 Query: 177 YLPSSEEIQSRTLSMAYLSLLRGGPMPTPVQRITTRITTCLRMWLL 314 +L S + L A LS LR ++++ R++TCL +W L Sbjct: 1484 WLQMSGSAPDKPLDSAVLSRLRQFSAMNKLKKMALRVSTCLALWKL 1621 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 284,655,498 Number of extensions: 4873659 Number of successful extensions: 18177 Number of sequences better than 10.0: 32 Length of query: 226 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 177 Effective length of database: 52,856,264 Effective search space: 9355558728 Effective search space used: 9355558728 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)